Wall clock time and date at job start Tue Mar 31 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.54088 * 2 1 4 4 C 1.54101 * 110.48712 * 237.38244 * 2 1 3 5 5 O 1.43745 * 107.29337 * 243.35115 * 4 2 1 6 6 C 1.44379 * 106.97575 * 333.48809 * 5 4 2 7 7 C 1.54812 * 110.48784 * 122.61874 * 2 1 3 8 8 H 1.08997 * 110.93735 * 21.33977 * 7 2 1 9 9 N 1.46504 * 110.90475 * 257.75510 * 7 2 1 10 10 C 1.34774 * 120.00012 * 160.83877 * 9 7 2 11 11 O 1.21585 * 119.99916 * 5.07675 * 10 9 7 12 12 N 1.34778 * 120.00098 * 185.06688 * 10 9 7 13 13 C 1.46924 * 120.63012 * 174.96559 * 12 10 9 14 14 C 1.53196 * 108.77633 * 233.63433 * 13 12 10 15 15 C 1.53038 * 109.31591 * 305.36754 * 14 13 12 16 16 C 1.50698 * 109.46109 * 181.38235 * 15 14 13 17 17 H 1.07993 * 120.00187 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99630 * 180.27495 * 16 15 14 19 19 N 1.31516 * 120.00419 * 359.72630 * 18 16 15 20 20 Si 1.86800 * 119.99691 * 179.72626 * 18 16 15 21 21 H 1.48502 * 109.47357 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47177 * 119.99916 * 20 18 16 23 23 H 1.48498 * 109.47233 * 239.99583 * 20 18 16 24 24 C 1.53045 * 109.53505 * 61.36413 * 15 14 13 25 25 C 1.46929 * 120.63296 * 354.99795 * 12 10 9 26 26 H 1.08994 * 109.47273 * 297.38119 * 1 2 3 27 27 H 1.09000 * 109.47096 * 57.38543 * 1 2 3 28 28 H 1.09002 * 109.46935 * 177.38421 * 1 2 3 29 29 H 1.09001 * 109.87634 * 123.92917 * 4 2 1 30 30 H 1.08993 * 110.00408 * 2.84774 * 4 2 1 31 31 H 1.08994 * 110.61898 * 281.55450 * 6 5 4 32 32 H 1.09004 * 110.74996 * 158.62602 * 6 5 4 33 33 H 0.96996 * 120.00082 * 340.83840 * 9 7 2 34 34 H 1.08996 * 109.58592 * 113.85212 * 13 12 10 35 35 H 1.08996 * 109.59113 * 353.42257 * 13 12 10 36 36 H 1.09001 * 109.49875 * 185.41233 * 14 13 12 37 37 H 1.09004 * 109.52373 * 65.33464 * 14 13 12 38 38 H 1.09004 * 109.46062 * 301.35962 * 15 14 13 39 39 H 0.96997 * 120.00255 * 180.02562 * 19 18 16 40 40 H 1.08989 * 109.49957 * 58.58852 * 24 15 14 41 41 H 1.09008 * 109.49510 * 178.68827 * 24 15 14 42 42 H 1.09000 * 109.58538 * 246.15611 * 25 12 10 43 43 H 1.09003 * 109.58179 * 6.57091 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0693 -0.7781 -1.2159 5 8 2.7955 -1.9109 -0.7103 6 6 3.2660 -1.5561 0.6077 7 6 2.0718 -0.7817 1.2215 8 1 1.3199 -1.4693 1.6086 9 7 2.5267 0.1356 2.2693 10 6 2.6676 -0.3043 3.5354 11 8 2.5068 -1.4820 3.7912 12 7 2.9869 0.5613 4.5180 13 6 3.0362 0.1192 5.9182 14 6 2.1439 1.0392 6.7575 15 6 2.5709 2.4929 6.5420 16 6 1.7173 3.3982 7.3921 17 1 0.9478 2.9789 8.0232 18 6 1.9155 4.7623 7.3603 19 7 2.8529 5.2730 6.5922 20 14 0.8524 5.8851 8.4084 21 1 -0.1213 5.0691 9.1774 22 1 1.7134 6.6450 9.3500 23 1 0.1203 6.8340 7.5316 24 6 2.3964 2.8643 5.0675 25 6 3.2916 1.9651 4.2092 26 1 -0.3633 0.4726 0.9125 27 1 -0.3633 0.5539 -0.8656 28 1 -0.3633 -1.0266 -0.0469 29 1 2.7350 -0.1409 -1.7981 30 1 1.2416 -1.1165 -1.8390 31 1 4.1456 -0.9158 0.5418 32 1 3.4858 -2.4491 1.1928 33 1 2.7265 1.0595 2.0518 34 1 4.0620 0.1734 6.2826 35 1 2.6742 -0.9064 5.9907 36 1 2.2462 0.7824 7.8119 37 1 1.1047 0.9162 6.4524 38 1 3.6172 2.6097 6.8243 39 1 2.9925 6.2326 6.5701 40 1 1.3551 2.7240 4.7778 41 1 2.6786 3.9067 4.9191 42 1 4.3383 2.1697 4.4341 43 1 3.0982 2.1573 3.1539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926007834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:22 Heat of formation + Delta-G solvation = -79.986934 kcal Electronic energy + Delta-G solvation = -23131.450127 eV Core-core repulsion = 19790.314424 eV Total energy + Delta-G solvation = -3341.135703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44481 -39.26829 -36.90733 -34.77470 -33.56509 -32.82620 -31.15432 -30.07841 -28.59594 -26.50171 -26.04409 -23.39360 -22.59065 -22.13780 -20.93215 -20.20804 -18.84978 -17.74141 -16.90753 -16.36935 -16.06811 -15.39620 -15.33443 -14.82286 -14.58860 -14.16270 -13.90361 -13.73036 -13.20014 -12.94586 -12.86583 -12.61834 -12.54211 -12.39222 -12.26685 -11.61785 -11.44674 -11.36059 -11.15404 -10.99312 -10.94379 -10.63694 -10.41097 -10.20421 -9.92354 -9.81508 -9.59623 -9.20515 -9.00055 -8.94049 -8.41586 -7.94576 -6.07039 -4.12947 2.85817 3.24348 3.33174 3.37360 3.46911 3.81589 4.15061 4.25502 4.37888 4.55330 4.65080 4.90818 5.07925 5.16377 5.22418 5.39498 5.48667 5.50657 5.60931 5.64584 5.73121 5.77017 5.83796 5.91614 5.98608 6.04537 6.14879 6.22621 6.43695 6.46909 6.64278 6.73352 6.82619 6.95962 7.09603 7.17945 7.39747 7.63454 7.88348 7.99530 8.24563 8.36843 8.87643 8.90889 9.52439 10.98408 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026484 B = 0.003864 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.977416 B = 7245.121674 C = 7767.619141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 H 0.089 0.911 4 C 0.052 3.948 5 O -0.376 6.376 6 C 0.036 3.964 7 C 0.140 3.860 8 H 0.103 0.897 9 N -0.741 5.741 10 C 0.706 3.294 11 O -0.602 6.602 12 N -0.617 5.617 13 C 0.130 3.870 14 C -0.124 4.124 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.124 4.124 25 C 0.110 3.890 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.398 0.602 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.038 0.962 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -7.328 -13.438 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 H 0.107 0.893 4 C -0.025 4.025 5 O -0.294 6.294 6 C -0.043 4.043 7 C 0.033 3.967 8 H 0.121 0.879 9 N -0.400 5.400 10 C 0.408 3.592 11 O -0.482 6.482 12 N -0.353 5.353 13 C 0.007 3.993 14 C -0.163 4.163 15 C 0.030 3.970 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.162 4.162 25 C -0.012 4.012 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.235 0.765 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.353 -8.204 -13.388 15.705 hybrid contribution -0.459 1.589 0.517 1.733 sum -0.812 -6.614 -12.871 14.494 Atomic orbital electron populations 1.21810 0.93138 1.02492 1.02536 1.22772 0.97840 1.00400 0.94492 0.89280 1.23217 0.95872 0.88013 0.95395 1.88893 1.72190 1.36919 1.31395 1.24018 0.96364 1.00820 0.83052 1.22333 0.96302 0.91364 0.86665 0.87949 1.45205 1.73784 1.13984 1.07019 1.15845 0.77969 0.84909 0.80477 1.90860 1.59574 1.15326 1.82436 1.47425 1.71541 1.09869 1.06482 1.21583 0.99935 0.98962 0.78803 1.22031 0.98428 0.97782 0.98014 1.18627 0.97055 0.89299 0.91998 1.21258 1.17971 0.91323 1.24321 0.92633 1.24957 0.95285 0.98202 0.95523 1.69839 1.32215 1.12079 1.39027 0.86566 0.80500 0.80749 0.80367 1.19821 1.21037 1.21089 1.22020 0.96520 1.00819 0.96852 1.21906 1.00484 0.80439 0.98420 0.91797 0.92074 0.92006 0.92230 0.89470 0.91965 0.88128 0.76461 0.92407 0.90285 0.92078 0.93011 0.95428 0.93052 0.94293 0.87816 0.91910 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.92 37.16 0.33 -0.89 16 2 C -0.14 -1.26 3.38 -89.09 -0.30 -1.56 16 3 H 0.09 0.74 7.73 -51.93 -0.40 0.34 16 4 C 0.05 0.47 7.36 37.73 0.28 0.75 16 5 O -0.38 -4.57 11.52 -35.23 -0.41 -4.97 16 6 C 0.04 0.43 7.41 38.21 0.28 0.71 16 7 C 0.14 1.70 2.92 -65.92 -0.19 1.51 16 8 H 0.10 1.43 7.52 -51.93 -0.39 1.04 16 9 N -0.74 -10.06 5.13 -56.72 -0.29 -10.35 16 10 C 0.71 12.34 8.29 -86.92 -0.72 11.62 16 11 O -0.60 -12.24 15.57 5.29 0.08 -12.16 16 12 N -0.62 -10.93 2.97 -178.50 -0.53 -11.46 16 13 C 0.13 2.36 6.42 -3.71 -0.02 2.34 16 14 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 15 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 16 C -0.51 -13.38 8.56 -34.44 -0.29 -13.67 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -23.98 11.30 55.43 0.63 -23.35 16 20 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C -0.12 -2.63 5.15 -26.61 -0.14 -2.76 16 25 C 0.11 1.88 6.43 -3.71 -0.02 1.86 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.68 7.70 -51.93 -0.40 0.28 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.40 4.72 5.80 -40.82 -0.24 4.49 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.45 7.03 -51.93 -0.37 1.08 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.04 0.85 8.14 -51.94 -0.42 0.43 16 41 H 0.10 2.46 6.02 -51.92 -0.31 2.15 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.79 5.57 -51.93 -0.29 0.50 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -29.32 335.99 -8.71 -38.03 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.01 Total: 3.97 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.23 Total: -0.29 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.20 Total: -45.17 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.32 Total: -17.14 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.32 -8.71 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926007834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.958 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds