Wall clock time and date at job start Tue Mar 31 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.81961 * 2 1 4 4 C 1.51501 * 109.82363 * 239.12098 * 2 1 3 5 5 O 1.20758 * 121.02363 * 14.29177 * 4 2 1 6 6 C 1.51326 * 117.95257 * 194.31469 * 4 2 1 7 7 C 1.53230 * 108.65052 * 52.59572 * 6 4 2 8 8 C 1.53101 * 109.43817 * 303.81532 * 7 6 4 9 9 N 1.46896 * 109.25935 * 58.36671 * 8 7 6 10 10 C 1.34769 * 120.71023 * 122.91130 * 9 8 7 11 11 O 1.21580 * 120.00154 * 184.29285 * 10 9 8 12 12 N 1.34778 * 120.00080 * 4.29187 * 10 9 8 13 13 C 1.46500 * 120.00397 * 185.07200 * 12 10 9 14 14 C 1.52996 * 109.47373 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47307 * 300.00081 * 14 13 12 16 16 C 1.53001 * 109.46878 * 60.00337 * 14 13 12 17 17 C 1.50704 * 109.47049 * 180.02562 * 14 13 12 18 18 H 1.07997 * 120.00045 * 2.87150 * 17 14 13 19 19 C 1.37876 * 120.00143 * 182.86910 * 17 14 13 20 20 N 1.31511 * 120.00229 * 191.09393 * 19 17 14 21 21 Si 1.86809 * 119.99918 * 11.09668 * 19 17 14 22 22 H 1.48497 * 109.47040 * 87.20904 * 21 19 17 23 23 H 1.48499 * 109.47168 * 207.21805 * 21 19 17 24 24 H 1.48503 * 109.46543 * 327.21301 * 21 19 17 25 25 H 1.08994 * 109.47691 * 188.52489 * 1 2 3 26 26 H 1.08999 * 109.47179 * 308.52716 * 1 2 3 27 27 H 1.09007 * 109.47105 * 68.52255 * 1 2 3 28 28 H 1.09006 * 109.61039 * 292.84360 * 6 4 2 29 29 H 1.08999 * 109.74500 * 172.42856 * 6 4 2 30 30 H 1.09000 * 109.47827 * 63.81068 * 7 6 4 31 31 H 1.09005 * 109.47582 * 183.82841 * 7 6 4 32 32 H 1.09003 * 109.50398 * 178.31337 * 8 7 6 33 33 H 1.08999 * 109.50418 * 298.43692 * 8 7 6 34 34 H 0.96999 * 119.99986 * 5.07627 * 12 10 9 35 35 H 1.09000 * 109.47396 * 300.00466 * 13 12 10 36 36 H 1.09007 * 109.46758 * 60.00140 * 13 12 10 37 37 H 1.09004 * 109.46961 * 70.31880 * 15 14 13 38 38 H 1.09004 * 109.47425 * 190.32013 * 15 14 13 39 39 H 1.08995 * 109.47643 * 310.32360 * 15 14 13 40 40 H 1.09000 * 109.47009 * 60.00083 * 16 14 13 41 41 H 1.09005 * 109.46675 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47145 * 299.99805 * 16 14 13 43 43 H 0.97000 * 119.99933 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0438 -0.7315 -1.2232 5 8 1.3115 -0.9872 -2.1487 6 6 3.5028 -1.1322 -1.2493 7 6 3.8196 -1.9125 0.0308 8 6 3.4546 -1.0613 1.2499 9 7 2.0292 -0.7120 1.1877 10 6 1.1964 -1.0365 2.1964 11 8 0.0057 -0.8113 2.0980 12 7 1.6834 -1.6107 3.3142 13 6 0.7673 -2.0647 4.3634 14 6 1.5712 -2.6737 5.5139 15 6 2.3826 -3.8628 4.9958 16 6 2.5204 -1.6194 6.0869 17 6 0.6287 -3.1413 6.5929 18 1 -0.4387 -3.0590 6.4505 19 6 1.1291 -3.6742 7.7620 20 7 0.3230 -4.2793 8.6067 21 14 2.9521 -3.5366 8.1460 22 1 3.2159 -2.2513 8.8412 23 1 3.3604 -4.6654 9.0202 24 1 3.7292 -3.5839 6.8813 25 1 -0.3634 -1.0162 0.1523 26 1 -0.3633 0.6401 0.8039 27 1 -0.3634 0.3763 -0.9564 28 1 4.1265 -0.2395 -1.2974 29 1 3.6965 -1.7609 -2.1184 30 1 3.2411 -2.8362 0.0460 31 1 4.8833 -2.1493 0.0582 32 1 3.6516 -1.6268 2.1607 33 1 4.0529 -0.1502 1.2499 34 1 2.6406 -1.7233 3.4240 35 1 0.1895 -1.2175 4.7329 36 1 0.0907 -2.8155 3.9551 37 1 3.1855 -3.5022 4.3528 38 1 2.8087 -4.4069 5.8388 39 1 1.7318 -4.5265 4.4267 40 1 1.9423 -0.7723 6.4561 41 1 3.0928 -2.0532 6.9069 42 1 3.2020 -1.2816 5.3063 43 1 0.6752 -4.6545 9.4290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922841763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:01 Heat of formation + Delta-G solvation = -32.274929 kcal Electronic energy + Delta-G solvation = -23542.343421 eV Core-core repulsion = 20203.276666 eV Total energy + Delta-G solvation = -3339.066756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.93568 -39.28325 -37.12840 -36.35283 -33.80608 -33.05914 -31.76564 -30.54624 -27.39757 -26.44715 -25.99572 -25.01174 -24.24698 -22.34989 -20.60172 -19.42690 -19.08985 -17.77121 -16.48507 -16.31611 -16.09108 -15.64330 -15.36558 -15.05316 -14.86813 -14.47098 -13.96027 -13.71213 -13.38081 -13.08947 -12.93095 -12.74640 -12.64067 -12.35259 -12.22523 -12.09982 -11.99528 -11.68064 -11.61972 -11.39861 -11.23664 -10.43832 -10.28976 -10.19768 -10.10417 -10.06490 -9.19841 -9.08715 -8.74336 -8.70002 -8.54042 -8.35427 -6.15485 -4.14293 1.57194 2.70257 3.21480 3.27745 3.36396 3.37921 3.69543 4.07096 4.33165 4.40525 4.42952 4.58405 4.88817 4.95081 5.09892 5.14234 5.15183 5.25960 5.38934 5.60224 5.71601 5.73121 5.81285 6.00152 6.04748 6.13552 6.20362 6.31099 6.40740 6.49644 6.56557 6.62983 6.67490 6.79956 6.93570 6.99769 7.19578 7.21140 7.40209 7.69831 8.16330 8.44132 8.83070 8.89645 9.47254 10.97632 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031286 B = 0.004308 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.740569 B = 6497.320327 C = 6989.264418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.120 3.880 3 H 0.097 0.903 4 C 0.352 3.648 5 O -0.442 6.442 6 C -0.169 4.169 7 C -0.129 4.129 8 C 0.105 3.895 9 N -0.630 5.630 10 C 0.704 3.296 11 O -0.579 6.579 12 N -0.737 5.737 13 C 0.159 3.841 14 C 0.028 3.972 15 C -0.141 4.141 16 C -0.145 4.145 17 C -0.511 4.511 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.886 3.114 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.248 1.248 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.390 0.610 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.041 0.959 42 H 0.028 0.972 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.397 7.644 -16.484 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.015 3.985 3 H 0.114 0.886 4 C 0.225 3.775 5 O -0.312 6.312 6 C -0.207 4.207 7 C -0.168 4.168 8 C -0.018 4.018 9 N -0.372 5.372 10 C 0.406 3.594 11 O -0.457 6.457 12 N -0.394 5.394 13 C 0.036 3.964 14 C 0.026 3.974 15 C -0.198 4.198 16 C -0.202 4.202 17 C -0.549 4.549 18 H 0.095 0.905 19 C -0.128 4.128 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.174 1.174 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.043 7.533 -16.849 21.012 hybrid contribution 1.702 -0.008 0.554 1.790 sum 11.745 7.525 -16.294 21.449 Atomic orbital electron populations 1.22026 0.90330 1.05244 1.00985 1.21728 0.98134 0.95653 0.83004 0.88562 1.25355 0.90423 0.75060 0.86711 1.90410 1.60114 1.43655 1.37008 1.22319 0.95406 1.02589 1.00388 1.21912 1.02917 0.99144 0.92826 1.21685 0.81610 0.99556 0.98994 1.47288 1.08497 1.62697 1.18693 1.15928 0.84820 0.78634 0.80030 1.90962 1.13982 1.59965 1.80789 1.45775 1.10848 1.64277 1.18476 1.21405 0.91112 0.98276 0.85572 1.18741 0.93749 0.91586 0.93285 1.22299 0.98069 0.99571 0.99867 1.22342 0.98834 1.00045 0.99011 1.20720 0.93979 1.41026 0.99162 0.90479 1.24983 0.97625 0.93988 0.96213 1.69927 1.35620 1.35977 1.11444 0.87279 0.86820 0.76223 0.77772 1.21446 1.23404 1.17418 0.90654 0.89904 0.93289 0.88159 0.89119 0.90714 0.89233 0.89381 0.90679 0.77271 0.91969 0.92124 0.96177 0.92508 0.93429 0.92713 0.94102 0.95342 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 7.24 37.16 0.27 -1.53 16 2 C 0.12 1.35 3.75 -68.31 -0.26 1.10 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.35 3.83 6.69 -28.33 -0.19 3.64 16 5 O -0.44 -6.26 16.76 6.00 0.10 -6.16 16 6 C -0.17 -1.20 6.14 -27.46 -0.17 -1.37 16 7 C -0.13 -0.89 6.09 -26.56 -0.16 -1.05 16 8 C 0.10 0.85 6.29 -3.77 -0.02 0.83 16 9 N -0.63 -7.56 2.98 -171.77 -0.51 -8.07 16 10 C 0.70 11.31 8.18 -86.92 -0.71 10.60 16 11 O -0.58 -11.24 11.94 5.30 0.06 -11.18 16 12 N -0.74 -11.69 4.89 -65.23 -0.32 -12.01 16 13 C 0.16 3.11 4.49 -4.04 -0.02 3.09 16 14 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 15 C -0.14 -2.75 7.48 37.16 0.28 -2.47 16 16 C -0.15 -2.85 7.50 37.16 0.28 -2.57 16 17 C -0.51 -13.48 8.62 -34.44 -0.30 -13.78 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.04 5.35 -17.82 -0.10 1.94 16 20 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 21 Si 0.89 20.64 22.75 -169.99 -3.87 16.78 16 22 H -0.29 -6.67 7.10 56.52 0.40 -6.27 16 23 H -0.31 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.25 -5.19 4.57 56.52 0.26 -4.93 16 25 H 0.07 1.27 6.79 -51.93 -0.35 0.91 16 26 H 0.08 1.26 6.79 -51.93 -0.35 0.90 16 27 H 0.05 0.63 7.74 -51.92 -0.40 0.23 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.72 5.64 -51.93 -0.29 0.42 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.39 5.30 3.81 -40.82 -0.16 5.14 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 37 H 0.02 0.32 7.15 -51.93 -0.37 -0.06 16 38 H 0.06 1.19 4.31 -51.93 -0.22 0.97 16 39 H 0.05 0.93 8.11 -51.93 -0.42 0.50 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.85 2.23 -51.93 -0.12 0.73 16 42 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -31.97 319.40 -6.67 -38.64 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.55 Total: 3.93 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.17 Total: -1.07 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.06 Total: -45.75 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.16 Total: -17.34 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -3.87 Total: 16.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.97 -6.67 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922841763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.367 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds