Wall clock time and date at job start Tue Mar 31 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47160 * 2 1 4 4 C 1.50699 * 109.47015 * 119.99507 * 2 1 3 5 5 H 1.08005 * 119.99682 * 119.99342 * 4 2 1 6 6 C 1.37870 * 120.00452 * 300.00099 * 4 2 1 7 7 N 1.31513 * 120.00090 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00162 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46898 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46791 * 120.00001 * 8 6 4 11 11 H 1.48499 * 109.46986 * 239.99997 * 8 6 4 12 12 C 1.50694 * 109.46876 * 239.99698 * 2 1 3 13 13 O 1.21278 * 120.00094 * 257.20660 * 12 2 1 14 14 N 1.34904 * 119.99712 * 77.21173 * 12 2 1 15 15 C 1.47727 * 121.70136 * 174.77555 * 14 12 2 16 16 C 1.52868 * 109.44914 * 291.67686 * 15 14 12 17 17 C 1.53061 * 109.56331 * 227.16952 * 16 15 14 18 18 C 1.52974 * 109.52359 * 143.51893 * 17 16 15 19 19 C 1.52992 * 109.64260 * 271.32022 * 18 17 16 20 20 N 1.47593 * 108.93679 * 60.40478 * 19 18 17 21 21 C 1.36100 * 116.98562 * 253.11778 * 20 19 18 22 22 O 1.21261 * 120.80209 * 353.04358 * 21 20 19 23 23 C 1.50765 * 118.91826 * 173.17787 * 21 20 19 24 24 C 1.47741 * 121.57573 * 354.10047 * 14 12 2 25 25 H 1.09002 * 109.46860 * 306.89745 * 1 2 3 26 26 H 1.08998 * 109.47176 * 66.89023 * 1 2 3 27 27 H 1.08996 * 109.47356 * 186.89520 * 1 2 3 28 28 H 0.96998 * 120.00609 * 180.02562 * 7 6 4 29 29 H 1.09147 * 109.39637 * 51.63386 * 15 14 12 30 30 H 1.09027 * 109.54983 * 171.32897 * 15 14 12 31 31 H 1.08888 * 109.98209 * 347.45497 * 16 15 14 32 32 H 1.09153 * 109.38943 * 107.48238 * 16 15 14 33 33 H 1.08940 * 109.61326 * 23.36632 * 17 16 15 34 34 H 1.09055 * 109.37529 * 263.43063 * 17 16 15 35 35 H 1.09042 * 109.41780 * 151.34678 * 18 17 16 36 36 H 1.09001 * 109.51350 * 31.44881 * 18 17 16 37 37 H 1.08886 * 109.64617 * 299.95836 * 19 18 17 38 38 H 1.09129 * 109.39196 * 179.97438 * 19 18 17 39 39 H 0.97152 * 121.50807 * 72.34722 * 20 19 18 40 40 H 1.09180 * 109.18370 * 124.14531 * 23 21 20 41 41 H 1.08909 * 109.53133 * 4.60446 * 23 21 20 42 42 H 1.09065 * 109.56522 * 207.21800 * 24 14 12 43 43 H 1.09135 * 109.41924 * 326.96753 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8161 12 6 2.0323 -0.7105 -1.2304 13 8 2.4537 -1.8446 -1.1462 14 7 2.0133 -0.0849 -2.4254 15 6 2.5994 -0.7007 -3.6335 16 6 4.1192 -0.7687 -3.4839 17 6 4.7837 -0.2541 -4.7631 18 6 6.0538 0.5192 -4.4040 19 6 5.7090 1.9896 -4.1597 20 7 4.7509 2.0774 -3.0405 21 6 3.4619 2.3822 -3.3533 22 8 3.1543 2.6930 -4.4844 23 6 2.4166 2.3309 -2.2681 24 6 1.3914 1.2448 -2.5928 25 1 -0.3633 0.6170 0.8219 26 1 -0.3633 0.4033 -0.9452 27 1 -0.3634 -1.0202 0.1234 28 1 0.7087 1.1614 3.4844 29 1 2.2002 -1.7091 -3.7563 30 1 2.3421 -0.1038 -4.5088 31 1 4.4377 -0.1585 -2.6402 32 1 4.4207 -1.8040 -3.3140 33 1 4.0957 0.4031 -5.2936 34 1 5.0422 -1.0994 -5.4018 35 1 6.7671 0.4462 -5.2255 36 1 6.4956 0.0950 -3.5023 37 1 5.2706 2.4172 -5.0600 38 1 6.6176 2.5371 -3.9035 39 1 5.0255 1.9136 -2.1231 40 1 1.9129 3.2977 -2.2092 41 1 2.8937 2.1166 -1.3128 42 1 1.0480 1.3606 -3.6215 43 1 0.5392 1.3345 -1.9169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889434634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:31 Heat of formation + Delta-G solvation = -80.539223 kcal Electronic energy + Delta-G solvation = -24223.673977 eV Core-core repulsion = 20882.514325 eV Total energy + Delta-G solvation = -3341.159652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10426 -38.71464 -36.36844 -35.28167 -33.99087 -33.31704 -30.82455 -30.36864 -29.56851 -25.54610 -25.25504 -23.91073 -23.08929 -21.25277 -20.84438 -20.08563 -18.34732 -17.12341 -16.42014 -16.16251 -16.07567 -15.36555 -15.17173 -14.50856 -14.46260 -14.25883 -13.69317 -13.44478 -13.16640 -12.99424 -12.64510 -12.51739 -12.36822 -12.08218 -11.65706 -11.37228 -11.22883 -11.20166 -11.03570 -10.92607 -10.83293 -10.70717 -10.57481 -10.35355 -10.25064 -10.00209 -9.63019 -8.96992 -8.87431 -8.58825 -8.33922 -8.09978 -6.07161 -4.09485 2.72871 3.28942 3.36078 3.37198 3.44051 3.59720 3.70753 4.43465 4.71139 4.89613 4.97936 5.02717 5.17710 5.25755 5.27805 5.40055 5.45924 5.53818 5.62824 5.67881 5.80750 5.84539 5.87528 5.98155 6.03567 6.06691 6.13149 6.24872 6.40863 6.47855 6.58438 6.64393 6.82865 6.95073 7.06881 7.45049 7.59539 7.72423 7.95749 8.07411 8.30623 8.37544 8.98337 9.22786 9.56050 11.00717 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.005410 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.937934 B = 5174.464905 C = 5315.789266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.071 0.929 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.526 3.474 13 O -0.540 6.540 14 N -0.633 5.633 15 C 0.115 3.885 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.137 4.137 19 C 0.106 3.894 20 N -0.733 5.733 21 C 0.529 3.471 22 O -0.549 6.549 23 C -0.165 4.165 24 C 0.118 3.882 25 H 0.090 0.910 26 H 0.016 0.984 27 H 0.035 0.965 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.409 0.591 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 4.424 -12.236 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.089 0.911 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.318 3.682 13 O -0.416 6.416 14 N -0.369 5.369 15 C -0.008 4.008 16 C -0.171 4.171 17 C -0.157 4.157 18 C -0.175 4.175 19 C -0.019 4.019 20 N -0.387 5.387 21 C 0.317 3.683 22 O -0.426 6.426 23 C -0.206 4.206 24 C -0.006 4.006 25 H 0.108 0.892 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.245 0.755 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.923 4.088 -12.798 14.683 hybrid contribution 0.510 -0.482 1.318 1.493 sum 6.432 3.607 -11.480 13.644 Atomic orbital electron populations 1.21819 0.96474 1.01203 0.99562 1.18912 0.94152 0.96663 0.89245 0.93285 1.21150 1.31088 1.12561 0.89046 0.91078 1.24921 0.95094 0.95037 0.99013 1.69882 1.37059 1.23077 1.23443 0.86446 0.78674 0.79802 0.82630 1.19632 1.21096 1.21012 1.21962 0.76104 0.86338 0.83800 1.90532 1.46648 1.18921 1.85449 1.49052 1.60113 1.18852 1.08902 1.21775 0.93011 0.98551 0.87422 1.22118 0.95225 1.01809 0.97954 1.21749 0.96957 0.99377 0.97649 1.22031 0.97969 0.95754 1.01775 1.21713 0.92299 0.96170 0.91676 1.46655 1.09177 1.72397 1.10492 1.21011 0.83352 0.74271 0.89618 1.90637 1.80837 1.48130 1.23042 1.22297 0.97412 1.02187 0.98728 1.21792 0.94844 0.81012 1.02937 0.89157 0.96529 0.94594 0.93019 0.92053 0.90851 0.90678 0.91950 0.91353 0.92510 0.91379 0.91567 0.88988 0.91567 0.75499 0.87727 0.88753 0.90151 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.57 37.16 0.32 -2.67 16 2 C 0.03 0.74 1.87 -92.92 -0.17 0.56 16 3 H 0.05 1.14 6.15 -51.93 -0.32 0.83 16 4 C -0.50 -13.67 8.35 -34.44 -0.29 -13.95 16 5 H 0.07 2.08 6.89 -52.48 -0.36 1.72 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.19 11.40 55.43 0.63 -23.56 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.53 11.59 6.64 -10.93 -0.07 11.52 16 13 O -0.54 -13.77 15.45 5.56 0.09 -13.69 16 14 N -0.63 -10.99 2.44 -171.67 -0.42 -11.41 16 15 C 0.12 1.80 5.16 -3.44 -0.02 1.78 16 16 C -0.13 -1.93 4.42 -26.77 -0.12 -2.05 16 17 C -0.12 -1.41 5.24 -26.71 -0.14 -1.55 16 18 C -0.14 -1.37 5.77 -26.75 -0.15 -1.53 16 19 C 0.11 1.08 6.32 -3.45 -0.02 1.06 16 20 N -0.73 -8.59 3.67 -59.18 -0.22 -8.81 16 21 C 0.53 7.29 5.34 -10.35 -0.06 7.23 16 22 O -0.55 -8.86 15.69 5.57 0.09 -8.77 16 23 C -0.16 -2.23 5.84 -27.93 -0.16 -2.39 16 24 C 0.12 1.74 5.14 -3.44 -0.02 1.72 16 25 H 0.09 2.19 6.29 -51.93 -0.33 1.86 16 26 H 0.02 0.31 5.68 -51.93 -0.29 0.01 16 27 H 0.03 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.06 1.02 8.11 -51.85 -0.42 0.60 16 30 H 0.07 1.05 6.50 -51.91 -0.34 0.71 16 31 H 0.07 1.17 5.73 -51.99 -0.30 0.88 16 32 H 0.06 0.98 8.15 -51.84 -0.42 0.56 16 33 H 0.07 0.89 6.24 -51.96 -0.32 0.56 16 34 H 0.06 0.62 8.15 -51.90 -0.42 0.20 16 35 H 0.07 0.57 8.15 -51.91 -0.42 0.15 16 36 H 0.07 0.69 7.78 -51.93 -0.40 0.28 16 37 H 0.09 1.07 6.81 -51.99 -0.35 0.72 16 38 H 0.07 0.55 8.15 -51.86 -0.42 0.13 16 39 H 0.41 4.48 8.53 -40.76 -0.35 4.13 16 40 H 0.10 1.24 8.16 -51.83 -0.42 0.82 16 41 H 0.09 1.36 6.53 -51.98 -0.34 1.02 16 42 H 0.08 1.09 7.44 -51.89 -0.39 0.71 16 43 H 0.10 1.52 4.78 -51.85 -0.25 1.27 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -31.14 324.14 -7.40 -38.54 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.43 Total: 5.31 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.00 Total: 1.26 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.00 Total: -43.77 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.14 -7.40 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889434634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.002 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds