Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47598 * 2 1 4 4 C 1.50696 * 109.47283 * 120.00354 * 2 1 3 5 5 H 1.08001 * 120.00344 * 119.99552 * 4 2 1 6 6 C 1.37882 * 120.00261 * 300.00313 * 4 2 1 7 7 N 1.31519 * 119.99629 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00404 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47040 * 89.99557 * 8 6 4 10 10 H 1.48501 * 109.47366 * 209.99495 * 8 6 4 11 11 H 1.48505 * 109.47262 * 329.99941 * 8 6 4 12 12 N 1.46501 * 109.47114 * 240.00307 * 2 1 3 13 13 N 1.40094 * 120.00091 * 90.00085 * 12 2 1 14 14 C 1.28009 * 120.00201 * 174.64560 * 13 12 2 15 15 C 1.51506 * 121.22160 * 4.39396 * 14 13 12 16 16 C 1.52906 * 108.32745 * 228.43764 * 15 14 13 17 17 O 1.42902 * 109.37541 * 307.92809 * 16 15 14 18 18 C 1.42761 * 114.57866 * 64.59786 * 17 16 15 19 19 C 1.53056 * 109.67158 * 55.50670 * 18 17 16 20 20 C 1.53108 * 109.19713 * 63.41603 * 19 18 17 21 21 O 1.42908 * 109.40953 * 57.46201 * 20 19 18 22 22 C 1.42913 * 114.09372 * 298.77891 * 21 20 19 23 23 C 1.53078 * 109.62514 * 175.42244 * 18 17 16 24 24 C 1.51522 * 121.22408 * 184.67526 * 14 13 12 25 25 H 1.08999 * 109.47593 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47211 * 300.00079 * 1 2 3 27 27 H 1.09003 * 109.47119 * 59.99679 * 1 2 3 28 28 H 0.97001 * 120.00072 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00016 * 270.00314 * 12 2 1 30 30 H 1.09002 * 109.74194 * 348.15541 * 15 14 13 31 31 H 1.09003 * 109.74318 * 108.86371 * 15 14 13 32 32 H 1.08999 * 109.58163 * 187.87818 * 16 15 14 33 33 H 1.09004 * 109.36807 * 67.83588 * 16 15 14 34 34 H 1.08993 * 109.52284 * 183.33615 * 19 18 17 35 35 H 1.09002 * 109.51988 * 303.50625 * 19 18 17 36 36 H 1.08996 * 109.48120 * 297.48205 * 20 19 18 37 37 H 1.09003 * 109.48462 * 177.44042 * 20 19 18 38 38 H 1.09005 * 109.47875 * 301.26275 * 22 21 20 39 39 H 1.09001 * 109.49998 * 181.22517 * 22 21 20 40 40 H 1.09003 * 109.52489 * 56.48859 * 23 18 17 41 41 H 1.09007 * 109.51943 * 176.60580 * 23 18 17 42 42 H 1.09004 * 109.73021 * 251.38703 * 24 14 13 43 43 H 1.09000 * 109.73037 * 12.06108 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 0.9434 0.8300 2.6035 8 14 2.3213 -1.1206 4.0079 9 1 3.6296 -0.5462 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4858 -2.5665 3.7118 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0300 -2.3747 14 6 2.7746 -0.5521 -3.3879 15 6 3.0609 -2.0398 -3.3777 16 6 4.4923 -2.2574 -3.8694 17 8 4.6733 -1.5818 -5.1156 18 6 4.5640 -0.1603 -5.0418 19 6 5.5483 0.3788 -4.0012 20 6 6.9782 0.0706 -4.4535 21 8 7.2032 0.6464 -5.7420 22 6 6.3437 0.1402 -6.7654 23 6 4.8881 0.4518 -6.4069 24 6 3.1357 0.2226 -4.6390 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1616 3.4845 29 1 2.1799 -1.6467 -1.1723 30 1 2.9580 -2.4276 -2.3642 31 1 2.3651 -2.5532 -4.0414 32 1 4.6743 -3.3236 -4.0036 33 1 5.1915 -1.8585 -3.1345 34 1 5.4215 1.4570 -3.9041 35 1 5.3597 -0.0988 -3.0397 36 1 7.1173 -1.0091 -4.5085 37 1 7.6846 0.4924 -3.7385 38 1 6.4745 -0.9387 -6.8493 39 1 6.5929 0.6117 -7.7160 40 1 4.2280 0.0266 -7.1629 41 1 4.7457 1.5317 -6.3649 42 1 2.4455 -0.0338 -5.4427 43 1 3.0847 1.2925 -4.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884441290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = -54.638674 kcal Electronic energy + Delta-G solvation = -23237.406706 eV Core-core repulsion = 19897.370186 eV Total energy + Delta-G solvation = -3340.036520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.59545 -38.00006 -36.46113 -34.29266 -33.39742 -31.87193 -31.20649 -29.92306 -28.94403 -26.47821 -25.20301 -24.02654 -23.35158 -23.05406 -20.48703 -19.81816 -18.54936 -17.12676 -16.57921 -16.17864 -16.05450 -15.55839 -15.19170 -14.95355 -14.68569 -14.31300 -14.13636 -13.82569 -13.21858 -12.77500 -12.60848 -12.45498 -12.41384 -12.10612 -11.92517 -11.57526 -11.42115 -11.36548 -11.14368 -11.03014 -10.83215 -10.52391 -10.42630 -10.32111 -10.21121 -10.17092 -9.72517 -9.38727 -9.22567 -8.95784 -8.52318 -6.88336 -6.15020 -4.23224 2.87260 3.22270 3.28883 3.30966 3.64062 3.81200 3.86623 4.34457 4.61535 4.70603 4.77444 4.89556 4.95908 5.16426 5.17202 5.18194 5.26952 5.30392 5.34753 5.53392 5.57820 5.65490 5.66376 5.73677 5.82569 5.87332 5.92037 6.01638 6.15778 6.17243 6.42887 6.75594 7.00088 7.03788 7.12035 7.16820 7.24048 7.57343 7.78999 7.86817 8.16846 8.33111 8.85558 9.40784 9.44251 10.90904 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.003859 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.110473 B = 7254.367860 C = 7575.620689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.637 5.637 13 N -0.202 5.202 14 C -0.012 4.012 15 C -0.138 4.138 16 C 0.069 3.931 17 O -0.372 6.372 18 C 0.126 3.874 19 C -0.180 4.180 20 C 0.066 3.934 21 O -0.386 6.386 22 C 0.064 3.936 23 C -0.139 4.139 24 C -0.063 4.063 25 H 0.024 0.976 26 H 0.089 0.911 27 H 0.011 0.989 28 H 0.264 0.736 29 H 0.367 0.633 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.309 -3.234 -16.305 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.197 3.803 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.375 5.375 13 N -0.012 5.012 14 C -0.205 4.205 15 C -0.179 4.179 16 C -0.009 4.009 17 O -0.291 6.291 18 C 0.086 3.914 19 C -0.218 4.218 20 C -0.011 4.011 21 O -0.304 6.304 22 C -0.013 4.013 23 C -0.177 4.177 24 C -0.103 4.103 25 H 0.043 0.957 26 H 0.107 0.893 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.205 0.795 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.954 -2.068 -15.841 17.846 hybrid contribution 0.018 -1.775 1.211 2.149 sum 7.972 -3.843 -14.630 17.099 Atomic orbital electron populations 1.22204 0.99324 0.99020 1.00393 1.18454 0.89990 0.93399 0.78446 0.94334 1.21223 1.32142 1.13199 0.90279 0.92387 1.24858 0.94827 0.95016 0.98920 1.69895 1.36028 1.22562 1.23870 0.86444 0.78620 0.79851 0.82164 1.20535 1.21010 1.19910 1.48968 1.74433 1.07789 1.06358 1.73420 1.06049 1.27576 0.94157 1.24006 1.06900 0.93285 0.96350 1.21534 0.98350 0.95794 1.02176 1.22460 0.95192 0.96898 0.86345 1.87810 1.92193 1.17919 1.31225 1.21370 0.93655 0.81350 0.95072 1.22754 0.95710 1.03190 1.00149 1.22514 0.95867 0.97998 0.84715 1.87900 1.58711 1.66002 1.17825 1.22520 0.88778 0.99165 0.90849 1.22183 0.98151 1.01453 0.95891 1.20887 0.95479 1.00063 0.93860 0.95695 0.89295 0.96984 0.92583 0.79521 0.90580 0.90351 0.88918 0.92727 0.89859 0.89832 0.92876 0.89021 0.92434 0.89093 0.89954 0.89555 0.90368 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.29 37.15 0.35 -3.40 16 2 C 0.30 7.68 3.23 -69.09 -0.22 7.46 16 3 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.53 -14.22 8.74 -34.44 -0.30 -14.52 16 5 H 0.06 1.53 7.79 -52.49 -0.41 1.12 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.74 11.32 55.43 0.63 -24.12 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 12 N -0.64 -14.09 5.99 -5.89 -0.04 -14.13 16 13 N -0.20 -4.11 11.44 35.99 0.41 -3.70 16 14 C -0.01 -0.19 5.81 -78.11 -0.45 -0.64 16 15 C -0.14 -1.96 6.08 -27.54 -0.17 -2.12 16 16 C 0.07 0.84 6.52 37.11 0.24 1.08 16 17 O -0.37 -4.65 9.20 -35.23 -0.32 -4.97 16 18 C 0.13 1.50 0.68 -90.42 -0.06 1.44 16 19 C -0.18 -2.25 4.33 -26.65 -0.12 -2.36 16 20 C 0.07 0.75 6.70 37.21 0.25 1.00 16 21 O -0.39 -4.66 10.77 -35.23 -0.38 -5.04 16 22 C 0.06 0.63 6.70 37.21 0.25 0.88 16 23 C -0.14 -1.37 5.14 -26.64 -0.14 -1.51 16 24 C -0.06 -0.85 5.12 -27.35 -0.14 -0.99 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.37 7.59 6.14 -182.60 -1.12 6.47 16 30 H 0.08 1.15 5.69 -51.93 -0.30 0.85 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.69 6.08 -51.93 -0.32 0.37 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.17 5.72 -51.93 -0.30 0.88 16 36 H 0.05 0.59 7.84 -51.93 -0.41 0.19 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.58 7.84 -51.93 -0.41 0.17 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -29.02 332.38 -8.09 -37.11 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.77 Total: 6.12 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.61 Total: -11.99 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 1.00 Total: -41.94 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.70 Total: -10.02 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.02 -8.09 -37.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.527 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds