Wall clock time and date at job start Tue Mar 31 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.81514 * 2 1 4 4 C 1.51498 * 109.87996 * 120.90538 * 2 1 3 5 5 O 1.20765 * 121.01862 * 345.74589 * 4 2 1 6 6 C 1.51324 * 117.95847 * 165.72103 * 4 2 1 7 7 C 1.53234 * 108.64949 * 307.40582 * 6 4 2 8 8 C 1.52620 * 109.49838 * 56.05160 * 7 6 4 9 9 N 1.46875 * 109.53694 * 301.85218 * 8 7 6 10 10 C 1.34772 * 120.71594 * 237.05732 * 9 8 7 11 11 O 1.21589 * 120.00509 * 185.71082 * 10 9 8 12 12 N 1.34781 * 119.99949 * 5.43943 * 10 9 8 13 13 C 1.46506 * 120.00089 * 174.99685 * 12 10 9 14 14 C 1.52999 * 109.47348 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46864 * 300.00016 * 14 13 12 16 16 C 1.53004 * 109.46837 * 59.99748 * 14 13 12 17 17 C 1.50692 * 109.47281 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99892 * 2.05453 * 17 14 13 19 19 C 1.37872 * 120.00203 * 182.05989 * 17 14 13 20 20 N 1.31513 * 119.99977 * 3.91224 * 19 17 14 21 21 Si 1.86808 * 120.00342 * 183.91040 * 19 17 14 22 22 H 1.48497 * 109.46717 * 94.99886 * 21 19 17 23 23 H 1.48495 * 109.46939 * 214.99838 * 21 19 17 24 24 H 1.48498 * 109.46728 * 335.00119 * 21 19 17 25 25 H 1.09002 * 109.46927 * 171.34054 * 1 2 3 26 26 H 1.08999 * 109.47337 * 291.34255 * 1 2 3 27 27 H 1.09001 * 109.47046 * 51.34850 * 1 2 3 28 28 H 1.08994 * 109.60510 * 67.15529 * 6 4 2 29 29 H 1.09001 * 109.60523 * 187.49417 * 6 4 2 30 30 H 1.09001 * 109.47758 * 176.16382 * 7 6 4 31 31 H 1.08998 * 109.47830 * 296.18448 * 7 6 4 32 32 H 1.09004 * 109.39709 * 181.81933 * 8 7 6 33 33 H 1.08998 * 109.34479 * 61.85864 * 8 7 6 34 34 H 0.96997 * 120.00037 * 354.99192 * 12 10 9 35 35 H 1.08999 * 109.46632 * 300.00135 * 13 12 10 36 36 H 1.08999 * 109.47023 * 59.99482 * 13 12 10 37 37 H 1.08993 * 109.47144 * 55.01854 * 15 14 13 38 38 H 1.09002 * 109.46788 * 175.01505 * 15 14 13 39 39 H 1.08995 * 109.46886 * 295.01722 * 15 14 13 40 40 H 1.08995 * 109.47051 * 60.00218 * 16 14 13 41 41 H 1.09003 * 109.46397 * 180.02562 * 16 14 13 42 42 H 1.09002 * 109.46990 * 299.99516 * 16 14 13 43 43 H 0.97000 * 120.00511 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0452 -0.7318 1.2224 5 8 1.3135 -0.9889 2.1481 6 6 3.5046 -1.1311 1.2476 7 6 3.8216 -1.9103 -0.0332 8 6 3.4537 -1.0638 -1.2487 9 7 2.0294 -0.7106 -1.1884 10 6 1.1964 -1.0351 -2.1970 11 8 0.0442 -0.6470 -2.1827 12 7 1.6421 -1.7853 -3.2242 13 6 0.7112 -2.2301 -4.2644 14 6 1.4672 -3.0586 -5.3050 15 6 2.5671 -2.2031 -5.9368 16 6 2.0954 -4.2781 -4.6274 17 6 0.5098 -3.5156 -6.3753 18 1 -0.5268 -3.2148 -6.3368 19 6 0.9571 -4.3177 -7.4036 20 7 2.2000 -4.7473 -7.4095 21 14 -0.2024 -4.7944 -8.7885 22 1 -0.0320 -3.8517 -9.9232 23 1 0.1076 -6.1745 -9.2406 24 1 -1.6044 -4.7358 -8.3025 25 1 -0.3633 -1.0160 -0.1547 26 1 -0.3634 0.3740 0.9572 27 1 -0.3633 0.6419 -0.8026 28 1 4.1273 -0.2379 1.2960 29 1 3.6970 -1.7588 2.1177 30 1 4.8854 -2.1459 -0.0613 31 1 3.2440 -2.8345 -0.0487 32 1 3.6496 -1.6318 -2.1581 33 1 4.0545 -0.1543 -1.2504 34 1 2.5791 -2.0306 -3.2748 35 1 -0.0727 -2.8391 -3.8141 36 1 0.2639 -1.3613 -4.7473 37 1 3.2086 -1.7995 -5.1535 38 1 3.1618 -2.8174 -6.6129 39 1 2.1145 -1.3830 -6.4942 40 1 1.3118 -4.8875 -4.1773 41 1 2.6344 -4.8681 -5.3688 42 1 2.7881 -3.9471 -3.8536 43 1 2.5149 -5.3113 -8.1331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922841762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:58 Heat of formation + Delta-G solvation = -53.915502 kcal Electronic energy + Delta-G solvation = -23466.234899 eV Core-core repulsion = 20126.229738 eV Total energy + Delta-G solvation = -3340.005161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84597 -39.18063 -36.82265 -36.19731 -33.71259 -32.98228 -31.46466 -30.11771 -27.31454 -25.75383 -25.70008 -25.10621 -24.08497 -22.24790 -20.52449 -19.22791 -18.79275 -17.77708 -16.41164 -16.20564 -15.83945 -15.58521 -14.98717 -14.91423 -14.61331 -14.45403 -13.78686 -13.49611 -13.27233 -12.93159 -12.75584 -12.56790 -12.31849 -12.20625 -11.95436 -11.57857 -11.52286 -11.39380 -11.29531 -11.16141 -10.87853 -10.69354 -10.40159 -10.18759 -10.01412 -9.64621 -9.37704 -9.08940 -8.79730 -8.66519 -8.42562 -8.19211 -6.02821 -4.12890 1.62732 2.80640 3.27741 3.35307 3.39671 3.47978 3.77606 4.18091 4.40001 4.49194 4.51582 4.66582 4.97625 5.03114 5.17468 5.22360 5.23542 5.34913 5.47799 5.67732 5.81636 5.86037 6.14120 6.17403 6.32832 6.35111 6.47890 6.66277 6.76953 6.78611 6.86994 7.00891 7.07482 7.11993 7.27712 7.35507 7.53787 7.68678 7.96036 8.13071 8.32524 8.39411 8.86612 8.96494 9.53100 10.98030 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.004027 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.944176 B = 6950.583032 C = 7400.021463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.120 3.880 3 H 0.097 0.903 4 C 0.352 3.648 5 O -0.443 6.443 6 C -0.169 4.169 7 C -0.130 4.130 8 C 0.105 3.895 9 N -0.631 5.631 10 C 0.703 3.297 11 O -0.584 6.584 12 N -0.732 5.732 13 C 0.149 3.851 14 C 0.055 3.945 15 C -0.125 4.125 16 C -0.133 4.133 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.392 0.608 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.006 0.994 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.025 0.975 41 H 0.094 0.906 42 H 0.001 0.999 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 7.410 13.258 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 H 0.115 0.885 4 C 0.225 3.775 5 O -0.314 6.314 6 C -0.207 4.207 7 C -0.169 4.169 8 C -0.018 4.018 9 N -0.372 5.372 10 C 0.405 3.595 11 O -0.462 6.462 12 N -0.389 5.389 13 C 0.026 3.974 14 C 0.055 3.945 15 C -0.183 4.183 16 C -0.190 4.190 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.134 4.134 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.230 0.770 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.112 0.888 42 H 0.020 0.980 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.213 7.398 13.618 16.697 hybrid contribution 0.124 -0.433 -0.837 0.951 sum 6.337 6.965 12.781 15.875 Atomic orbital electron populations 1.22018 0.90540 1.04879 1.01420 1.21693 0.97986 0.95782 0.83019 0.88542 1.25381 0.90491 0.74988 0.86690 1.90406 1.60221 1.43705 1.37020 1.22317 0.95338 1.02594 1.00413 1.21842 1.02998 0.99215 0.92849 1.21574 0.81633 0.99583 0.99006 1.47305 1.08483 1.62636 1.18825 1.15954 0.84336 0.79386 0.79818 1.90916 1.17375 1.58790 1.79154 1.45789 1.13349 1.54808 1.24914 1.21603 0.91185 0.97695 0.86893 1.18374 0.93422 0.91314 0.91429 1.21770 0.98652 0.98857 0.99018 1.21896 0.98693 0.99926 0.98511 1.20982 0.95355 1.30587 1.07455 0.92377 1.24869 0.95194 0.95421 0.97939 1.69793 1.15330 1.35144 1.32198 0.86560 0.81301 0.77674 0.82373 1.20763 1.21298 1.19852 0.91494 0.93139 0.89142 0.88165 0.89145 0.89156 0.90718 0.89289 0.90708 0.77021 0.92950 0.92791 0.97525 0.90629 0.95102 0.95549 0.88779 0.97967 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.26 37.16 0.27 -1.65 16 2 C 0.12 1.46 3.75 -68.31 -0.26 1.20 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 4 C 0.35 4.07 6.70 -28.34 -0.19 3.88 16 5 O -0.44 -6.53 16.77 5.99 0.10 -6.43 16 6 C -0.17 -1.32 6.14 -27.46 -0.17 -1.49 16 7 C -0.13 -1.02 6.07 -26.81 -0.16 -1.18 16 8 C 0.11 0.98 6.30 -4.03 -0.03 0.95 16 9 N -0.63 -8.24 2.98 -172.07 -0.51 -8.76 16 10 C 0.70 12.15 8.04 -86.92 -0.70 11.46 16 11 O -0.58 -11.88 12.20 5.29 0.06 -11.82 16 12 N -0.73 -12.79 4.83 -65.22 -0.32 -13.11 16 13 C 0.15 3.13 4.51 -4.04 -0.02 3.11 16 14 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 15 C -0.13 -2.72 8.10 37.16 0.30 -2.42 16 16 C -0.13 -2.94 8.05 37.16 0.30 -2.64 16 17 C -0.51 -13.05 8.01 -34.45 -0.28 -13.33 16 18 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.23 9.43 55.43 0.52 -22.70 16 21 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H 0.07 1.16 7.09 -51.93 -0.37 0.79 16 26 H 0.05 0.67 7.73 -51.93 -0.40 0.27 16 27 H 0.09 1.44 6.53 -51.93 -0.34 1.10 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.86 5.55 -51.93 -0.29 0.57 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.39 6.12 3.61 -40.82 -0.15 5.97 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.11 6.74 -51.93 -0.35 -0.24 16 38 H 0.07 1.81 6.52 -51.93 -0.34 1.47 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 2.31 5.77 -51.93 -0.30 2.01 16 42 H 0.00 0.03 6.86 -51.93 -0.36 -0.33 16 43 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -29.60 329.53 -7.95 -37.55 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.66 Total: 4.08 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.10 Total: 0.71 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.31 Total: -44.57 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.60 -7.95 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922841762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.362 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds