Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.47515 * 2 1 4 4 C 1.42900 * 114.00140 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.64032 * 31.69244 * 4 3 2 6 6 C 1.55164 * 110.72271 * 155.02269 * 4 3 2 7 7 C 1.54907 * 101.58334 * 153.86348 * 6 4 3 8 8 N 1.47418 * 104.83188 * 322.99437 * 7 6 4 9 9 C 1.34783 * 125.65029 * 204.08969 * 8 7 6 10 10 O 1.21584 * 120.00506 * 174.63600 * 9 8 7 11 11 N 1.34781 * 119.99478 * 354.63898 * 9 8 7 12 12 C 1.46497 * 119.99689 * 185.05837 * 11 9 8 13 13 C 1.53000 * 109.47200 * 184.72978 * 12 11 9 14 14 C 1.50708 * 115.54848 * 305.47629 * 13 12 11 15 15 H 1.07997 * 119.99916 * 145.13628 * 14 13 12 16 16 C 1.37871 * 119.99722 * 325.13844 * 14 13 12 17 17 N 1.31515 * 120.00395 * 1.31541 * 16 14 13 18 18 Si 1.86804 * 119.99844 * 181.31922 * 16 14 13 19 19 H 1.48505 * 109.46812 * 89.99857 * 18 16 14 20 20 H 1.48497 * 109.47345 * 209.99408 * 18 16 14 21 21 H 1.48491 * 109.47192 * 330.00217 * 18 16 14 22 22 C 1.52998 * 117.50365 * 159.80581 * 13 12 11 23 23 C 1.53000 * 117.50180 * 91.14525 * 13 12 11 24 24 C 1.47026 * 108.70510 * 24.12650 * 8 7 6 25 25 H 1.08999 * 109.46737 * 300.00485 * 1 2 3 26 26 H 1.09002 * 109.46993 * 60.00000 * 1 2 3 27 27 H 1.09002 * 109.47472 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46639 * 239.99559 * 2 1 3 29 29 H 1.08997 * 109.47166 * 120.00454 * 2 1 3 30 30 H 1.09002 * 111.00341 * 271.94473 * 6 4 3 31 31 H 1.09004 * 111.00107 * 35.79432 * 6 4 3 32 32 H 1.08995 * 110.36699 * 204.15594 * 7 6 4 33 33 H 1.09008 * 110.36363 * 81.82988 * 7 6 4 34 34 H 0.96998 * 119.99926 * 5.05001 * 11 9 8 35 35 H 1.09006 * 109.47122 * 304.72284 * 12 11 9 36 36 H 1.09000 * 109.47574 * 64.72723 * 12 11 9 37 37 H 0.96998 * 120.00378 * 185.01195 * 17 16 14 38 38 H 1.09004 * 117.49732 * 359.97438 * 22 13 12 39 39 H 1.08998 * 117.50317 * 145.01946 * 22 13 12 40 40 H 1.09006 * 117.50169 * 214.98457 * 23 13 12 41 41 H 1.09003 * 117.49578 * 359.97438 * 23 13 12 42 42 H 1.09001 * 109.88235 * 239.52081 * 24 8 7 43 43 H 1.08998 * 110.00955 * 118.43111 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.8827 0.6249 -0.5350 6 6 3.8747 2.8146 -0.6122 7 6 5.2458 3.0326 0.0750 8 7 5.0662 2.5215 1.4460 9 6 5.7865 2.8921 2.5232 10 8 5.4880 2.4773 3.6264 11 7 6.8379 3.7228 2.3774 12 6 7.6875 4.0379 3.5285 13 6 8.7272 5.0848 3.1236 14 6 9.5713 4.7332 1.9257 15 1 9.8873 5.5071 1.2419 16 6 9.9400 3.4235 1.7027 17 7 9.5336 2.4775 2.5209 18 14 11.0170 2.9928 0.2384 19 1 12.4458 3.0669 0.6361 20 1 10.7016 1.6160 -0.2201 21 1 10.7598 3.9530 -0.8647 22 6 9.3893 5.8923 4.2418 23 6 8.3617 6.5572 3.3226 24 6 3.9717 1.5397 1.4437 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9877 2.7359 -1.6935 31 1 3.1759 3.6092 -0.3507 32 1 5.4955 4.0933 0.0953 33 1 6.0228 2.4687 -0.4413 34 1 7.0320 4.1118 1.5103 35 1 7.0720 4.4311 4.3376 36 1 8.1946 3.1333 3.8643 37 1 9.8514 1.5682 2.4070 38 1 9.0840 5.6779 5.2660 39 1 10.4353 6.1695 4.1110 40 1 8.7321 7.2715 2.5873 41 1 7.3804 6.7799 3.7416 42 1 3.1803 1.8653 2.1187 43 1 4.3453 0.5640 1.7541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922304533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -46.007582 kcal Electronic energy + Delta-G solvation = -22913.322611 eV Core-core repulsion = 19573.660363 eV Total energy + Delta-G solvation = -3339.662248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79058 -38.33719 -36.83813 -35.97317 -32.97586 -32.18496 -31.68702 -30.11467 -28.38453 -25.89584 -25.15325 -23.30946 -22.56850 -21.22628 -21.08939 -19.23300 -19.12802 -17.67324 -17.18724 -16.29355 -15.74287 -15.28111 -15.06979 -14.79575 -14.58428 -14.01481 -13.78345 -13.22674 -13.09831 -12.94044 -12.82062 -12.53243 -12.32448 -12.14133 -11.78430 -11.67718 -11.46746 -11.32247 -11.28094 -11.10761 -10.74543 -10.68107 -10.51038 -10.24678 -9.71883 -9.68818 -9.28391 -8.97517 -8.85058 -8.32031 -8.23405 -7.61541 -5.99249 -4.19885 3.10907 3.20087 3.28839 3.29909 3.62966 4.06936 4.28128 4.47744 4.58389 4.81699 4.87250 4.90800 5.04038 5.12630 5.17720 5.25162 5.39368 5.50482 5.53555 5.68542 5.73028 5.79862 5.81894 5.93514 6.00759 6.05553 6.10573 6.34321 6.57535 6.64458 6.65504 6.78186 6.92732 7.07937 7.12779 7.28302 7.59064 7.73787 7.82621 8.00821 8.32983 8.76608 8.97894 9.43135 9.51799 10.89359 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020619 B = 0.004370 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.615610 B = 6405.703351 C = 7073.464956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.374 6.374 4 C 0.077 3.923 5 H 0.077 0.923 6 C -0.124 4.124 7 C 0.103 3.897 8 N -0.641 5.641 9 C 0.719 3.281 10 O -0.607 6.607 11 N -0.698 5.698 12 C 0.183 3.817 13 C 0.036 3.964 14 C -0.497 4.497 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.866 5.866 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.198 4.198 23 C -0.212 4.212 24 C 0.111 3.889 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.020 0.980 36 H 0.110 0.890 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 -3.272 -8.048 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.293 6.293 4 C 0.019 3.981 5 H 0.095 0.905 6 C -0.163 4.163 7 C -0.020 4.020 8 N -0.383 5.383 9 C 0.421 3.579 10 O -0.487 6.487 11 N -0.348 5.348 12 C 0.059 3.941 13 C 0.036 3.964 14 C -0.534 4.534 15 H 0.079 0.921 16 C -0.130 4.130 17 N -0.502 5.502 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.236 4.236 23 C -0.249 4.249 24 C -0.014 4.014 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.229 0.771 35 H 0.038 0.962 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.689 -3.619 -7.143 15.005 hybrid contribution 1.030 -0.293 -1.121 1.550 sum -11.660 -3.913 -8.263 14.817 Atomic orbital electron populations 1.21741 0.93766 1.02173 1.03133 1.22541 0.95585 0.83895 1.00274 1.87940 1.20093 1.26407 1.94837 1.23126 0.81222 0.98676 0.95115 0.90459 1.22839 0.96571 0.96732 1.00111 1.22187 0.96560 1.00260 0.83010 1.47337 1.37660 1.45891 1.07398 1.15471 0.79947 0.79977 0.82496 1.90830 1.72495 1.61697 1.23661 1.44834 1.27594 1.47980 1.14424 1.20955 0.88439 1.00318 0.84371 1.19240 0.95422 0.86559 0.95227 1.20524 1.32253 0.92812 1.07815 0.92123 1.25000 0.95424 0.96172 0.96394 1.69889 1.41633 1.01600 1.37079 0.86590 0.80969 0.77690 0.82802 1.20567 1.21226 1.19791 1.22934 0.96899 1.08712 0.95085 1.22950 0.98205 0.99752 1.04035 1.22048 0.89909 0.92615 0.96838 0.91755 0.91937 0.91177 0.93317 0.93094 0.89567 0.89559 0.90287 0.91412 0.77067 0.96184 0.87245 0.92763 0.91437 0.90225 0.90691 0.91346 0.91082 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.50 6.53 37.16 0.24 0.74 16 3 O -0.37 -4.50 10.07 -35.23 -0.35 -4.86 16 4 C 0.08 0.93 3.40 -24.90 -0.08 0.84 16 5 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 6 C -0.12 -1.40 6.81 -24.58 -0.17 -1.57 16 7 C 0.10 1.46 6.51 -2.53 -0.02 1.44 16 8 N -0.64 -11.57 3.33 -176.24 -0.59 -12.16 16 9 C 0.72 16.28 8.48 -86.91 -0.74 15.54 16 10 O -0.61 -15.89 16.66 5.29 0.09 -15.80 16 11 N -0.70 -15.77 5.13 -65.22 -0.33 -16.10 16 12 C 0.18 4.48 4.63 -4.04 -0.02 4.46 16 13 C 0.04 0.87 2.06 -155.66 -0.32 0.55 16 14 C -0.50 -12.57 8.31 -34.44 -0.29 -12.86 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 17 N -0.87 -23.06 10.20 55.43 0.57 -22.49 16 18 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.20 -4.37 9.96 -26.70 -0.27 -4.64 16 23 C -0.21 -4.49 9.92 -26.70 -0.26 -4.76 16 24 C 0.11 1.72 6.65 -3.07 -0.02 1.70 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.39 8.11 -51.92 -0.42 -0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.08 7.43 -51.93 -0.39 0.69 16 33 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 34 H 0.40 8.49 6.51 -40.82 -0.27 8.23 16 35 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 36 H 0.11 3.04 5.90 -51.93 -0.31 2.73 16 37 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -30.02 350.85 -9.25 -39.27 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.24 Total: 9.60 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.65 Total: 2.45 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.35 Total: -50.75 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.27 Total: -20.65 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.02 -9.25 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922304533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.737 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds