Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.45929 * 2 1 4 4 C 1.54483 * 110.62711 * 122.68705 * 2 1 3 5 5 O 1.44691 * 104.83874 * 142.68189 * 4 2 1 6 6 C 1.44426 * 105.13900 * 319.51107 * 5 4 2 7 7 C 1.54485 * 104.89669 * 40.50182 * 6 5 4 8 8 H 1.08996 * 110.51388 * 94.74368 * 7 6 5 9 9 N 1.46498 * 110.50988 * 217.32051 * 7 6 5 10 10 C 1.34777 * 119.99679 * 273.54527 * 9 7 6 11 11 O 1.21586 * 120.00209 * 354.91589 * 10 9 7 12 12 N 1.34781 * 119.99822 * 174.91951 * 10 9 7 13 13 C 1.46923 * 120.63061 * 4.74414 * 12 10 9 14 14 C 1.52765 * 109.00674 * 233.58207 * 13 12 10 15 15 C 1.53033 * 109.38053 * 305.58688 * 14 13 12 16 16 C 1.50708 * 109.45692 * 181.26270 * 15 14 13 17 17 H 1.08000 * 119.99452 * 239.93418 * 16 15 14 18 18 C 1.37874 * 120.00167 * 59.93204 * 16 15 14 19 19 N 1.31511 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99864 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47163 * 60.00089 * 20 18 16 22 22 H 1.48500 * 109.46654 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46856 * 299.99938 * 20 18 16 24 24 C 1.53044 * 109.54077 * 61.24237 * 15 14 13 25 25 C 1.46924 * 120.63109 * 185.01996 * 12 10 9 26 26 H 1.08997 * 109.46864 * 182.60594 * 1 2 3 27 27 H 1.08996 * 109.46895 * 302.60450 * 1 2 3 28 28 H 1.09001 * 109.46762 * 62.60506 * 1 2 3 29 29 H 1.09002 * 110.37369 * 261.50579 * 4 2 1 30 30 H 1.08996 * 110.37511 * 23.73763 * 4 2 1 31 31 H 1.08991 * 110.37320 * 281.61618 * 6 5 4 32 32 H 1.08996 * 110.37279 * 159.37923 * 6 5 4 33 33 H 0.96993 * 120.00520 * 93.54797 * 9 7 6 34 34 H 1.08997 * 109.58879 * 353.41633 * 13 12 10 35 35 H 1.08999 * 109.58580 * 113.83968 * 13 12 10 36 36 H 1.08996 * 109.56176 * 185.55172 * 14 13 12 37 37 H 1.08996 * 109.38509 * 65.51516 * 14 13 12 38 38 H 1.08997 * 109.46642 * 301.21885 * 15 14 13 39 39 H 0.96999 * 120.00257 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.49835 * 178.68026 * 24 15 14 41 41 H 1.08997 * 109.52106 * 58.59613 * 24 15 14 42 42 H 1.09002 * 109.59106 * 246.16138 * 25 12 10 43 43 H 1.09005 * 109.58779 * 6.43873 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 1.2168 5 8 3.2458 -1.4701 0.7210 6 6 2.8786 -1.9395 -0.5946 7 6 2.0714 -0.7798 -1.2191 8 1 2.7195 -0.1455 -1.8237 9 7 0.9661 -1.3007 -2.0273 10 6 1.1715 -1.6285 -3.3184 11 8 2.2479 -1.4062 -3.8382 12 7 0.1837 -2.2028 -4.0332 13 6 -1.1535 -2.3832 -3.4518 14 6 -1.5588 -3.8503 -3.5822 15 6 -1.4466 -4.2800 -5.0466 16 6 -1.8758 -5.7183 -5.1821 17 1 -1.1835 -6.4547 -5.5627 18 6 -3.1520 -6.0939 -4.8203 19 7 -3.9948 -5.1972 -4.3564 20 14 -3.6837 -7.8769 -4.9876 21 1 -2.8065 -8.7355 -4.1519 22 1 -5.0908 -8.0184 -4.5346 23 1 -3.5762 -8.2942 -6.4087 24 6 0.0037 -4.1345 -5.5131 25 6 0.4252 -2.6656 -5.4065 26 1 -0.3633 -1.0266 0.0467 27 1 -0.3633 0.5537 0.8657 28 1 -0.3633 0.4729 -0.9124 29 1 2.3492 -0.0933 2.0168 30 1 1.3326 -1.4967 1.5709 31 1 2.2610 -2.8344 -0.5195 32 1 3.7704 -2.1433 -1.1873 33 1 0.0865 -1.4096 -1.6334 34 1 -1.1349 -2.1029 -2.3986 35 1 -1.8711 -1.7599 -3.9853 36 1 -2.5873 -3.9763 -3.2438 37 1 -0.8971 -4.4642 -2.9712 38 1 -2.0903 -3.6499 -5.6604 39 1 -4.8928 -5.4614 -4.1021 40 1 0.0874 -4.4628 -6.5491 41 1 0.6515 -4.7454 -4.8844 42 1 -0.1610 -2.0658 -6.1028 43 1 1.4848 -2.5692 -5.6437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926007831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = -72.179051 kcal Electronic energy + Delta-G solvation = -23384.060189 eV Core-core repulsion = 20043.263061 eV Total energy + Delta-G solvation = -3340.797128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55556 -39.20449 -36.90548 -35.01228 -33.53747 -32.46731 -31.10826 -30.10421 -28.64325 -26.56413 -26.08987 -23.39901 -22.76079 -22.28529 -20.72860 -19.77023 -19.08434 -17.81092 -16.55830 -16.39822 -16.14682 -15.57269 -15.27155 -14.93351 -14.56048 -14.34125 -13.97966 -13.55345 -13.17549 -12.99196 -12.80533 -12.58925 -12.56039 -12.44472 -12.09536 -11.61173 -11.40051 -11.30771 -11.17673 -10.95000 -10.88370 -10.68844 -10.41284 -10.19085 -9.99832 -9.79608 -9.58488 -9.20368 -9.01601 -8.94191 -8.40558 -7.94556 -6.06335 -4.12360 2.90740 3.27783 3.32472 3.35765 3.48532 3.85052 4.19251 4.26332 4.38422 4.49474 4.70911 4.95768 5.11983 5.14362 5.22944 5.30869 5.40919 5.49388 5.54376 5.70023 5.74723 5.80197 5.82733 5.89683 5.93822 6.03809 6.15120 6.23859 6.43119 6.44326 6.64582 6.73525 6.83037 6.96344 7.09821 7.18302 7.40743 7.63418 7.88712 7.99699 8.25748 8.37246 8.89185 8.90939 9.52926 10.99156 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.004182 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.301047 B = 6693.469995 C = 7122.478172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 H 0.093 0.907 4 C 0.047 3.953 5 O -0.374 6.374 6 C 0.033 3.967 7 C 0.137 3.863 8 H 0.102 0.898 9 N -0.744 5.744 10 C 0.705 3.295 11 O -0.604 6.604 12 N -0.617 5.617 13 C 0.111 3.889 14 C -0.124 4.124 15 C 0.050 3.950 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.124 4.124 25 C 0.130 3.870 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.400 0.600 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 10.369 9.152 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 H 0.111 0.889 4 C -0.030 4.030 5 O -0.292 6.292 6 C -0.046 4.046 7 C 0.030 3.970 8 H 0.120 0.880 9 N -0.406 5.406 10 C 0.406 3.594 11 O -0.484 6.484 12 N -0.353 5.353 13 C -0.012 4.012 14 C -0.163 4.163 15 C 0.031 3.969 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.163 4.163 25 C 0.007 3.993 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.241 0.759 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.216 10.493 8.941 15.560 hybrid contribution -1.105 -1.081 0.075 1.547 sum 6.111 9.412 9.016 14.395 Atomic orbital electron populations 1.21791 0.93818 1.02312 1.02917 1.22764 0.97185 1.00696 0.94654 0.88850 1.23562 0.88227 0.95097 0.96085 1.89200 1.34805 1.74026 1.31122 1.23949 1.00462 0.96685 0.83465 1.22063 0.88481 0.94851 0.91627 0.88022 1.45535 1.13641 1.71065 1.10359 1.15891 0.84049 0.78423 0.80989 1.90852 1.25414 1.61419 1.70678 1.47422 1.10675 1.61688 1.15561 1.21807 0.82605 1.00944 0.95827 1.21949 1.03387 0.90104 1.00864 1.18612 0.89813 0.96583 0.91876 1.21183 0.97446 0.93877 1.42527 0.92735 1.24947 0.96586 0.97262 0.95091 1.69817 1.06155 1.33201 1.44019 0.86677 0.77512 0.85382 0.78554 1.20351 1.21312 1.20276 1.22028 1.00260 0.93128 1.00845 1.21580 1.01270 0.96047 0.80391 0.92043 0.91562 0.91410 0.88944 0.91893 0.91698 0.88357 0.75931 0.92815 0.91913 0.87775 0.94309 0.95423 0.92935 0.92070 0.92995 0.92439 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.80 37.16 0.29 -0.92 16 2 C -0.13 -1.22 3.71 -89.05 -0.33 -1.55 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.05 0.44 7.19 37.94 0.27 0.71 16 5 O -0.37 -4.68 11.67 -35.23 -0.41 -5.09 16 6 C 0.03 0.42 7.34 37.94 0.28 0.70 16 7 C 0.14 1.67 3.44 -66.36 -0.23 1.44 16 8 H 0.10 1.38 7.60 -51.93 -0.39 0.98 16 9 N -0.74 -10.25 4.56 -57.14 -0.26 -10.51 16 10 C 0.70 12.42 8.29 -86.91 -0.72 11.70 16 11 O -0.60 -12.35 15.46 5.29 0.08 -12.26 16 12 N -0.62 -11.02 2.98 -178.76 -0.53 -11.55 16 13 C 0.11 1.91 6.40 -3.93 -0.03 1.88 16 14 C -0.12 -2.66 5.14 -26.83 -0.14 -2.80 16 15 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 16 C -0.51 -13.45 8.56 -34.44 -0.29 -13.75 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.01 11.30 55.43 0.63 -23.38 16 20 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 25 C 0.13 2.37 6.42 -3.71 -0.02 2.35 16 26 H 0.06 0.51 6.98 -51.93 -0.36 0.15 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.58 7.74 -51.93 -0.40 0.18 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 7.83 -51.93 -0.41 0.14 16 31 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.40 4.90 3.27 -40.82 -0.13 4.77 16 34 H 0.05 0.77 5.57 -51.93 -0.29 0.48 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.45 7.03 -51.93 -0.37 1.09 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -29.40 331.38 -8.72 -38.12 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.85 Total: 4.47 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.35 Total: -0.37 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.17 Total: -45.45 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.33 Total: -17.35 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.40 -8.72 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926007831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.058 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds