Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47277 * 2 1 4 4 C 1.50700 * 109.46979 * 239.99677 * 2 1 3 5 5 H 1.08000 * 119.99588 * 239.99937 * 4 2 1 6 6 C 1.37873 * 119.99926 * 60.00481 * 4 2 1 7 7 N 1.31516 * 119.99874 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99778 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47266 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47006 * 119.99968 * 8 6 4 11 11 H 1.48499 * 109.46932 * 239.99459 * 8 6 4 12 12 C 1.50703 * 109.46841 * 119.99849 * 2 1 3 13 13 O 1.21278 * 120.00138 * 120.00170 * 12 2 1 14 14 N 1.34777 * 119.99983 * 299.99902 * 12 2 1 15 15 C 1.46499 * 119.99651 * 175.15437 * 14 12 2 16 16 C 1.53000 * 109.47488 * 302.96341 * 15 14 12 17 17 C 1.50694 * 109.47097 * 305.52681 * 16 15 14 18 18 N 1.34781 * 120.00164 * 185.83206 * 17 16 15 19 19 O 1.21285 * 120.00473 * 5.83045 * 17 16 15 20 20 C 1.53008 * 109.46750 * 182.96639 * 15 14 12 21 21 C 1.52999 * 109.47108 * 299.99760 * 20 15 14 22 22 C 1.53001 * 109.47559 * 300.00294 * 21 20 15 23 23 C 1.53000 * 109.46918 * 59.99782 * 22 21 20 24 24 C 1.53001 * 109.47256 * 299.99896 * 23 22 21 25 25 H 1.08999 * 109.47025 * 299.99827 * 1 2 3 26 26 H 1.09001 * 109.47022 * 59.99860 * 1 2 3 27 27 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99241 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00429 * 355.15845 * 14 12 2 30 30 H 1.08998 * 109.46488 * 65.52537 * 16 15 14 31 31 H 1.08996 * 109.46941 * 185.52572 * 16 15 14 32 32 H 0.97004 * 119.99513 * 359.97438 * 18 17 16 33 33 H 0.96994 * 120.00012 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.46922 * 180.02562 * 20 15 14 35 35 H 1.08997 * 109.47016 * 60.00263 * 20 15 14 36 36 H 1.08997 * 109.47249 * 179.97438 * 21 20 15 37 37 H 1.09003 * 109.47093 * 60.00554 * 21 20 15 38 38 H 1.08997 * 109.47346 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.46687 * 299.99950 * 22 21 20 40 40 H 1.08999 * 109.47536 * 60.00060 * 23 22 21 41 41 H 1.09005 * 109.47059 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.47495 * 300.00534 * 24 23 22 43 43 H 1.09003 * 109.47161 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6033 8 14 2.3226 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1051 -0.9990 3.6489 16 6 1.5477 -2.4216 3.5682 17 6 0.0576 -2.3657 3.3510 18 7 -0.6687 -3.5010 3.3655 19 8 -0.4884 -1.2990 3.1633 20 6 1.5517 -0.3044 4.8948 21 6 2.1091 1.1182 4.9756 22 6 3.6359 1.0639 5.0577 23 6 4.1893 0.3693 3.8119 24 6 3.6320 -1.0534 3.7311 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7083 1.1607 -3.4844 29 1 1.2085 0.5775 2.5449 30 1 2.0165 -2.9488 2.7372 31 1 1.7598 -2.9482 4.4986 32 1 -0.2320 -4.3541 3.5153 33 1 -1.6278 -3.4650 3.2253 34 1 1.8485 -0.8615 5.7834 35 1 0.4640 -0.2657 4.8362 36 1 1.7145 1.6132 5.8629 37 1 1.8126 1.6756 4.0870 38 1 4.0330 2.0773 5.1157 39 1 3.9323 0.5065 5.9463 40 1 3.8929 0.9265 2.9232 41 1 5.2771 0.3302 3.8706 42 1 3.9284 -1.6107 4.6197 43 1 4.0259 -1.5480 2.8433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891319842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = -97.865392 kcal Electronic energy + Delta-G solvation = -24352.280542 eV Core-core repulsion = 21010.369571 eV Total energy + Delta-G solvation = -3341.910972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49564 -38.41659 -37.25891 -33.64801 -33.43019 -33.23210 -31.22195 -30.58340 -29.60271 -27.04689 -24.98424 -22.83107 -22.57178 -21.65538 -20.07006 -19.65591 -18.41941 -17.06705 -16.49539 -16.23763 -15.95914 -15.09322 -14.98095 -14.56670 -14.28793 -14.12866 -13.74373 -13.38278 -13.24355 -12.93614 -12.32574 -12.14012 -12.03894 -11.90899 -11.87565 -11.39459 -11.30066 -10.95987 -10.90272 -10.59355 -10.51019 -10.41060 -10.19455 -10.07173 -9.91715 -9.83936 -9.53631 -9.38166 -8.81720 -8.39866 -8.11357 -8.08094 -5.92872 -3.95430 2.98063 3.36521 3.43736 3.51596 3.74912 3.89993 4.13763 4.54920 4.83374 4.85245 4.96941 5.19229 5.27280 5.35405 5.40127 5.51982 5.60303 5.67260 5.72334 5.83064 5.87633 6.06560 6.11127 6.20208 6.29164 6.35610 6.41753 6.54539 6.62150 6.68865 6.86856 6.96592 7.10834 7.15460 7.41649 7.52685 7.66282 7.91342 8.13034 8.34462 8.54758 8.68914 9.13482 9.46827 9.69699 11.14652 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.006056 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.151190 B = 4622.708786 C = 5255.501877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.028 3.972 3 H 0.046 0.954 4 C -0.495 4.495 5 H 0.073 0.927 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.525 3.475 13 O -0.556 6.556 14 N -0.715 5.715 15 C 0.201 3.799 16 C -0.158 4.158 17 C 0.520 3.480 18 N -0.864 5.864 19 O -0.524 6.524 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.129 4.129 25 H 0.016 0.984 26 H 0.086 0.914 27 H 0.024 0.976 28 H 0.258 0.742 29 H 0.397 0.603 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -3.994 17.289 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 H 0.064 0.936 4 C -0.534 4.534 5 H 0.091 0.909 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 C 0.315 3.685 13 O -0.434 6.434 14 N -0.368 5.368 15 C 0.113 3.887 16 C -0.199 4.199 17 C 0.305 3.695 18 N -0.428 5.428 19 O -0.399 6.399 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.168 4.168 25 H 0.036 0.964 26 H 0.105 0.895 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.232 0.768 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.224 0.776 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.644 -3.804 16.955 17.388 hybrid contribution -0.231 -0.583 -0.811 1.025 sum 0.412 -4.386 16.144 16.735 Atomic orbital electron populations 1.21624 0.96311 0.99458 1.00719 1.18840 0.94224 0.96607 0.89625 0.93583 1.21198 1.30470 1.12576 0.89109 0.90867 1.24956 0.95292 0.95130 0.99024 1.69907 1.37338 1.23247 1.23148 0.86457 0.78543 0.79775 0.82800 1.19669 1.21199 1.21150 1.21766 0.77795 0.84334 0.84581 1.90415 1.38284 1.27766 1.86902 1.46152 1.58800 1.27335 1.04536 1.19775 0.93387 0.89234 0.86297 1.22191 0.92503 1.00495 1.04746 1.20617 0.89776 0.83783 0.75313 1.43914 1.11910 1.09577 1.77377 1.90710 1.72953 1.28919 1.47335 1.21892 1.01912 0.96105 0.96295 1.21496 0.95515 0.96730 1.01749 1.21543 0.95635 1.00116 0.98173 1.21446 0.99272 0.96250 0.98291 1.21954 0.94571 0.97383 1.02864 0.96449 0.89495 0.95639 0.93205 0.76780 0.86424 0.89462 0.77586 0.77346 0.91689 0.90052 0.92279 0.91626 0.92441 0.92502 0.91396 0.92505 0.92300 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.87 37.16 0.33 -2.76 16 2 C 0.03 0.73 2.64 -92.92 -0.24 0.48 16 3 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.49 -14.37 8.37 -34.44 -0.29 -14.65 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -26.08 11.32 55.43 0.63 -25.45 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 C 0.53 11.94 6.51 -10.98 -0.07 11.87 16 13 O -0.56 -13.63 11.75 5.56 0.07 -13.57 16 14 N -0.72 -12.95 2.21 -47.60 -0.11 -13.05 16 15 C 0.20 2.96 0.26 -131.81 -0.03 2.93 16 16 C -0.16 -2.23 4.40 -27.89 -0.12 -2.35 16 17 C 0.52 7.81 7.53 -10.99 -0.08 7.72 16 18 N -0.86 -9.55 8.87 31.22 0.28 -9.27 16 19 O -0.52 -9.54 13.99 5.55 0.08 -9.46 16 20 C -0.12 -1.55 4.54 -26.73 -0.12 -1.67 16 21 C -0.12 -1.37 5.75 -26.73 -0.15 -1.52 16 22 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 23 C -0.11 -1.56 5.77 -26.73 -0.15 -1.71 16 24 C -0.13 -1.86 4.56 -26.73 -0.12 -1.98 16 25 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.40 7.09 6.78 -40.82 -0.28 6.82 16 30 H 0.12 1.96 6.30 -51.93 -0.33 1.63 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.40 3.19 8.83 -40.82 -0.36 2.83 16 33 H 0.40 4.05 8.93 -40.82 -0.36 3.69 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.13 6.21 -51.93 -0.32 0.81 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.84 6.80 -51.93 -0.35 0.49 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.08 7.60 -51.93 -0.39 0.68 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.56 6.22 -51.93 -0.32 1.24 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -32.80 329.21 -7.17 -39.97 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.73 Total: 12.20 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.32 Total: -3.60 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.80 Total: -47.78 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.14 Total: -23.03 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.80 -7.17 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891319842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.895 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds