Wall clock time and date at job start Tue Mar 31 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47134 * 2 1 4 4 N 1.46504 * 109.47007 * 120.00413 * 2 1 3 5 5 C 1.34766 * 119.99775 * 278.50454 * 4 2 1 6 6 O 1.21589 * 120.00600 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99910 * 180.02562 * 5 4 2 8 8 C 1.46504 * 120.00047 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46767 * 184.79303 * 8 7 5 10 10 C 1.50704 * 115.55228 * 294.74504 * 9 8 7 11 11 H 1.07996 * 119.99614 * 95.14579 * 10 9 8 12 12 C 1.37872 * 120.00272 * 274.88106 * 10 9 8 13 13 N 1.31523 * 119.99693 * 355.41178 * 12 10 9 14 14 Si 1.86796 * 120.00163 * 175.41796 * 12 10 9 15 15 H 1.48496 * 109.47077 * 59.99787 * 14 12 10 16 16 H 1.48503 * 109.46873 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47190 * 299.99554 * 14 12 10 18 18 C 1.53002 * 117.50235 * 80.42262 * 9 8 7 19 19 C 1.53001 * 117.49863 * 149.08095 * 9 8 7 20 20 C 1.53001 * 109.46891 * 240.00069 * 2 1 3 21 21 C 1.53003 * 115.54894 * 184.47773 * 20 2 1 22 22 O 1.42897 * 109.47106 * 298.37005 * 21 20 2 23 23 C 1.52999 * 117.49740 * 38.81585 * 20 2 1 24 24 C 1.52999 * 117.50149 * 330.15244 * 20 2 1 25 25 H 1.09005 * 109.46487 * 59.99490 * 1 2 3 26 26 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47025 * 299.99863 * 1 2 3 28 28 H 0.96999 * 119.99734 * 98.50052 * 4 2 1 29 29 H 0.96999 * 119.99600 * 359.97438 * 7 5 4 30 30 H 1.08995 * 109.47137 * 64.78806 * 8 7 5 31 31 H 1.08998 * 109.46505 * 304.78598 * 8 7 5 32 32 H 0.97002 * 119.99802 * 185.00039 * 13 12 10 33 33 H 1.08998 * 117.49863 * 215.00304 * 18 9 8 34 34 H 1.08996 * 117.49414 * 0.02562 * 18 9 8 35 35 H 1.09006 * 117.50021 * 359.97405 * 19 9 8 36 36 H 1.08997 * 117.50214 * 144.97140 * 19 9 8 37 37 H 1.09002 * 109.46859 * 58.36343 * 21 20 2 38 38 H 1.08998 * 109.47025 * 178.36883 * 21 20 2 39 39 H 0.96706 * 114.00148 * 180.02562 * 22 21 20 40 40 H 1.09001 * 117.50262 * 359.97438 * 23 20 2 41 41 H 1.08998 * 117.50103 * 145.02007 * 23 20 2 42 42 H 1.08997 * 117.49455 * 214.97717 * 24 20 2 43 43 H 1.08995 * 117.49975 * 359.97438 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.0802 -0.0375 2.3733 6 8 1.7312 1.1251 2.4427 7 7 2.5299 -0.6728 3.4737 8 6 2.5977 0.0374 4.7533 9 6 3.2491 -0.8648 5.8033 10 6 2.4734 -2.1048 6.1663 11 1 2.6921 -3.0415 5.6754 12 6 1.4882 -2.0445 7.1290 13 7 1.2864 -0.9281 7.7943 14 14 0.4404 -3.5485 7.4885 15 1 1.3124 -4.6637 7.9368 16 1 -0.5386 -3.2257 8.5574 17 1 -0.2854 -3.9519 6.2574 18 6 4.7761 -0.9618 5.8021 19 6 4.0588 -0.1885 6.9114 20 6 2.0400 -0.7212 -1.2493 21 6 3.5574 -0.8963 -1.3370 22 8 4.1841 0.3876 -1.3666 23 6 1.2784 -0.4937 -2.5566 24 6 1.1657 -1.8354 -1.8282 25 1 -0.3632 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2971 -1.6181 1.1408 29 1 2.8087 -1.6002 3.4183 30 1 1.5907 0.3019 5.0758 31 1 3.1912 0.9439 4.6346 32 1 0.6439 -0.9058 8.5207 33 1 5.2195 -1.9225 6.0638 34 1 5.3165 -0.3825 5.0535 35 1 4.1278 0.8992 6.8921 36 1 4.0301 -0.6401 7.9030 37 1 3.9098 -1.4525 -0.4683 38 1 3.8081 -1.4441 -2.2454 39 1 5.1489 0.3532 -1.4224 40 1 0.4139 0.1694 -2.5267 41 1 1.8584 -0.4693 -3.4792 42 1 1.6716 -2.6929 -2.2718 43 1 0.2274 -2.0549 -1.3189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922308852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:29 Heat of formation + Delta-G solvation = -32.891330 kcal Electronic energy + Delta-G solvation = -22770.981144 eV Core-core repulsion = 19431.887659 eV Total energy + Delta-G solvation = -3339.093485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97342 -38.60510 -36.69881 -36.10813 -33.85996 -33.17451 -31.93146 -29.70517 -27.50579 -26.08312 -25.03237 -23.35349 -22.70815 -21.13957 -20.12400 -19.34894 -19.12058 -17.64688 -17.47141 -16.49913 -15.87145 -15.37335 -15.16758 -14.71170 -14.52934 -14.11120 -14.06257 -13.74148 -13.22815 -13.01623 -12.82534 -12.57030 -12.21127 -11.97034 -11.62885 -11.49270 -11.22955 -11.08855 -10.95560 -10.93596 -10.65576 -10.53279 -10.20847 -10.18137 -9.98632 -9.61387 -9.39559 -9.00610 -8.74804 -8.45480 -8.19860 -7.92410 -6.04804 -4.14517 3.11199 3.27558 3.33778 3.34610 3.57038 3.88413 4.12051 4.36451 4.49681 4.56150 4.68631 4.89468 4.99463 5.18922 5.23075 5.32370 5.38345 5.42613 5.48783 5.62137 5.65148 5.72205 5.92141 5.94694 6.06714 6.18871 6.38652 6.40044 6.52390 6.64250 6.73932 6.90214 6.92990 7.15410 7.39686 7.46165 7.48263 7.51416 7.68804 7.83173 8.36998 8.74481 8.86498 9.29769 9.52213 11.02392 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.004193 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.203129 B = 6676.558388 C = 7282.954238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.208 3.792 3 H 0.092 0.908 4 N -0.746 5.746 5 C 0.700 3.300 6 O -0.603 6.603 7 N -0.722 5.722 8 C 0.183 3.817 9 C 0.025 3.975 10 C -0.499 4.499 11 H 0.058 0.942 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.891 3.109 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.211 4.211 19 C -0.142 4.142 20 C -0.138 4.138 21 C 0.117 3.883 22 O -0.564 6.564 23 C -0.158 4.158 24 C -0.169 4.169 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.390 0.610 29 H 0.395 0.605 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.378 0.622 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -2.675 -18.423 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.102 3.898 3 H 0.110 0.890 4 N -0.401 5.401 5 C 0.399 3.601 6 O -0.482 6.482 7 N -0.375 5.375 8 C 0.059 3.941 9 C 0.024 3.976 10 C -0.537 4.537 11 H 0.076 0.924 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.248 4.248 19 C -0.180 4.180 20 C -0.138 4.138 21 C 0.039 3.961 22 O -0.369 6.369 23 C -0.196 4.196 24 C -0.206 4.206 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.223 0.777 29 H 0.228 0.772 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.224 0.776 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.797 -1.265 -18.155 18.287 hybrid contribution 0.238 -1.940 0.276 1.974 sum 2.035 -3.205 -17.879 18.277 Atomic orbital electron populations 1.22381 0.95908 1.01973 1.02638 1.19928 0.92757 0.96527 0.80561 0.89022 1.45101 1.72051 1.15182 1.07800 1.16026 0.78775 0.84923 0.80331 1.90864 1.56284 1.15962 1.85128 1.45150 1.68482 1.15738 1.08105 1.20826 1.00727 0.92425 0.80101 1.19052 0.87326 0.96577 0.94651 1.20290 1.17526 0.93241 1.22593 0.92377 1.24981 0.96556 0.95678 0.95846 1.69986 1.34738 1.25656 1.20662 0.86694 0.80372 0.83116 0.77978 1.20344 1.21284 1.20231 1.23003 0.97855 1.01076 1.02889 1.22460 1.04502 0.96103 0.94929 1.21645 0.92572 1.04056 0.95563 1.21530 0.90255 0.84988 0.99350 1.86527 1.24085 1.28892 1.97410 1.23057 1.02414 0.99433 0.94649 1.23193 1.01668 0.92325 1.03400 0.91957 0.92385 0.91353 0.77692 0.77170 0.91830 0.94484 0.92843 0.90510 0.91764 0.91815 0.89553 0.93074 0.93798 0.77553 0.88069 0.88637 0.88717 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 8.49 37.16 0.32 -1.87 16 2 C 0.21 2.83 2.60 -67.93 -0.18 2.66 16 3 H 0.09 1.54 7.69 -51.93 -0.40 1.14 16 4 N -0.75 -11.07 4.72 -58.67 -0.28 -11.35 16 5 C 0.70 13.79 8.48 -86.92 -0.74 13.05 16 6 O -0.60 -14.29 15.89 5.29 0.08 -14.21 16 7 N -0.72 -14.44 5.49 -65.23 -0.36 -14.79 16 8 C 0.18 4.27 5.50 -4.04 -0.02 4.24 16 9 C 0.02 0.59 1.47 -155.66 -0.23 0.36 16 10 C -0.50 -12.86 8.60 -34.44 -0.30 -13.16 16 11 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 12 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 13 N -0.87 -24.42 12.65 55.43 0.70 -23.72 16 14 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 19 C -0.14 -3.29 9.14 -26.69 -0.24 -3.54 16 20 C -0.14 -1.42 1.94 -154.51 -0.30 -1.72 16 21 C 0.12 1.12 6.69 37.16 0.25 1.37 16 22 O -0.56 -6.25 13.54 -35.23 -0.48 -6.73 16 23 C -0.16 -1.38 9.58 -26.69 -0.26 -1.63 16 24 C -0.17 -1.39 9.52 -26.69 -0.25 -1.64 16 25 H 0.06 0.67 6.37 -51.93 -0.33 0.34 16 26 H 0.06 0.67 6.30 -51.93 -0.33 0.34 16 27 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 28 H 0.39 4.81 8.22 -40.82 -0.34 4.48 16 29 H 0.39 7.17 8.35 -40.82 -0.34 6.83 16 30 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 37 H 0.05 0.48 7.58 -51.93 -0.39 0.09 16 38 H 0.04 0.34 8.11 -51.93 -0.42 -0.08 16 39 H 0.38 2.52 9.12 45.56 0.42 2.94 16 40 H 0.10 0.86 6.41 -51.93 -0.33 0.53 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.11 0.89 6.10 -51.93 -0.32 0.57 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -31.78 353.96 -8.45 -40.23 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.12 Total: 14.36 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.31 Total: -4.74 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.07 Total: -49.86 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.39 Total: -20.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.78 -8.45 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922308852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.335 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds