Wall clock time and date at job start Tue Mar 31 2020 05:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47117 * 2 1 4 4 C 1.50700 * 109.47301 * 240.00700 * 2 1 3 5 5 H 1.08006 * 119.99636 * 240.00271 * 4 2 1 6 6 C 1.37875 * 120.00238 * 59.99367 * 4 2 1 7 7 N 1.31510 * 119.99973 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47359 * 60.00074 * 8 6 4 10 10 H 1.48502 * 109.47187 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47034 * 299.99881 * 8 6 4 12 12 C 1.50701 * 109.47318 * 120.00076 * 2 1 3 13 13 O 1.21283 * 119.99941 * 83.55793 * 12 2 1 14 14 N 1.34897 * 120.00008 * 263.55224 * 12 2 1 15 15 C 1.47753 * 121.70010 * 355.72652 * 14 12 2 16 16 C 1.52874 * 109.40430 * 291.55393 * 15 14 12 17 17 C 1.53031 * 109.57873 * 224.78556 * 16 15 14 18 18 C 1.52958 * 109.65797 * 144.01602 * 17 16 15 19 19 C 1.53047 * 109.67423 * 273.07074 * 18 17 16 20 20 N 1.47060 * 109.08841 * 58.24828 * 19 18 17 21 21 C 1.35464 * 118.49684 * 255.47681 * 20 19 18 22 22 O 1.21235 * 120.55926 * 355.47157 * 21 20 19 23 23 C 1.50747 * 119.32071 * 175.62624 * 21 20 19 24 24 C 1.47731 * 121.53334 * 175.04267 * 14 12 2 25 25 H 1.09005 * 109.47419 * 59.16022 * 1 2 3 26 26 H 1.09002 * 109.46794 * 179.15725 * 1 2 3 27 27 H 1.09004 * 109.47107 * 299.15870 * 1 2 3 28 28 H 0.96999 * 120.00079 * 179.97438 * 7 6 4 29 29 H 1.09149 * 109.40611 * 51.41251 * 15 14 12 30 30 H 1.09005 * 109.59587 * 171.16680 * 15 14 12 31 31 H 1.08883 * 109.92800 * 345.12108 * 16 15 14 32 32 H 1.09155 * 109.41253 * 105.03939 * 16 15 14 33 33 H 1.09098 * 109.27009 * 263.85757 * 17 16 15 34 34 H 1.08935 * 109.66428 * 23.68114 * 17 16 15 35 35 H 1.08994 * 109.54684 * 33.24966 * 18 17 16 36 36 H 1.09068 * 109.40830 * 153.13917 * 18 17 16 37 37 H 1.09127 * 109.35938 * 177.89458 * 19 18 17 38 38 H 1.08886 * 109.62301 * 297.84305 * 19 18 17 39 39 H 0.97166 * 120.75957 * 75.54240 * 20 19 18 40 40 H 1.09121 * 109.31101 * 121.94642 * 23 21 20 41 41 H 1.08949 * 109.51647 * 2.25606 * 23 21 20 42 42 H 1.09108 * 109.47319 * 329.67916 * 24 14 12 43 43 H 1.09038 * 109.57177 * 209.82902 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.8260 -2.5199 -4.0079 10 1 1.8269 -0.4195 -5.2205 11 1 3.8065 -1.1204 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.1234 -1.9198 1.2377 14 7 2.3809 -0.0012 2.3237 15 6 2.3737 1.4763 2.3255 16 6 3.4852 1.9907 1.4106 17 6 4.2356 3.1292 2.1055 18 6 5.7212 3.0597 1.7482 19 6 6.4423 2.1251 2.7223 20 7 5.8224 0.7930 2.6588 21 6 5.0071 0.4106 3.6707 22 8 4.8598 1.1178 4.6444 23 6 4.2839 -0.9088 3.5777 24 6 2.7744 -0.6661 3.5829 25 1 -0.3634 0.5268 -0.8824 26 1 -0.3633 -1.0276 -0.0151 27 1 -0.3633 0.5007 0.8975 28 1 0.7094 1.1619 -3.4843 29 1 1.4091 1.8347 1.9616 30 1 2.5331 1.8415 3.3402 31 1 4.1804 1.1846 1.1818 32 1 3.0480 2.3622 0.4821 33 1 3.8281 4.0849 1.7727 34 1 4.1157 3.0422 3.1847 35 1 5.8346 2.6829 0.7318 36 1 6.1571 4.0573 1.8150 37 1 7.4938 2.0500 2.4402 38 1 6.3664 2.5217 3.7335 39 1 5.9945 0.2002 1.9084 40 1 4.5542 -1.5296 4.4334 41 1 4.5722 -1.4178 2.6586 42 1 2.2519 -1.6200 3.6692 43 1 2.5088 -0.0319 4.4292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889434633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:28 Heat of formation + Delta-G solvation = -82.533632 kcal Electronic energy + Delta-G solvation = -24348.834386 eV Core-core repulsion = 21007.588249 eV Total energy + Delta-G solvation = -3341.246136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16032 -38.70682 -36.35447 -35.24561 -33.93531 -33.27000 -31.10907 -29.88665 -29.79462 -25.38936 -25.19850 -24.25178 -22.90546 -21.20014 -20.73095 -20.09664 -18.23077 -17.08197 -16.61108 -16.25548 -15.96188 -15.50028 -15.08266 -14.51954 -14.41532 -14.11726 -13.65317 -13.53724 -12.95810 -12.91996 -12.54799 -12.49385 -12.25881 -12.09697 -11.52751 -11.44845 -11.32596 -11.16064 -11.01554 -10.79402 -10.74652 -10.71907 -10.59987 -10.41137 -10.09057 -10.05958 -9.66209 -9.00149 -8.83937 -8.59156 -8.30881 -8.09360 -6.05801 -4.09521 2.73039 3.31179 3.35227 3.35758 3.38855 3.59793 3.71024 4.42683 4.74834 4.95986 5.06847 5.10568 5.17327 5.26998 5.32006 5.41856 5.43246 5.56825 5.69335 5.74668 5.81636 5.89702 5.92464 6.03846 6.08401 6.16007 6.21588 6.31025 6.49427 6.57406 6.70210 6.74444 6.93214 7.02135 7.07156 7.50109 7.57567 7.76027 7.95137 8.10860 8.31088 8.37580 8.93471 9.21202 9.54760 11.01224 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.006166 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.108503 B = 4539.974710 C = 5028.655014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 H 0.054 0.946 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.530 3.470 13 O -0.550 6.550 14 N -0.633 5.633 15 C 0.115 3.885 16 C -0.142 4.142 17 C -0.119 4.119 18 C -0.137 4.137 19 C 0.108 3.892 20 N -0.728 5.728 21 C 0.529 3.471 22 O -0.550 6.550 23 C -0.158 4.158 24 C 0.125 3.875 25 H 0.092 0.908 26 H 0.033 0.967 27 H 0.009 0.991 28 H 0.262 0.738 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.406 0.594 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 4.404 10.027 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 H 0.072 0.928 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.323 3.677 13 O -0.426 6.426 14 N -0.369 5.369 15 C -0.008 4.008 16 C -0.180 4.180 17 C -0.157 4.157 18 C -0.176 4.176 19 C -0.016 4.016 20 N -0.381 5.381 21 C 0.317 3.683 22 O -0.428 6.428 23 C -0.199 4.199 24 C 0.001 3.999 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.241 0.759 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.024 4.353 10.533 13.938 hybrid contribution 0.432 -0.644 -1.311 1.524 sum 8.456 3.709 9.222 13.050 Atomic orbital electron populations 1.21681 0.96410 1.00126 1.00514 1.18990 0.94105 0.97216 0.88932 0.92816 1.20951 1.31325 1.12246 0.89211 0.91855 1.24900 0.95095 0.95018 0.98914 1.69855 1.36803 1.22914 1.23630 0.86567 0.79105 0.79911 0.81905 1.20168 1.21308 1.20316 1.22004 0.74213 0.87668 0.83851 1.90527 1.54095 1.15141 1.82846 1.49060 1.69498 1.06487 1.11819 1.21915 0.99300 0.79693 0.99859 1.22321 0.97895 0.98651 0.99160 1.21718 0.94431 0.98679 1.00867 1.22033 0.96379 0.99301 0.99873 1.21615 0.95668 0.82969 1.01355 1.46372 1.48980 1.18185 1.24584 1.20767 0.77915 0.87914 0.81746 1.90632 1.63862 1.56572 1.31706 1.22154 0.97791 0.95176 1.04811 1.21425 0.91512 0.99605 0.87371 0.88895 0.94799 0.97167 0.92865 0.91225 0.90622 0.90478 0.90501 0.92354 0.91401 0.91328 0.91394 0.91495 0.89283 0.75885 0.88206 0.89477 0.89639 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.94 37.16 0.33 -2.77 16 2 C 0.03 0.69 2.03 -92.92 -0.19 0.50 16 3 H 0.05 1.29 4.60 -51.93 -0.24 1.05 16 4 C -0.50 -13.67 8.32 -34.44 -0.29 -13.96 16 5 H 0.06 1.82 7.29 -52.48 -0.38 1.43 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.45 11.33 55.43 0.63 -23.82 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.53 11.84 6.48 -10.93 -0.07 11.77 16 13 O -0.55 -13.85 15.97 5.55 0.09 -13.76 16 14 N -0.63 -11.19 2.44 -171.65 -0.42 -11.60 16 15 C 0.12 1.82 4.70 -3.42 -0.02 1.81 16 16 C -0.14 -2.18 3.69 -26.78 -0.10 -2.28 16 17 C -0.12 -1.51 5.19 -26.74 -0.14 -1.65 16 18 C -0.14 -1.48 5.79 -26.73 -0.15 -1.64 16 19 C 0.11 1.14 6.36 -3.71 -0.02 1.11 16 20 N -0.73 -8.61 3.50 -59.70 -0.21 -8.82 16 21 C 0.53 7.27 4.94 -10.65 -0.05 7.22 16 22 O -0.55 -8.86 15.45 5.60 0.09 -8.77 16 23 C -0.16 -2.11 6.09 -27.91 -0.17 -2.28 16 24 C 0.12 1.88 5.54 -3.42 -0.02 1.86 16 25 H 0.09 2.39 6.09 -51.93 -0.32 2.08 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.07 1.14 7.68 -51.84 -0.40 0.74 16 30 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 31 H 0.08 1.25 5.63 -52.00 -0.29 0.96 16 32 H 0.08 1.34 6.85 -51.84 -0.36 0.98 16 33 H 0.06 0.70 8.15 -51.87 -0.42 0.28 16 34 H 0.07 0.92 6.01 -51.97 -0.31 0.61 16 35 H 0.07 0.78 7.84 -51.93 -0.41 0.38 16 36 H 0.07 0.63 8.15 -51.89 -0.42 0.20 16 37 H 0.07 0.57 8.15 -51.86 -0.42 0.14 16 38 H 0.09 1.05 6.97 -51.99 -0.36 0.68 16 39 H 0.41 4.46 8.49 -40.76 -0.35 4.11 16 40 H 0.10 1.13 8.15 -51.86 -0.42 0.70 16 41 H 0.09 1.24 7.91 -51.96 -0.41 0.83 16 42 H 0.09 1.33 7.65 -51.87 -0.40 0.93 16 43 H 0.08 1.10 7.49 -51.91 -0.39 0.71 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -31.07 327.16 -7.51 -38.59 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.62 Total: 5.77 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.98 Total: 1.28 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.00 Total: -44.24 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.18 Total: -22.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.07 -7.51 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889434633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.945 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds