Wall clock time and date at job start Tue Mar 31 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.56494 * 2 1 4 4 C 1.54484 * 110.51066 * 122.67355 * 2 1 3 5 5 O 1.44422 * 104.80681 * 142.62573 * 4 2 1 6 6 C 1.44792 * 105.29216 * 319.45499 * 5 4 2 7 7 C 1.54479 * 104.62830 * 40.53351 * 6 5 4 8 8 H 1.09002 * 110.51176 * 217.27476 * 7 6 5 9 9 N 1.46504 * 110.51224 * 94.70514 * 7 6 5 10 10 C 1.34768 * 120.00355 * 88.02558 * 9 7 6 11 11 O 1.21587 * 119.99731 * 355.29211 * 10 9 7 12 12 N 1.34776 * 120.00394 * 175.29057 * 10 9 7 13 13 C 1.46926 * 120.62780 * 4.94417 * 12 10 9 14 14 C 1.53627 * 108.54334 * 126.36794 * 13 12 10 15 15 C 1.53039 * 109.24113 * 54.85618 * 14 13 12 16 16 C 1.50701 * 109.46141 * 178.48680 * 15 14 13 17 17 H 1.08002 * 119.99355 * 120.06435 * 16 15 14 18 18 C 1.37875 * 120.00380 * 300.07275 * 16 15 14 19 19 N 1.31515 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00140 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47256 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47463 * 119.99815 * 20 18 16 23 23 H 1.48501 * 109.47160 * 239.99864 * 20 18 16 24 24 C 1.53034 * 109.53954 * 298.51423 * 15 14 13 25 25 C 1.46920 * 120.63386 * 185.22424 * 12 10 9 26 26 H 1.09007 * 109.47124 * 182.68114 * 1 2 3 27 27 H 1.08999 * 109.47504 * 302.68489 * 1 2 3 28 28 H 1.08995 * 109.46927 * 62.68469 * 1 2 3 29 29 H 1.09000 * 110.37012 * 261.46098 * 4 2 1 30 30 H 1.09004 * 110.37238 * 23.68015 * 4 2 1 31 31 H 1.08993 * 110.42516 * 281.77343 * 6 5 4 32 32 H 1.08997 * 110.48472 * 159.32150 * 6 5 4 33 33 H 0.97009 * 119.99705 * 268.30584 * 9 7 6 34 34 H 1.09003 * 109.58757 * 246.19984 * 13 12 10 35 35 H 1.08999 * 109.59120 * 6.62576 * 13 12 10 36 36 H 1.08998 * 109.63485 * 294.86744 * 14 13 12 37 37 H 1.09004 * 109.45786 * 174.74112 * 14 13 12 38 38 H 1.09003 * 109.45916 * 58.53391 * 15 14 13 39 39 H 0.97004 * 120.00217 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.49393 * 301.41000 * 24 15 14 41 41 H 1.09000 * 109.50010 * 181.31600 * 24 15 14 42 42 H 1.08997 * 109.58985 * 353.37327 * 25 12 10 43 43 H 1.09004 * 109.59030 * 113.79889 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0205 0.0000 4 6 2.0713 -0.7811 1.2180 5 8 3.2398 -1.4713 0.7241 6 6 2.8750 -1.9444 -0.5948 7 6 2.0714 -0.7815 -1.2179 8 1 1.2491 -1.1657 -1.8214 9 7 2.9458 0.0710 -2.0274 10 6 3.1536 -0.2182 -3.3272 11 8 2.6853 -1.2327 -3.8066 12 7 3.8803 0.6171 -4.0956 13 6 4.5425 1.7895 -3.5077 14 6 6.0316 1.7491 -3.8833 15 6 6.1655 1.6491 -5.4046 16 6 7.6247 1.6465 -5.7811 17 1 8.0432 0.8058 -6.3144 18 6 8.4254 2.7173 -5.4446 19 7 7.9156 3.7411 -4.7954 20 14 10.2343 2.7137 -5.9107 21 1 10.5576 1.4554 -6.6299 22 1 10.5211 3.8751 -6.7906 23 1 11.0623 2.8075 -4.6816 24 6 5.5108 0.3546 -5.8920 25 6 4.0205 0.3760 -5.5381 26 1 -0.3634 -1.0266 0.0481 27 1 -0.3634 0.5549 0.8649 28 1 -0.3633 0.4716 -0.9130 29 1 2.3463 -0.0937 2.0179 30 1 1.3277 -1.4955 1.5716 31 1 2.2546 -2.8374 -0.5205 32 1 3.7670 -2.1492 -1.1868 33 1 3.3784 0.8413 -1.6267 34 1 4.0887 2.7000 -3.8991 35 1 4.4370 1.7633 -2.4232 36 1 6.5031 0.8830 -3.4189 37 1 6.5190 2.6595 -3.5343 38 1 5.6723 2.5028 -5.8694 39 1 8.4789 4.4947 -4.5590 40 1 5.9872 -0.4984 -5.4087 41 1 5.6270 0.2726 -6.9727 42 1 3.5704 -0.5832 -5.7938 43 1 3.5249 1.1736 -6.0918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926007832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:18 Heat of formation + Delta-G solvation = -79.438556 kcal Electronic energy + Delta-G solvation = -23164.082015 eV Core-core repulsion = 19822.970091 eV Total energy + Delta-G solvation = -3341.111924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44282 -39.18820 -36.84029 -34.61773 -33.54661 -32.88555 -31.11514 -30.01238 -28.55631 -26.47824 -25.97863 -23.47929 -22.60562 -22.17689 -20.79992 -20.08380 -18.80053 -17.72310 -16.80819 -16.25790 -16.00221 -15.85396 -15.20990 -14.83365 -14.56469 -14.17663 -13.71824 -13.44308 -13.24378 -13.05681 -12.85073 -12.63341 -12.60834 -12.31334 -11.87464 -11.60352 -11.44585 -11.35006 -11.19183 -11.06296 -10.96318 -10.61022 -10.37780 -10.16175 -10.07222 -9.76594 -9.55752 -9.15546 -8.96967 -8.87573 -8.38276 -7.90353 -6.03740 -4.09526 2.96144 3.27221 3.35798 3.40141 3.48729 3.82905 4.17319 4.26538 4.41022 4.55566 4.73585 4.89500 5.13268 5.16652 5.25840 5.31974 5.42917 5.47182 5.56159 5.60108 5.74946 5.78706 5.83266 5.89070 5.94490 6.06916 6.17603 6.26133 6.46718 6.55631 6.68231 6.69281 6.87006 6.99924 7.15030 7.22297 7.44406 7.67093 7.92136 8.03090 8.28928 8.40406 8.91464 8.94247 9.55734 11.01784 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.003897 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.698835 B = 7183.930312 C = 7590.143470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.048 3.952 5 O -0.374 6.374 6 C 0.033 3.967 7 C 0.138 3.862 8 H 0.102 0.898 9 N -0.741 5.741 10 C 0.706 3.294 11 O -0.605 6.605 12 N -0.617 5.617 13 C 0.110 3.890 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.510 4.510 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.124 4.124 25 C 0.129 3.871 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.398 0.602 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.027 0.973 39 H 0.259 0.741 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.715 -4.693 10.237 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 H 0.109 0.891 4 C -0.029 4.029 5 O -0.292 6.292 6 C -0.045 4.045 7 C 0.031 3.969 8 H 0.120 0.880 9 N -0.399 5.399 10 C 0.407 3.593 11 O -0.486 6.486 12 N -0.353 5.353 13 C -0.013 4.013 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.162 4.162 25 C 0.007 3.993 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.236 0.764 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.121 0.879 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.799 -5.266 10.038 17.858 hybrid contribution 1.145 0.579 -0.065 1.284 sum -12.655 -4.687 9.973 16.780 Atomic orbital electron populations 1.21769 0.93199 1.02371 1.02514 1.22841 0.97225 1.00878 0.94472 0.89129 1.23509 0.88311 0.95033 0.96080 1.89229 1.34878 1.73749 1.31389 1.24016 1.00731 0.96094 0.83632 1.22144 0.92789 0.90437 0.91508 0.88025 1.45351 1.52569 1.32684 1.09342 1.15863 0.79443 0.83104 0.80864 1.90848 1.57233 1.26968 1.73504 1.47420 1.51766 1.27165 1.08968 1.21992 0.96574 0.86928 0.95792 1.22089 0.90466 1.03293 1.00282 1.18626 0.95281 0.91633 0.91422 1.21260 0.94163 1.03522 1.35911 0.92638 1.24957 0.98461 0.95480 0.95091 1.69845 1.35583 1.07566 1.40174 0.86561 0.85410 0.77968 0.78218 1.19825 1.21059 1.21078 1.22022 0.92872 1.01102 1.00243 1.21578 0.98370 1.01136 0.78248 0.92122 0.91960 0.91892 0.88979 0.91999 0.91479 0.88371 0.76442 0.91988 0.92541 0.94232 0.87860 0.95470 0.93070 0.92952 0.92152 0.90260 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.97 37.16 0.33 -0.67 16 2 C -0.13 -1.20 3.48 -89.05 -0.31 -1.51 16 3 H 0.09 0.79 7.68 -51.93 -0.40 0.39 16 4 C 0.05 0.43 7.19 37.94 0.27 0.70 16 5 O -0.37 -4.78 11.66 -35.23 -0.41 -5.19 16 6 C 0.03 0.42 7.38 37.93 0.28 0.70 16 7 C 0.14 1.65 3.04 -66.36 -0.20 1.45 16 8 H 0.10 1.29 7.28 -51.93 -0.38 0.91 16 9 N -0.74 -10.50 5.01 -57.14 -0.29 -10.79 16 10 C 0.71 12.61 8.29 -86.93 -0.72 11.89 16 11 O -0.61 -12.42 15.49 5.29 0.08 -12.34 16 12 N -0.62 -11.22 2.97 -178.24 -0.53 -11.75 16 13 C 0.11 1.94 6.42 -3.48 -0.02 1.92 16 14 C -0.12 -2.70 5.17 -26.39 -0.14 -2.84 16 15 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 16 C -0.51 -13.62 8.56 -34.44 -0.29 -13.92 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 20 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 25 C 0.13 2.40 6.44 -3.71 -0.02 2.37 16 26 H 0.06 0.40 8.09 -51.92 -0.42 -0.02 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.47 7.83 -51.93 -0.41 0.06 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.43 8.06 -51.93 -0.42 1.02 16 33 H 0.40 5.15 5.83 -40.82 -0.24 4.91 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.85 5.64 -51.93 -0.29 0.56 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -30.03 335.79 -8.72 -38.75 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.00 Total: 4.23 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.25 Total: -0.11 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.19 Total: -46.29 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.33 Total: -17.53 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.03 -8.72 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926007832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.686 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds