Wall clock time and date at job start Tue Mar 31 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47453 * 2 1 4 4 C 1.34524 * 126.68691 * 270.31134 * 3 2 1 5 5 O 1.21536 * 123.77396 * 359.94324 * 4 3 2 6 6 N 1.33793 * 112.45639 * 180.12655 * 4 3 2 7 7 C 1.46500 * 124.17996 * 179.86125 * 6 4 3 8 8 C 1.52997 * 109.47007 * 269.69678 * 7 6 4 9 9 C 1.53006 * 109.47127 * 60.00219 * 8 7 6 10 10 C 1.52997 * 109.47232 * 300.00097 * 8 7 6 11 11 C 1.50699 * 109.47078 * 179.97438 * 8 7 6 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99908 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00364 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99946 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46997 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47438 * 119.99776 * 15 13 11 18 18 H 1.48494 * 109.47197 * 239.99736 * 15 13 11 19 19 C 1.34765 * 111.64291 * 359.59216 * 6 4 3 20 20 O 1.21240 * 127.16196 * 180.26581 * 19 6 4 21 21 C 1.47306 * 126.68809 * 90.00046 * 3 2 1 22 22 C 1.52995 * 110.60045 * 61.51149 * 21 3 2 23 23 C 1.53001 * 110.59863 * 298.55856 * 21 3 2 24 24 H 1.09002 * 109.46831 * 59.99841 * 1 2 3 25 25 H 1.09000 * 109.47540 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46788 * 300.00034 * 1 2 3 27 27 H 1.09003 * 109.46788 * 239.99966 * 2 1 3 28 28 H 1.09002 * 109.46831 * 120.00159 * 2 1 3 29 29 H 1.09002 * 109.47092 * 149.69729 * 7 6 4 30 30 H 1.08996 * 109.47197 * 29.69445 * 7 6 4 31 31 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 32 32 H 1.08993 * 109.46955 * 60.00011 * 9 8 7 33 33 H 1.09000 * 109.47050 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47140 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47230 * 299.99295 * 10 8 7 36 36 H 1.09001 * 109.47375 * 60.00133 * 10 8 7 37 37 H 0.96999 * 120.00396 * 180.02562 * 14 13 11 38 38 H 1.09009 * 109.47147 * 175.62437 * 22 21 3 39 39 H 1.09002 * 109.46821 * 295.62009 * 22 21 3 40 40 H 1.08997 * 109.47079 * 55.62410 * 22 21 3 41 41 H 1.08996 * 109.47395 * 304.37753 * 23 21 3 42 42 H 1.09002 * 109.46935 * 64.37856 * 23 21 3 43 43 H 1.09007 * 109.46800 * 184.37450 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2808 2.1409 -1.0787 5 8 2.1404 1.7594 -2.2241 6 7 2.7174 3.3620 -0.7499 7 6 3.0811 4.3956 -1.7223 8 6 4.5683 4.2760 -2.0615 9 6 4.8459 2.8945 -2.6577 10 6 5.3979 4.4585 -0.7890 11 6 4.9423 5.3388 -3.0623 12 1 4.1942 6.0307 -3.4203 13 6 6.2395 5.4280 -3.5209 14 7 7.1506 4.5859 -3.0846 15 14 6.7033 6.7458 -4.7609 16 1 5.5056 7.5604 -5.0888 17 1 7.7547 7.6211 -4.1833 18 1 7.2179 6.1034 -5.9969 19 6 2.7758 3.5258 0.5865 20 8 3.1259 4.5185 1.1881 21 6 2.3118 2.2109 1.1812 22 6 3.4231 1.5781 2.0210 23 6 1.0500 2.4159 2.0220 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.8833 5.3798 -1.2976 30 1 2.4902 4.2656 -2.6289 31 1 4.5754 2.1255 -1.9341 32 1 4.2549 2.7646 -3.5642 33 1 5.9053 2.8095 -2.8997 34 1 6.4573 4.3738 -1.0307 35 1 5.2001 5.4427 -0.3643 36 1 5.1273 3.6895 -0.0654 37 1 8.0633 4.6488 -3.4070 38 1 3.6790 2.2434 2.8458 39 1 3.0793 0.6229 2.4180 40 1 4.3027 1.4171 1.3977 41 1 0.2640 2.8430 1.3993 42 1 0.7182 1.4565 2.4189 43 1 1.2692 3.0941 2.8467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924926394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:31 Heat of formation + Delta-G solvation = -45.859631 kcal Electronic energy + Delta-G solvation = -24508.096997 eV Core-core repulsion = 21168.441164 eV Total energy + Delta-G solvation = -3339.655832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21735 -38.21264 -37.15960 -35.76595 -34.40276 -32.82434 -31.32833 -29.85588 -27.64797 -26.34587 -25.61204 -25.11131 -23.73880 -23.20752 -20.53771 -20.29062 -18.66185 -16.75471 -16.67904 -15.93069 -15.74692 -15.57315 -14.88148 -14.55967 -14.22097 -13.99220 -13.86551 -13.60427 -12.92936 -12.81336 -12.72332 -12.53354 -12.40921 -12.29748 -12.12518 -11.89369 -11.58222 -11.18916 -11.15782 -11.12320 -10.68750 -10.64732 -10.32419 -10.24064 -10.13823 -9.98733 -9.57728 -9.41045 -8.90891 -8.71859 -8.56503 -8.30215 -5.93978 -4.05092 2.06037 2.47720 3.27059 3.31741 3.39831 3.43856 3.53695 4.19603 4.45151 4.53594 4.74228 4.85850 5.13596 5.22235 5.32158 5.33858 5.38524 5.43513 5.52477 5.61795 5.65143 5.78565 5.90428 6.01454 6.07596 6.17460 6.31567 6.35261 6.49871 6.73280 6.89751 7.02840 7.14268 7.18909 7.52089 7.63015 7.72147 7.76777 7.85066 8.14546 8.21066 8.45605 8.58241 8.94703 9.59815 11.07150 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.005434 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.285600 B = 5151.399356 C = 5533.646306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.149 3.851 3 N -0.626 5.626 4 C 0.701 3.299 5 O -0.536 6.536 6 N -0.562 5.562 7 C 0.127 3.873 8 C 0.054 3.946 9 C -0.119 4.119 10 C -0.122 4.122 11 C -0.505 4.505 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.884 5.884 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.529 3.471 20 O -0.467 6.467 21 C 0.114 3.886 22 C -0.144 4.144 23 C -0.142 4.142 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.000 1.000 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.029 0.971 36 H -0.001 1.001 37 H 0.259 0.741 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.179 -9.097 11.041 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.028 3.972 3 N -0.366 5.366 4 C 0.404 3.596 5 O -0.410 6.410 6 N -0.306 5.306 7 C 0.008 3.992 8 C 0.053 3.947 9 C -0.177 4.177 10 C -0.180 4.180 11 C -0.544 4.544 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.722 3.278 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.315 3.685 20 O -0.337 6.337 21 C 0.025 3.975 22 C -0.202 4.202 23 C -0.200 4.200 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.018 0.982 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.889 -8.854 10.628 17.604 hybrid contribution 0.332 0.663 -0.704 1.022 sum -10.557 -8.191 9.924 16.644 Atomic orbital electron populations 1.22294 0.95903 1.02246 1.02778 1.21164 0.93921 0.78749 1.03361 1.47845 1.69931 1.13860 1.04997 1.15896 0.77758 0.80771 0.85165 1.90949 1.57120 1.74278 1.18611 1.46577 1.59771 1.15055 1.09168 1.22228 1.00502 0.87068 0.89404 1.18474 0.87093 0.95055 0.94062 1.21726 1.03457 0.94960 0.97539 1.21769 1.04008 0.96938 0.95281 1.20966 0.94909 1.14497 1.23989 0.92444 1.24876 0.96386 0.95869 0.96322 1.69843 1.02490 1.36354 1.43536 0.86514 0.78459 0.81727 0.81145 1.19784 1.21085 1.21080 1.20567 0.76469 0.88820 0.82673 1.90759 1.44150 1.32461 1.66347 1.21487 0.97890 0.89663 0.88437 1.21934 0.97056 1.01283 0.99896 1.21983 0.95029 1.03229 0.99729 0.92011 0.91399 0.92234 0.89499 0.90102 0.90256 0.90037 0.98075 0.95099 0.90177 0.89938 0.95204 0.98212 0.93120 0.90069 0.90896 0.91199 0.91697 0.90727 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.11 37.16 0.38 -1.15 16 2 C 0.15 1.55 6.57 -4.04 -0.03 1.52 16 3 N -0.63 -8.80 2.47 -165.09 -0.41 -9.20 16 4 C 0.70 13.16 6.75 -88.02 -0.59 12.57 16 5 O -0.54 -11.65 16.03 5.33 0.09 -11.56 16 6 N -0.56 -11.05 2.12 -120.73 -0.26 -11.30 16 7 C 0.13 2.82 4.67 -4.04 -0.02 2.80 16 8 C 0.05 1.36 0.57 -155.66 -0.09 1.27 16 9 C -0.12 -3.06 7.14 37.16 0.27 -2.80 16 10 C -0.12 -3.08 7.26 37.16 0.27 -2.81 16 11 C -0.50 -13.76 8.01 -34.44 -0.28 -14.04 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 14 N -0.88 -24.82 9.35 55.43 0.52 -24.31 16 15 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.53 9.41 5.33 -10.55 -0.06 9.35 16 20 O -0.47 -9.31 16.87 5.59 0.09 -9.22 16 21 C 0.11 1.50 1.14 -132.09 -0.15 1.35 16 22 C -0.14 -1.60 8.75 37.16 0.33 -1.27 16 23 C -0.14 -1.38 7.92 37.16 0.29 -1.09 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.47 6.44 -51.93 -0.33 0.13 16 27 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 28 H 0.08 0.61 7.48 -51.93 -0.39 0.22 16 29 H 0.08 1.72 8.00 -51.93 -0.42 1.31 16 30 H 0.08 1.81 7.85 -51.93 -0.41 1.41 16 31 H 0.00 0.01 6.20 -51.93 -0.32 -0.32 16 32 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 34 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.00 -0.03 6.19 -51.93 -0.32 -0.35 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.54 7.31 -51.93 -0.38 0.16 16 43 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -31.52 335.48 -6.64 -38.15 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.93 Total: -1.36 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 0.23 Total: 7.44 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.15 Total: -44.82 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.52 -6.64 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924926394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.707 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds