Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.45871 * 2 1 4 4 C 1.54486 * 110.51176 * 237.39348 * 2 1 3 5 5 O 1.44780 * 104.62854 * 217.27269 * 4 2 1 6 6 C 1.44422 * 105.29559 * 40.53961 * 5 4 2 7 7 C 1.54482 * 104.80452 * 319.45134 * 6 5 4 8 8 H 1.08999 * 110.62887 * 142.67569 * 7 6 5 9 9 N 1.46496 * 110.50989 * 265.33383 * 7 6 5 10 10 C 1.34773 * 120.00423 * 269.63910 * 9 7 6 11 11 O 1.21593 * 119.99315 * 354.90196 * 10 9 7 12 12 N 1.34773 * 120.00309 * 174.90265 * 10 9 7 13 13 C 1.46928 * 120.63173 * 4.74628 * 12 10 9 14 14 C 1.52757 * 109.01205 * 233.58731 * 13 12 10 15 15 C 1.53045 * 109.38270 * 305.59333 * 14 13 12 16 16 C 1.53039 * 109.54168 * 61.23550 * 15 14 13 17 17 H 1.09003 * 109.49492 * 58.58592 * 16 15 14 18 18 C 1.50699 * 109.52532 * 178.66842 * 16 15 14 19 19 H 1.07996 * 119.99824 * 5.25751 * 18 16 15 20 20 C 1.37876 * 120.00261 * 185.25946 * 18 16 15 21 21 N 1.31517 * 119.99868 * 355.12104 * 20 18 16 22 22 Si 1.86799 * 120.00305 * 175.12280 * 20 18 16 23 23 H 1.48500 * 109.46975 * 94.99749 * 22 20 18 24 24 H 1.48493 * 109.47216 * 214.99779 * 22 20 18 25 25 H 1.48504 * 109.47030 * 335.00214 * 22 20 18 26 26 C 1.46927 * 120.62743 * 185.03395 * 12 10 9 27 27 H 1.08996 * 109.46906 * 299.29652 * 1 2 3 28 28 H 1.09002 * 109.46804 * 59.30167 * 1 2 3 29 29 H 1.09004 * 109.46889 * 179.29494 * 1 2 3 30 30 H 1.08994 * 110.37075 * 336.07447 * 4 2 1 31 31 H 1.09006 * 110.36949 * 98.40260 * 4 2 1 32 32 H 1.09000 * 110.37657 * 200.61723 * 6 5 4 33 33 H 1.08999 * 110.46661 * 78.32941 * 6 5 4 34 34 H 0.97003 * 119.99561 * 89.64230 * 9 7 6 35 35 H 1.08999 * 109.58140 * 353.42437 * 13 12 10 36 36 H 1.09001 * 109.58360 * 113.84599 * 13 12 10 37 37 H 1.08991 * 109.56709 * 185.55416 * 14 13 12 38 38 H 1.08998 * 109.38878 * 65.51211 * 14 13 12 39 39 H 1.09006 * 109.45583 * 301.21451 * 15 14 13 40 40 H 1.09000 * 109.45739 * 181.26206 * 15 14 13 41 41 H 0.96994 * 120.00196 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.58309 * 246.14994 * 26 12 10 43 43 H 1.08998 * 109.59162 * 6.58063 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7797 -1.2189 5 8 3.2435 -1.4684 -0.7211 6 6 2.8788 -1.9394 0.5945 7 6 2.0714 -0.7798 1.2191 8 1 1.2490 -1.1654 1.8217 9 7 2.9432 0.0746 2.0291 10 6 3.1151 -0.1879 3.3398 11 8 2.4763 -1.0758 3.8708 12 7 3.9951 0.5337 4.0618 13 6 4.6978 1.6759 3.4613 14 6 6.2016 1.4950 3.6595 15 6 6.4965 1.2864 5.1467 16 6 5.7874 0.0217 5.6366 17 1 6.1279 -0.8348 5.0547 18 6 6.1045 -0.2014 7.0929 19 1 6.6771 0.5332 7.6395 20 6 5.6635 -1.3433 7.7274 21 7 4.8861 -2.1912 7.0900 22 14 6.1703 -1.6861 9.4923 23 1 5.1162 -1.1929 10.4147 24 1 6.3487 -3.1482 9.6810 25 1 7.4490 -0.9896 9.7844 26 6 4.2747 0.1893 5.4625 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 1.3295 -1.4966 -1.5706 31 1 2.3441 -0.0914 -2.0189 32 1 3.7715 -2.1420 1.1861 33 1 2.2618 -2.8350 0.5212 34 1 3.3966 0.8294 1.6220 35 1 4.4740 1.7232 2.3956 36 1 4.3765 2.5981 3.9455 37 1 6.7257 2.3828 3.3057 38 1 6.5387 0.6249 3.0963 39 1 6.1374 2.1463 5.7122 40 1 7.5714 1.1796 5.2922 41 1 4.5756 -2.9944 7.5364 42 1 3.9182 0.9879 6.1132 43 1 3.7720 -0.7439 5.7167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926022950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = -78.334875 kcal Electronic energy + Delta-G solvation = -23395.639879 eV Core-core repulsion = 20054.575814 eV Total energy + Delta-G solvation = -3341.064065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27205 -39.03076 -36.76011 -34.44615 -33.42743 -32.60786 -31.65571 -29.80471 -28.45052 -26.36004 -25.04695 -24.48427 -22.60950 -21.81387 -20.71040 -19.97237 -18.69056 -17.58914 -16.75923 -16.17889 -15.85431 -15.69737 -15.00410 -14.66307 -14.43021 -13.96730 -13.72795 -13.63508 -13.27598 -13.08490 -12.69018 -12.61253 -12.53636 -12.17029 -11.94357 -11.70208 -11.33059 -11.15258 -11.04531 -10.98291 -10.84412 -10.50813 -10.37499 -10.23672 -9.99255 -9.84670 -9.45167 -9.06508 -8.91279 -8.69778 -8.44010 -7.63916 -5.97678 -4.05797 3.17116 3.32940 3.40065 3.42868 3.76689 3.93523 4.31072 4.38146 4.46877 4.62592 4.81981 4.99634 5.21789 5.24841 5.31206 5.32971 5.39320 5.52098 5.52714 5.55042 5.64336 5.73306 5.83115 5.94811 5.96849 6.00758 6.17779 6.33417 6.58007 6.65165 6.69200 6.81616 6.86522 7.00161 7.07303 7.34621 7.51837 7.75146 7.93652 8.06323 8.42511 8.58064 8.98512 9.24051 9.59792 11.08182 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.004312 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.175522 B = 6492.111478 C = 6957.648725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.048 3.952 5 O -0.375 6.375 6 C 0.032 3.968 7 C 0.137 3.863 8 H 0.106 0.894 9 N -0.747 5.747 10 C 0.701 3.299 11 O -0.585 6.585 12 N -0.621 5.621 13 C 0.116 3.884 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.039 3.961 17 H 0.030 0.970 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.879 5.879 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.131 3.869 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.392 0.608 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 6.801 -15.683 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 H 0.106 0.894 4 C -0.029 4.029 5 O -0.294 6.294 6 C -0.046 4.046 7 C 0.030 3.970 8 H 0.123 0.877 9 N -0.406 5.406 10 C 0.402 3.598 11 O -0.463 6.463 12 N -0.358 5.358 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.049 0.951 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.010 3.990 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.228 0.772 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.307 5.923 -15.330 17.603 hybrid contribution 0.342 0.225 0.836 0.931 sum -5.965 6.147 -14.493 16.835 Atomic orbital electron populations 1.21771 0.93302 1.02463 1.02351 1.22825 0.97196 1.00663 0.94654 0.89419 1.23565 0.88283 0.95063 0.96030 1.89204 1.34764 1.73961 1.31460 1.23980 1.00863 0.96227 0.83538 1.22129 0.93164 0.90358 0.91375 0.87654 1.45376 1.52577 1.34082 1.08535 1.15968 0.80873 0.82251 0.80676 1.90914 1.50271 1.34671 1.70396 1.47802 1.42232 1.31019 1.14726 1.21403 0.93344 0.89615 0.96458 1.21875 0.94816 1.00958 0.99589 1.21616 1.00280 1.00280 0.92548 1.19005 0.90427 0.92277 0.96306 0.95139 1.21069 1.34859 1.05109 0.94990 0.92393 1.25054 0.94727 0.96168 0.98010 1.69924 1.32832 1.11895 1.36945 0.86595 0.78910 0.77526 0.85067 1.20741 1.21178 1.19887 1.22203 0.99886 1.01989 0.74909 0.91868 0.92135 0.92072 0.91973 0.89122 0.88328 0.91481 0.77159 0.92178 0.92168 0.92306 0.92157 0.93263 0.93010 0.92708 0.94247 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.95 37.16 0.33 -0.80 16 2 C -0.13 -1.28 3.47 -89.05 -0.31 -1.59 16 3 H 0.09 0.78 7.70 -51.93 -0.40 0.38 16 4 C 0.05 0.45 7.21 37.94 0.27 0.72 16 5 O -0.38 -4.97 11.66 -35.23 -0.41 -5.38 16 6 C 0.03 0.44 7.35 37.94 0.28 0.72 16 7 C 0.14 1.82 3.17 -66.36 -0.21 1.61 16 8 H 0.11 1.57 7.08 -51.93 -0.37 1.20 16 9 N -0.75 -11.36 5.00 -57.14 -0.29 -11.65 16 10 C 0.70 14.31 8.30 -86.92 -0.72 13.59 16 11 O -0.59 -14.52 15.40 5.28 0.08 -14.44 16 12 N -0.62 -12.59 2.98 -178.76 -0.53 -13.13 16 13 C 0.12 1.81 6.40 -3.93 -0.03 1.78 16 14 C -0.13 -2.17 6.07 -26.83 -0.16 -2.33 16 15 C -0.11 -2.19 5.11 -26.69 -0.14 -2.32 16 16 C 0.04 0.97 2.19 -91.65 -0.20 0.77 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.52 -14.21 8.49 -34.44 -0.29 -14.50 16 19 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 20 C 0.06 1.77 5.36 -17.82 -0.10 1.68 16 21 N -0.88 -25.86 11.61 55.43 0.64 -25.22 16 22 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.13 3.20 5.46 -3.71 -0.02 3.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.06 0.51 7.85 -51.93 -0.41 0.10 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.59 8.06 -51.93 -0.42 1.17 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.39 5.02 5.84 -40.82 -0.24 4.78 16 35 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.39 5.38 -51.93 -0.28 3.11 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -32.14 336.26 -8.76 -40.90 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.01 Total: 4.99 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.29 Total: 2.51 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.17 Total: -49.99 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.33 Total: -19.82 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.14 -8.76 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926022950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.437 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds