Wall clock time and date at job start Tue Mar 31 2020 05:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.45871 * 2 1 4 4 C 1.54486 * 110.51176 * 237.39348 * 2 1 3 5 5 O 1.44780 * 104.62854 * 217.27269 * 4 2 1 6 6 C 1.44422 * 105.29559 * 40.53961 * 5 4 2 7 7 C 1.54482 * 104.80452 * 319.45134 * 6 5 4 8 8 H 1.08999 * 110.62887 * 142.67569 * 7 6 5 9 9 N 1.46496 * 110.50989 * 265.33383 * 7 6 5 10 10 C 1.34773 * 120.00423 * 269.63910 * 9 7 6 11 11 O 1.21593 * 119.99315 * 354.90196 * 10 9 7 12 12 N 1.34773 * 120.00309 * 174.90265 * 10 9 7 13 13 C 1.46928 * 120.63173 * 4.74628 * 12 10 9 14 14 C 1.52757 * 109.01205 * 233.58731 * 13 12 10 15 15 C 1.53045 * 109.38270 * 305.59333 * 14 13 12 16 16 C 1.53039 * 109.54168 * 61.23550 * 15 14 13 17 17 H 1.09003 * 109.49492 * 58.58592 * 16 15 14 18 18 C 1.50699 * 109.52532 * 178.66842 * 16 15 14 19 19 H 1.07996 * 119.99824 * 5.25751 * 18 16 15 20 20 C 1.37876 * 120.00261 * 185.25946 * 18 16 15 21 21 N 1.31517 * 119.99868 * 355.12104 * 20 18 16 22 22 Si 1.86799 * 120.00305 * 175.12280 * 20 18 16 23 23 H 1.48500 * 109.46975 * 94.99749 * 22 20 18 24 24 H 1.48493 * 109.47216 * 214.99779 * 22 20 18 25 25 H 1.48504 * 109.47030 * 335.00214 * 22 20 18 26 26 C 1.46927 * 120.62743 * 185.03395 * 12 10 9 27 27 H 1.08996 * 109.46906 * 299.29652 * 1 2 3 28 28 H 1.09002 * 109.46804 * 59.30167 * 1 2 3 29 29 H 1.09004 * 109.46889 * 179.29494 * 1 2 3 30 30 H 1.08994 * 110.37075 * 336.07447 * 4 2 1 31 31 H 1.09006 * 110.36949 * 98.40260 * 4 2 1 32 32 H 1.09000 * 110.37657 * 200.61723 * 6 5 4 33 33 H 1.08999 * 110.46661 * 78.32941 * 6 5 4 34 34 H 0.97003 * 119.99561 * 89.64230 * 9 7 6 35 35 H 1.08999 * 109.58140 * 353.42437 * 13 12 10 36 36 H 1.09001 * 109.58360 * 113.84599 * 13 12 10 37 37 H 1.08991 * 109.56709 * 185.55416 * 14 13 12 38 38 H 1.08998 * 109.38878 * 65.51211 * 14 13 12 39 39 H 1.09006 * 109.45583 * 301.21451 * 15 14 13 40 40 H 1.09000 * 109.45739 * 181.26206 * 15 14 13 41 41 H 0.96994 * 120.00196 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.58309 * 246.14994 * 26 12 10 43 43 H 1.08998 * 109.59162 * 6.58063 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7797 -1.2189 5 8 3.2435 -1.4684 -0.7211 6 6 2.8788 -1.9394 0.5945 7 6 2.0714 -0.7798 1.2191 8 1 1.2490 -1.1654 1.8217 9 7 2.9432 0.0746 2.0291 10 6 3.1151 -0.1879 3.3398 11 8 2.4763 -1.0758 3.8708 12 7 3.9951 0.5337 4.0618 13 6 4.6978 1.6759 3.4613 14 6 6.2016 1.4950 3.6595 15 6 6.4965 1.2864 5.1467 16 6 5.7874 0.0217 5.6366 17 1 6.1279 -0.8348 5.0547 18 6 6.1045 -0.2014 7.0929 19 1 6.6771 0.5332 7.6395 20 6 5.6635 -1.3433 7.7274 21 7 4.8861 -2.1912 7.0900 22 14 6.1703 -1.6861 9.4923 23 1 5.1162 -1.1929 10.4147 24 1 6.3487 -3.1482 9.6810 25 1 7.4490 -0.9896 9.7844 26 6 4.2747 0.1893 5.4625 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 1.3295 -1.4966 -1.5706 31 1 2.3441 -0.0914 -2.0189 32 1 3.7715 -2.1420 1.1861 33 1 2.2618 -2.8350 0.5212 34 1 3.3966 0.8294 1.6220 35 1 4.4740 1.7232 2.3956 36 1 4.3765 2.5981 3.9455 37 1 6.7257 2.3828 3.3057 38 1 6.5387 0.6249 3.0963 39 1 6.1374 2.1463 5.7122 40 1 7.5714 1.1796 5.2922 41 1 4.5756 -2.9944 7.5364 42 1 3.9182 0.9879 6.1132 43 1 3.7720 -0.7439 5.7167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926022950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:23 Heat of formation + Delta-G solvation = -100.557893 kcal Electronic energy + Delta-G solvation = -23396.603541 eV Core-core repulsion = 20054.575814 eV Total energy + Delta-G solvation = -3342.027727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60043 -40.28865 -38.39111 -35.78732 -35.17614 -33.86885 -33.19619 -31.55840 -29.63079 -27.17634 -26.95141 -26.03508 -23.75053 -23.43693 -21.70718 -21.58150 -20.22944 -19.09398 -18.28558 -17.84688 -16.90984 -16.85301 -16.59147 -16.15105 -16.03130 -15.23817 -15.20248 -15.18312 -14.52464 -14.31225 -14.16394 -13.96018 -13.80179 -13.55107 -13.33291 -12.91136 -12.70691 -12.66771 -12.40718 -12.32229 -12.22025 -11.95899 -11.82442 -11.77174 -11.62385 -11.20760 -10.97860 -10.92977 -10.84452 -10.54216 -10.07254 -9.27436 -8.10927 -6.27301 1.40899 1.41492 1.53123 1.72997 2.21941 2.42437 2.98176 2.99469 3.19502 3.43862 3.78330 3.94713 4.05208 4.07908 4.16572 4.26698 4.28704 4.48333 4.59288 4.59798 4.71378 4.73678 4.75327 4.80654 4.83619 4.85801 5.01209 5.10341 5.12915 5.25203 5.27025 5.30231 5.32440 5.53691 5.57344 5.62735 5.77624 5.88747 5.96569 6.15309 6.35846 6.86511 7.10588 7.42799 7.65635 8.93440 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.004312 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.175522 B = 6492.111478 C = 6957.648725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 H 0.103 0.897 4 C 0.045 3.955 5 O -0.392 6.392 6 C 0.036 3.964 7 C 0.129 3.871 8 H 0.086 0.914 9 N -0.724 5.724 10 C 0.694 3.306 11 O -0.639 6.639 12 N -0.627 5.627 13 C 0.111 3.889 14 C -0.126 4.126 15 C -0.104 4.104 16 C 0.038 3.962 17 H -0.014 1.014 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.916 5.916 22 Si 0.958 3.042 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.261 1.261 26 C 0.146 3.854 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.407 0.593 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.259 0.741 42 H 0.035 0.965 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 9.350 -17.576 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 H 0.121 0.879 4 C -0.031 4.031 5 O -0.311 6.311 6 C -0.043 4.043 7 C 0.023 3.977 8 H 0.104 0.896 9 N -0.384 5.384 10 C 0.396 3.604 11 O -0.520 6.520 12 N -0.363 5.363 13 C -0.012 4.012 14 C -0.164 4.164 15 C -0.142 4.142 16 C 0.019 3.981 17 H 0.004 0.996 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.554 5.554 22 Si 0.783 3.217 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.185 1.185 26 C 0.023 3.977 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.247 0.753 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.105 8.532 -17.285 20.220 hybrid contribution 0.279 -0.565 1.355 1.495 sum -5.825 7.967 -15.930 18.739 Atomic orbital electron populations 1.21773 0.91954 1.02827 1.03097 1.22799 0.98159 1.00729 0.92300 0.87896 1.23842 0.87454 0.95594 0.96237 1.89185 1.36729 1.74481 1.30703 1.23802 0.99529 0.96964 0.83985 1.22326 0.92255 0.90921 0.92218 0.89596 1.45159 1.52257 1.34378 1.06566 1.16207 0.80509 0.81613 0.82088 1.90873 1.52336 1.36971 1.71853 1.47698 1.42709 1.32420 1.13441 1.21768 0.92450 0.88308 0.98633 1.21833 0.95639 1.02516 0.96436 1.21504 0.99546 0.97673 0.95479 1.18931 0.91156 0.93246 0.94805 0.99578 1.21520 1.34355 1.05175 0.96405 0.91894 1.25913 0.94661 0.96126 1.02300 1.70124 1.34266 1.12315 1.38738 0.85544 0.78989 0.77180 0.79966 1.20178 1.21299 1.18533 1.21588 0.99024 0.99524 0.77583 0.92839 0.89563 0.92074 0.90504 0.86517 0.91521 0.90561 0.75346 0.88397 0.90050 0.87672 0.93456 0.92296 0.93019 0.93184 0.94626 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.95 71.98 0.64 -1.22 16 2 C -0.12 -1.98 3.47 -9.77 -0.03 -2.02 16 3 H 0.10 1.42 7.70 -2.39 -0.02 1.40 16 4 C 0.04 0.70 7.21 72.49 0.52 1.23 16 5 O -0.39 -9.76 11.66 -148.98 -1.74 -11.50 16 6 C 0.04 0.99 7.35 72.49 0.53 1.52 16 7 C 0.13 3.39 3.17 46.01 0.15 3.54 16 8 H 0.09 2.63 7.08 -2.39 -0.02 2.62 16 9 N -0.72 -21.53 5.00 -452.96 -2.26 -23.79 16 10 C 0.69 29.09 8.30 179.06 1.49 30.58 16 11 O -0.64 -33.63 15.40 -4.01 -0.06 -33.70 16 12 N -0.63 -25.62 2.98 -837.74 -2.50 -28.11 16 13 C 0.11 3.14 6.40 86.22 0.55 3.69 16 14 C -0.13 -3.74 6.07 30.53 0.19 -3.55 16 15 C -0.10 -4.05 5.11 30.62 0.16 -3.90 16 16 C 0.04 1.95 2.19 -11.46 -0.03 1.93 16 17 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 18 C -0.54 -29.91 8.49 25.60 0.22 -29.70 16 19 H 0.06 3.36 7.75 -2.91 -0.02 3.34 16 20 C 0.01 0.54 5.36 84.65 0.45 0.99 16 21 N -0.92 -56.79 11.61 21.45 0.25 -56.54 16 22 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 26 C 0.15 7.43 5.46 86.36 0.47 7.90 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.08 1.01 7.85 -2.39 -0.02 0.99 16 31 H 0.12 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.07 2.26 8.06 -2.39 -0.02 2.24 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.41 9.36 5.84 -92.71 -0.54 8.81 16 35 H 0.10 2.04 5.57 -2.39 -0.01 2.03 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 4.26 5.38 -2.39 -0.01 4.25 16 Total: -1.00 -76.03 336.26 1.48 -74.55 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.45 Total: 21.26 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.31 Total: 10.99 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -4.51 Total: -108.45 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.80 Total: -45.19 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.03 1.48 -74.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926022950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.004 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds