Wall clock time and date at job start Tue Mar 31 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.54506 * 2 1 4 4 C 1.54100 * 110.48625 * 237.38075 * 2 1 3 5 5 O 1.43747 * 107.29162 * 243.35300 * 4 2 1 6 6 C 1.44378 * 106.97625 * 333.48785 * 5 4 2 7 7 C 1.54811 * 110.48827 * 122.61416 * 2 1 3 8 8 H 1.09002 * 110.93759 * 21.34226 * 7 2 1 9 9 N 1.46497 * 110.91022 * 257.75326 * 7 2 1 10 10 C 1.34775 * 120.00379 * 160.83874 * 9 7 2 11 11 O 1.21584 * 119.99718 * 5.07557 * 10 9 7 12 12 N 1.34774 * 120.00153 * 185.07533 * 10 9 7 13 13 C 1.46926 * 120.63174 * 354.96442 * 12 10 9 14 14 C 1.53194 * 108.77438 * 126.41603 * 13 12 10 15 15 C 1.53036 * 109.31584 * 54.63258 * 14 13 12 16 16 C 1.53036 * 109.54112 * 298.63991 * 15 14 13 17 17 H 1.09006 * 109.49167 * 301.37654 * 16 15 14 18 18 C 1.50700 * 109.50093 * 181.31719 * 16 15 14 19 19 H 1.08001 * 119.99474 * 359.97438 * 18 16 15 20 20 C 1.37875 * 120.00186 * 180.27228 * 18 16 15 21 21 N 1.31513 * 119.99938 * 359.72180 * 20 18 16 22 22 Si 1.86804 * 119.99831 * 179.72008 * 20 18 16 23 23 H 1.48501 * 109.47264 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46714 * 120.00329 * 22 20 18 25 25 H 1.48497 * 109.46910 * 240.00070 * 22 20 18 26 26 C 1.46931 * 120.63073 * 174.99017 * 12 10 9 27 27 H 1.09007 * 109.46867 * 297.38593 * 1 2 3 28 28 H 1.09005 * 109.47045 * 57.38571 * 1 2 3 29 29 H 1.09003 * 109.47197 * 177.38827 * 1 2 3 30 30 H 1.09002 * 109.87439 * 123.93198 * 4 2 1 31 31 H 1.08993 * 110.00295 * 2.84974 * 4 2 1 32 32 H 1.09004 * 110.61700 * 281.55711 * 6 5 4 33 33 H 1.09001 * 110.75211 * 158.62857 * 6 5 4 34 34 H 0.97006 * 120.00208 * 340.84231 * 9 7 2 35 35 H 1.08993 * 109.58688 * 6.63105 * 13 12 10 36 36 H 1.08996 * 109.58816 * 246.20097 * 13 12 10 37 37 H 1.09008 * 109.49501 * 294.67870 * 14 13 12 38 38 H 1.08999 * 109.49701 * 174.59080 * 14 13 12 39 39 H 1.09004 * 109.46063 * 178.60987 * 15 14 13 40 40 H 1.09006 * 109.45363 * 58.65937 * 15 14 13 41 41 H 0.97000 * 119.99817 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.58637 * 113.79984 * 26 12 10 43 43 H 1.09001 * 109.58425 * 353.36857 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0693 -0.7781 -1.2159 5 8 2.7954 -1.9110 -0.7102 6 6 3.2659 -1.5561 0.6078 7 6 2.0718 -0.7816 1.2215 8 1 1.3199 -1.4693 1.6087 9 7 2.5267 0.1356 2.2693 10 6 2.6676 -0.3042 3.5354 11 8 2.5068 -1.4819 3.7913 12 7 2.9868 0.5614 4.5179 13 6 3.2921 1.9650 4.2090 14 6 2.3978 2.8647 5.0679 15 6 2.5728 2.4931 6.5422 16 6 2.1452 1.0396 6.7579 17 1 1.1058 0.9172 6.4533 18 6 2.2872 0.6845 8.2156 19 1 2.6469 1.4216 8.9183 20 6 1.9638 -0.5830 8.6511 21 7 1.5262 -1.4806 7.7953 22 14 2.1473 -1.0254 10.4567 23 1 2.6540 0.1524 11.2059 24 1 0.8273 -1.4293 11.0039 25 1 3.1060 -2.1509 10.5955 26 6 3.0367 0.1192 5.9182 27 1 -0.3633 0.4727 0.9126 28 1 -0.3633 0.5539 -0.8657 29 1 -0.3634 -1.0266 -0.0468 30 1 2.7350 -0.1409 -1.7980 31 1 1.2415 -1.1165 -1.8390 32 1 4.1456 -0.9158 0.5418 33 1 3.4857 -2.4491 1.1929 34 1 2.7266 1.0596 2.0518 35 1 3.0982 2.1575 3.1539 36 1 4.3390 2.1692 4.4335 37 1 1.3562 2.7249 4.7786 38 1 2.6804 3.9069 4.9194 39 1 1.9561 3.1483 7.1575 40 1 3.6192 2.6095 6.8242 41 1 1.2990 -2.3725 8.1016 42 1 4.0627 0.1730 6.2821 43 1 2.6742 -0.9062 5.9907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926022951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:26 Heat of formation + Delta-G solvation = -78.057743 kcal Electronic energy + Delta-G solvation = -23344.630786 eV Core-core repulsion = 20003.578739 eV Total energy + Delta-G solvation = -3341.052047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27169 -39.10116 -36.80212 -34.60039 -33.43446 -32.56535 -31.69344 -29.79355 -28.49052 -26.41093 -25.07742 -24.47545 -22.45655 -21.84543 -20.85163 -20.08856 -18.75773 -17.59431 -16.81911 -16.22643 -15.98542 -15.25327 -15.08814 -14.70719 -14.40059 -14.04559 -13.75521 -13.72783 -13.56810 -12.89076 -12.66075 -12.58902 -12.51320 -12.23879 -12.18200 -11.91514 -11.33685 -11.09889 -11.01914 -10.94564 -10.82399 -10.49444 -10.39847 -10.23710 -9.89358 -9.83312 -9.49209 -9.11532 -8.95315 -8.77685 -8.42228 -7.66993 -5.98567 -4.07488 3.06483 3.31382 3.39498 3.42280 3.76482 3.93527 4.26779 4.37289 4.45924 4.61099 4.73010 4.99745 5.16848 5.21406 5.25348 5.31731 5.43876 5.47451 5.56231 5.58126 5.66215 5.74158 5.88436 5.90993 5.96167 6.05559 6.13856 6.29540 6.56409 6.59772 6.64385 6.78911 6.87079 6.97639 7.04670 7.32587 7.47410 7.74074 7.92114 8.06001 8.40779 8.54662 8.96307 9.21052 9.58306 11.06671 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024747 B = 0.004283 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.182695 B = 6535.733083 C = 7107.956342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.052 3.948 5 O -0.376 6.376 6 C 0.035 3.965 7 C 0.141 3.859 8 H 0.103 0.897 9 N -0.746 5.746 10 C 0.701 3.299 11 O -0.581 6.581 12 N -0.621 5.621 13 C 0.115 3.885 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.039 3.961 17 H 0.028 0.972 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.129 3.871 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.391 0.609 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 7.101 -16.160 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 H 0.104 0.896 4 C -0.025 4.025 5 O -0.294 6.294 6 C -0.043 4.043 7 C 0.034 3.966 8 H 0.121 0.879 9 N -0.407 5.407 10 C 0.402 3.598 11 O -0.457 6.457 12 N -0.358 5.358 13 C -0.009 4.009 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.046 0.954 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.008 3.992 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.228 0.772 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.233 5.820 -16.053 17.120 hybrid contribution 0.187 0.542 0.950 1.109 sum 1.420 6.362 -15.103 16.450 Atomic orbital electron populations 1.21810 0.93215 1.02628 1.02307 1.22758 0.97760 1.00177 0.94708 0.89563 1.23203 0.95812 0.88088 0.95388 1.88896 1.72153 1.36851 1.31515 1.24037 0.96336 1.00988 0.82916 1.22301 0.96286 0.91433 0.86597 0.87868 1.45260 1.74582 1.13499 1.07313 1.15949 0.78340 0.85363 0.80105 1.90929 1.57888 1.15075 1.81850 1.47798 1.71542 1.08063 1.08380 1.21500 0.99051 0.82669 0.97667 1.21950 0.99659 0.97588 0.97973 1.21612 1.00466 0.99962 0.92702 1.18996 0.95478 0.88668 0.94884 0.95375 1.21110 1.45047 0.97296 0.92521 0.92329 1.25056 0.94794 0.96593 0.97570 1.69900 1.43516 1.04577 1.33688 0.86545 0.77760 0.78422 0.85341 1.19802 1.21027 1.20952 1.22203 0.98760 1.04177 0.74033 0.91849 0.92240 0.91902 0.92412 0.89555 0.92114 0.87994 0.77220 0.92252 0.92080 0.92198 0.92349 0.93056 0.93186 0.92694 0.94246 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.92 37.15 0.33 -0.96 16 2 C -0.13 -1.30 3.38 -89.09 -0.30 -1.61 16 3 H 0.09 0.70 7.73 -51.93 -0.40 0.30 16 4 C 0.05 0.50 7.36 37.73 0.28 0.78 16 5 O -0.38 -4.94 11.52 -35.23 -0.41 -5.34 16 6 C 0.04 0.47 7.41 38.21 0.28 0.76 16 7 C 0.14 1.89 2.92 -65.93 -0.19 1.70 16 8 H 0.10 1.65 7.52 -51.93 -0.39 1.26 16 9 N -0.75 -10.88 5.13 -56.72 -0.29 -11.17 16 10 C 0.70 14.06 8.29 -86.92 -0.72 13.34 16 11 O -0.58 -14.34 15.57 5.29 0.08 -14.26 16 12 N -0.62 -12.34 2.97 -178.50 -0.53 -12.87 16 13 C 0.12 1.73 6.43 -3.71 -0.02 1.70 16 14 C -0.13 -2.07 6.08 -26.61 -0.16 -2.24 16 15 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 16 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 17 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -14.07 8.57 -34.44 -0.30 -14.37 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -25.73 11.39 55.43 0.63 -25.10 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.13 3.12 5.39 -3.71 -0.02 3.10 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.72 7.70 -51.93 -0.40 0.32 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.39 4.55 5.80 -40.82 -0.24 4.31 16 35 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.51 5.15 -51.93 -0.27 3.24 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -31.88 336.22 -8.75 -40.63 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.02 Total: 4.49 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.26 Total: 2.32 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.19 Total: -49.14 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.32 Total: -19.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.88 -8.75 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926022951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.432 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds