Wall clock time and date at job start Tue Mar 31 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.47515 * 2 1 4 4 C 1.42900 * 114.00140 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.64032 * 31.69244 * 4 3 2 6 6 C 1.55164 * 110.72271 * 155.02269 * 4 3 2 7 7 C 1.54907 * 101.58334 * 153.86348 * 6 4 3 8 8 N 1.47418 * 104.83188 * 322.99437 * 7 6 4 9 9 C 1.34783 * 125.65029 * 204.08969 * 8 7 6 10 10 O 1.21584 * 120.00506 * 174.63600 * 9 8 7 11 11 N 1.34781 * 119.99478 * 354.63898 * 9 8 7 12 12 C 1.46497 * 119.99689 * 185.05837 * 11 9 8 13 13 C 1.53000 * 109.47200 * 184.72978 * 12 11 9 14 14 C 1.50708 * 115.54848 * 305.47629 * 13 12 11 15 15 H 1.07997 * 119.99916 * 145.13628 * 14 13 12 16 16 C 1.37871 * 119.99722 * 325.13844 * 14 13 12 17 17 N 1.31515 * 120.00395 * 1.31541 * 16 14 13 18 18 Si 1.86804 * 119.99844 * 181.31922 * 16 14 13 19 19 H 1.48505 * 109.46812 * 89.99857 * 18 16 14 20 20 H 1.48497 * 109.47345 * 209.99408 * 18 16 14 21 21 H 1.48491 * 109.47192 * 330.00217 * 18 16 14 22 22 C 1.52998 * 117.50365 * 159.80581 * 13 12 11 23 23 C 1.53000 * 117.50180 * 91.14525 * 13 12 11 24 24 C 1.47026 * 108.70510 * 24.12650 * 8 7 6 25 25 H 1.08999 * 109.46737 * 300.00485 * 1 2 3 26 26 H 1.09002 * 109.46993 * 60.00000 * 1 2 3 27 27 H 1.09002 * 109.47472 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46639 * 239.99559 * 2 1 3 29 29 H 1.08997 * 109.47166 * 120.00454 * 2 1 3 30 30 H 1.09002 * 111.00341 * 271.94473 * 6 4 3 31 31 H 1.09004 * 111.00107 * 35.79432 * 6 4 3 32 32 H 1.08995 * 110.36699 * 204.15594 * 7 6 4 33 33 H 1.09008 * 110.36363 * 81.82988 * 7 6 4 34 34 H 0.96998 * 119.99926 * 5.05001 * 11 9 8 35 35 H 1.09006 * 109.47122 * 304.72284 * 12 11 9 36 36 H 1.09000 * 109.47574 * 64.72723 * 12 11 9 37 37 H 0.96998 * 120.00378 * 185.01195 * 17 16 14 38 38 H 1.09004 * 117.49732 * 359.97438 * 22 13 12 39 39 H 1.08998 * 117.50317 * 145.01946 * 22 13 12 40 40 H 1.09006 * 117.50169 * 214.98457 * 23 13 12 41 41 H 1.09003 * 117.49578 * 359.97438 * 23 13 12 42 42 H 1.09001 * 109.88235 * 239.52081 * 24 8 7 43 43 H 1.08998 * 110.00955 * 118.43111 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.8827 0.6249 -0.5350 6 6 3.8747 2.8146 -0.6122 7 6 5.2458 3.0326 0.0750 8 7 5.0662 2.5215 1.4460 9 6 5.7865 2.8921 2.5232 10 8 5.4880 2.4773 3.6264 11 7 6.8379 3.7228 2.3774 12 6 7.6875 4.0379 3.5285 13 6 8.7272 5.0848 3.1236 14 6 9.5713 4.7332 1.9257 15 1 9.8873 5.5071 1.2419 16 6 9.9400 3.4235 1.7027 17 7 9.5336 2.4775 2.5209 18 14 11.0170 2.9928 0.2384 19 1 12.4458 3.0669 0.6361 20 1 10.7016 1.6160 -0.2201 21 1 10.7598 3.9530 -0.8647 22 6 9.3893 5.8923 4.2418 23 6 8.3617 6.5572 3.3226 24 6 3.9717 1.5397 1.4437 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9877 2.7359 -1.6935 31 1 3.1759 3.6092 -0.3507 32 1 5.4955 4.0933 0.0953 33 1 6.0228 2.4687 -0.4413 34 1 7.0320 4.1118 1.5103 35 1 7.0720 4.4311 4.3376 36 1 8.1946 3.1333 3.8643 37 1 9.8514 1.5682 2.4070 38 1 9.0840 5.6779 5.2660 39 1 10.4353 6.1695 4.1110 40 1 8.7321 7.2715 2.5873 41 1 7.3804 6.7799 3.7416 42 1 3.1803 1.8653 2.1187 43 1 4.3453 0.5640 1.7541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922304533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:26 Heat of formation + Delta-G solvation = -64.392279 kcal Electronic energy + Delta-G solvation = -22914.119831 eV Core-core repulsion = 19573.660363 eV Total energy + Delta-G solvation = -3340.459468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23515 -39.63409 -38.50491 -37.32604 -34.79520 -34.10853 -32.64646 -31.18502 -29.60670 -27.75256 -26.95748 -24.42362 -23.52019 -22.94872 -22.14136 -21.11293 -20.72236 -19.25612 -18.20630 -18.03315 -16.96682 -16.78220 -16.61545 -16.35872 -15.81490 -15.49128 -15.24720 -14.81008 -14.49223 -14.33108 -13.98160 -13.78930 -13.57043 -13.42538 -13.20637 -13.07068 -12.91229 -12.67287 -12.56211 -12.27745 -12.26052 -12.10602 -12.03543 -11.63209 -11.53446 -11.16538 -10.88190 -10.68553 -10.58781 -10.16521 -9.94250 -9.31217 -7.92190 -6.18851 1.44117 1.48319 1.56330 1.68560 2.31022 2.43695 2.68460 3.01697 3.31136 3.54021 3.56543 3.69679 4.00079 4.19367 4.22673 4.27862 4.28551 4.39743 4.52037 4.54302 4.60510 4.64483 4.74768 4.77384 4.81560 4.91928 4.94313 4.96345 5.05996 5.09713 5.13264 5.25995 5.30009 5.41027 5.53355 5.61038 5.93256 5.98000 6.17122 6.25141 6.39417 6.82965 7.23537 7.46489 7.75233 8.94399 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020619 B = 0.004370 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.615610 B = 6405.703351 C = 7073.464956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.387 6.387 4 C 0.089 3.911 5 H 0.100 0.900 6 C -0.111 4.111 7 C 0.096 3.904 8 N -0.641 5.641 9 C 0.711 3.289 10 O -0.652 6.652 11 N -0.693 5.693 12 C 0.195 3.805 13 C 0.009 3.991 14 C -0.504 4.504 15 H 0.061 0.939 16 C 0.036 3.964 17 N -0.892 5.892 18 Si 0.951 3.049 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.261 1.261 22 C -0.198 4.198 23 C -0.187 4.187 24 C 0.105 3.895 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.400 0.600 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.256 0.744 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 -2.923 -10.548 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.306 6.306 4 C 0.030 3.970 5 H 0.118 0.882 6 C -0.148 4.148 7 C -0.026 4.026 8 N -0.381 5.381 9 C 0.413 3.587 10 O -0.536 6.536 11 N -0.344 5.344 12 C 0.071 3.929 13 C 0.008 3.992 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.166 4.166 17 N -0.529 5.529 18 Si 0.778 3.222 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.185 1.185 22 C -0.236 4.236 23 C -0.225 4.225 24 C -0.019 4.019 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.236 0.764 35 H 0.029 0.971 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.214 -3.252 -9.701 16.712 hybrid contribution 1.142 -0.409 -0.304 1.250 sum -12.072 -3.662 -10.005 16.101 Atomic orbital electron populations 1.21759 0.92682 1.03397 1.02746 1.22785 0.96551 0.82824 1.01015 1.87936 1.19771 1.28162 1.94690 1.23064 0.81536 1.00021 0.92384 0.88216 1.22821 0.94306 0.96033 1.01687 1.22484 0.98812 1.00458 0.80886 1.47361 1.37097 1.45727 1.07912 1.15694 0.80213 0.79776 0.83033 1.90781 1.73703 1.63172 1.25919 1.44667 1.27415 1.48199 1.14120 1.20614 0.88396 0.99025 0.84862 1.19274 0.96063 0.87926 0.95925 1.20713 1.32310 0.92942 1.08193 0.92100 1.25613 0.96456 0.96044 0.98450 1.70078 1.42664 1.01523 1.38652 0.85656 0.78979 0.77281 0.80326 1.20956 1.21583 1.18522 1.22964 0.97317 1.08151 0.95203 1.22940 0.98421 0.97823 1.03281 1.22250 0.88740 0.91395 0.99555 0.92793 0.91644 0.89189 0.91433 0.93467 0.86066 0.89818 0.89936 0.90670 0.76424 0.97142 0.90701 0.93405 0.90803 0.90115 0.89492 0.90218 0.92830 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.04 0.74 6.53 71.98 0.47 1.21 16 3 O -0.39 -8.56 10.07 -148.98 -1.50 -10.06 16 4 C 0.09 1.94 3.40 31.78 0.11 2.05 16 5 H 0.10 1.78 7.88 -2.39 -0.02 1.76 16 6 C -0.11 -2.18 6.81 31.99 0.22 -1.96 16 7 C 0.10 2.53 6.51 86.86 0.57 3.10 16 8 N -0.64 -23.14 3.33 -829.77 -2.76 -25.90 16 9 C 0.71 33.00 8.48 179.05 1.52 34.51 16 10 O -0.65 -35.56 16.66 -3.98 -0.07 -35.62 16 11 N -0.69 -31.81 5.13 -478.53 -2.45 -34.26 16 12 C 0.20 9.82 4.63 86.38 0.40 10.22 16 13 C 0.01 0.42 2.06 -52.93 -0.11 0.31 16 14 C -0.50 -25.19 8.31 25.60 0.21 -24.97 16 15 H 0.06 2.99 7.81 -2.91 -0.02 2.96 16 16 C 0.04 1.81 5.29 84.65 0.45 2.26 16 17 N -0.89 -48.27 10.20 21.45 0.22 -48.05 16 18 Si 0.95 40.21 29.54 68.60 2.03 42.24 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.20 -8.59 9.96 30.62 0.30 -8.28 16 23 C -0.19 -7.63 9.92 30.62 0.30 -7.33 16 24 C 0.10 3.26 6.65 86.73 0.58 3.84 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.89 8.11 -2.38 -0.02 0.87 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 2.12 7.43 -2.39 -0.02 2.10 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.40 17.19 6.51 -92.71 -0.60 16.59 16 35 H 0.01 0.53 8.05 -2.38 -0.02 0.51 16 36 H 0.08 4.33 5.90 -2.39 -0.01 4.31 16 37 H 0.26 13.63 8.32 -92.71 -0.77 12.86 16 38 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.08 3.45 8.14 -2.39 -0.02 3.44 16 40 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 41 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -65.52 350.85 1.60 -63.91 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.38 Total: 34.10 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.76 Total: 13.64 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -4.99 Total: -108.21 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.57 Total: -45.68 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -65.52 1.60 -63.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922304533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.479 kcal (2) G-P(sol) polarization free energy of solvation -65.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds