Wall clock time and date at job start Tue Mar 31 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.56926 * 2 1 4 4 C 1.54483 * 110.51436 * 237.31856 * 2 1 3 5 5 O 1.44420 * 104.80406 * 217.38314 * 4 2 1 6 6 C 1.44421 * 105.28004 * 40.50777 * 5 4 2 7 7 C 1.54478 * 104.80248 * 319.48950 * 6 5 4 8 8 H 1.09001 * 110.51346 * 265.32870 * 7 6 5 9 9 N 1.46503 * 110.50914 * 142.62017 * 7 6 5 10 10 C 1.34774 * 120.00041 * 86.45863 * 9 7 6 11 11 O 1.21591 * 119.99808 * 355.01101 * 10 9 7 12 12 N 1.34776 * 120.00472 * 175.01808 * 10 9 7 13 13 C 1.46925 * 120.63352 * 184.94668 * 12 10 9 14 14 C 1.52758 * 109.00539 * 233.58289 * 13 12 10 15 15 C 1.53040 * 109.38441 * 305.58310 * 14 13 12 16 16 C 1.50703 * 109.44994 * 181.25458 * 15 14 13 17 17 H 1.08004 * 120.00009 * 239.94388 * 16 15 14 18 18 C 1.37881 * 119.99913 * 59.94164 * 16 15 14 19 19 N 1.31511 * 119.99498 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47056 * 90.00408 * 20 18 16 22 22 H 1.48503 * 109.46767 * 210.00161 * 20 18 16 23 23 H 1.48495 * 109.47329 * 329.99962 * 20 18 16 24 24 C 1.53043 * 109.53630 * 61.24600 * 15 14 13 25 25 C 1.46932 * 120.62512 * 5.22447 * 12 10 9 26 26 H 1.08998 * 109.47527 * 297.32659 * 1 2 3 27 27 H 1.09003 * 109.46699 * 57.32127 * 1 2 3 28 28 H 1.08997 * 109.47444 * 177.32070 * 1 2 3 29 29 H 1.08994 * 110.36804 * 98.54808 * 4 2 1 30 30 H 1.09004 * 110.46140 * 336.25907 * 4 2 1 31 31 H 1.08997 * 110.37286 * 200.65940 * 6 5 4 32 32 H 1.09001 * 110.46366 * 78.36936 * 6 5 4 33 33 H 0.96998 * 120.00103 * 266.44960 * 9 7 6 34 34 H 1.08997 * 109.58419 * 353.41419 * 13 12 10 35 35 H 1.08996 * 109.58701 * 113.84259 * 13 12 10 36 36 H 1.09003 * 109.56230 * 185.55374 * 14 13 12 37 37 H 1.08997 * 109.39074 * 65.51947 * 14 13 12 38 38 H 1.08990 * 109.46162 * 301.22231 * 15 14 13 39 39 H 0.97004 * 119.99351 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.49864 * 178.68226 * 24 15 14 41 41 H 1.09005 * 109.52507 * 58.59635 * 24 15 14 42 42 H 1.09004 * 109.58011 * 246.15475 * 25 12 10 43 43 H 1.08998 * 109.58783 * 6.43700 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7813 -1.2178 5 8 3.2397 -1.4715 -0.7237 6 6 2.8756 -1.9422 0.5922 7 6 2.0713 -0.7814 1.2181 8 1 2.7219 -0.1471 1.8204 9 7 0.9660 -1.3005 2.0274 10 6 1.1722 -1.6292 3.3181 11 8 2.2935 -1.5813 3.7859 12 7 0.1357 -2.0112 4.0902 13 6 0.3253 -2.2682 5.5243 14 6 -0.2041 -3.6627 5.8541 15 6 -1.6547 -3.7804 5.3805 16 6 -2.1883 -5.1451 5.7326 17 1 -2.5358 -5.8067 4.9529 18 6 -2.2329 -5.5490 7.0502 19 7 -1.8101 -4.7431 7.9995 20 14 -2.8937 -7.2408 7.4865 21 1 -1.7803 -8.2234 7.4820 22 1 -3.5108 -7.1981 8.8366 23 1 -3.9154 -7.6459 6.4879 24 6 -1.7153 -3.5851 3.8638 25 6 -1.2041 -2.1843 3.5125 26 1 -0.3634 0.4717 0.9129 27 1 -0.3633 0.5549 -0.8650 28 1 -0.3634 -1.0265 -0.0480 29 1 2.3465 -0.0939 -2.0177 30 1 1.3293 -1.4969 -1.5719 31 1 3.7687 -2.1467 1.1826 32 1 2.2568 -2.8366 0.5192 33 1 0.0857 -1.4075 1.6344 34 1 1.3863 -2.2147 5.7680 35 1 -0.2229 -1.5258 6.1042 36 1 -0.1588 -3.8251 6.9310 37 1 0.4059 -4.4105 5.3474 38 1 -2.2594 -3.0168 5.8694 39 1 -1.8412 -5.0274 8.9264 40 1 -2.7454 -3.6923 3.5240 41 1 -1.0912 -4.3332 3.3749 42 1 -1.8795 -1.4348 3.9251 43 1 -1.1523 -2.0729 2.4295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926007833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:20 Heat of formation + Delta-G solvation = -71.645675 kcal Electronic energy + Delta-G solvation = -23281.772056 eV Core-core repulsion = 19940.998056 eV Total energy + Delta-G solvation = -3340.773999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58731 -39.23163 -36.90493 -35.04706 -33.56340 -32.43122 -31.06823 -30.23275 -28.59282 -26.61446 -26.08886 -23.37320 -22.88685 -22.23056 -20.73026 -19.81478 -19.09798 -17.81017 -16.64075 -16.31885 -16.24089 -15.63825 -15.29577 -14.79710 -14.58025 -14.39409 -13.97406 -13.59006 -13.25951 -12.93199 -12.87150 -12.67753 -12.58612 -12.37889 -12.01966 -11.87000 -11.38275 -11.28644 -11.10180 -10.95610 -10.91741 -10.67631 -10.45189 -10.07678 -10.02916 -9.80967 -9.57772 -9.21630 -9.02618 -8.91619 -8.38155 -7.93367 -6.03046 -4.09848 2.89328 3.28164 3.35388 3.37585 3.47545 3.81844 4.16282 4.22572 4.40279 4.44658 4.66688 4.91165 5.06908 5.08923 5.24836 5.26855 5.31677 5.35382 5.49542 5.68001 5.71386 5.71823 5.77992 5.81067 5.87440 6.03132 6.24355 6.38743 6.40628 6.49279 6.58725 6.71387 6.78141 6.95237 7.11152 7.22192 7.46180 7.69654 7.91668 8.04764 8.25562 8.38923 8.89523 8.93352 9.55352 11.02356 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031943 B = 0.003715 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.348202 B = 7534.577558 C = 7669.704988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 H 0.094 0.906 4 C 0.048 3.952 5 O -0.374 6.374 6 C 0.034 3.966 7 C 0.138 3.862 8 H 0.100 0.900 9 N -0.746 5.746 10 C 0.703 3.297 11 O -0.598 6.598 12 N -0.617 5.617 13 C 0.126 3.874 14 C -0.124 4.124 15 C 0.050 3.950 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.113 3.887 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.398 0.602 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.037 0.963 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 9.915 -15.395 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 H 0.112 0.888 4 C -0.029 4.029 5 O -0.292 6.292 6 C -0.044 4.044 7 C 0.031 3.969 8 H 0.118 0.882 9 N -0.408 5.408 10 C 0.405 3.595 11 O -0.477 6.477 12 N -0.353 5.353 13 C 0.004 3.996 14 C -0.163 4.163 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.162 4.162 25 C -0.010 4.010 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.238 0.762 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.998 9.939 -14.936 18.381 hybrid contribution -1.058 -1.037 0.210 1.496 sum 2.941 8.902 -14.726 17.457 Atomic orbital electron populations 1.21784 0.93899 1.02146 1.02930 1.22782 0.97146 1.00759 0.94696 0.88795 1.23515 0.88301 0.95027 0.96087 1.89148 1.34908 1.73866 1.31257 1.23948 1.00642 0.96562 0.83281 1.22049 0.88408 0.94808 0.91610 0.88181 1.45550 1.13449 1.71283 1.10486 1.15914 0.84690 0.78133 0.80772 1.90870 1.21913 1.61374 1.73588 1.47457 1.07642 1.70083 1.10124 1.21692 1.01431 0.99292 0.77135 1.21951 0.97907 0.91775 1.04642 1.18619 0.92772 0.97115 0.88360 1.21181 1.41341 1.00535 0.92201 0.92769 1.24960 0.95289 0.97127 0.96551 1.69844 1.47071 1.35794 1.00135 0.86618 0.79142 0.84672 0.77702 1.20724 1.21243 1.19998 1.22017 0.99598 0.93348 1.01263 1.21714 0.83677 0.99691 0.95911 0.91387 0.91581 0.92182 0.88952 0.92031 0.88186 0.91802 0.76193 0.90489 0.92536 0.87800 0.94367 0.95451 0.92933 0.92122 0.92901 0.91848 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.79 37.15 0.29 -0.77 16 2 C -0.13 -1.14 3.72 -89.05 -0.33 -1.47 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.05 0.41 7.18 37.94 0.27 0.68 16 5 O -0.37 -4.51 11.65 -35.23 -0.41 -4.92 16 6 C 0.03 0.42 7.35 37.93 0.28 0.70 16 7 C 0.14 1.63 3.36 -66.36 -0.22 1.41 16 8 H 0.10 1.32 7.75 -51.93 -0.40 0.92 16 9 N -0.75 -9.80 4.55 -57.14 -0.26 -10.06 16 10 C 0.70 12.37 8.29 -86.92 -0.72 11.65 16 11 O -0.60 -12.53 15.53 5.29 0.08 -12.45 16 12 N -0.62 -11.00 2.98 -178.76 -0.53 -11.54 16 13 C 0.13 2.53 6.41 -3.93 -0.03 2.50 16 14 C -0.12 -2.86 5.14 -26.83 -0.14 -3.00 16 15 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 16 C -0.51 -13.58 8.56 -34.44 -0.29 -13.87 16 17 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.60 11.31 55.43 0.63 -23.98 16 20 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 25 C 0.11 1.76 6.39 -3.71 -0.02 1.74 16 26 H 0.07 0.52 7.73 -51.93 -0.40 0.12 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 6.99 -51.93 -0.36 0.06 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.49 7.83 -51.93 -0.41 0.08 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.40 4.42 3.30 -40.82 -0.13 4.28 16 34 H 0.08 1.59 6.99 -51.93 -0.36 1.22 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 2.67 6.03 -51.93 -0.31 2.36 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.69 5.64 -51.93 -0.29 0.39 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -30.20 331.53 -8.72 -38.93 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.87 Total: 3.56 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.34 Total: -0.36 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.17 Total: -45.57 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.33 Total: -17.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.20 -8.72 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926007833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.717 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds