Wall clock time and date at job start Tue Mar 31 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.54506 * 2 1 4 4 C 1.54100 * 110.48625 * 237.38075 * 2 1 3 5 5 O 1.43747 * 107.29162 * 243.35300 * 4 2 1 6 6 C 1.44378 * 106.97625 * 333.48785 * 5 4 2 7 7 C 1.54811 * 110.48827 * 122.61416 * 2 1 3 8 8 H 1.09002 * 110.93759 * 21.34226 * 7 2 1 9 9 N 1.46497 * 110.91022 * 257.75326 * 7 2 1 10 10 C 1.34775 * 120.00379 * 160.83874 * 9 7 2 11 11 O 1.21584 * 119.99718 * 5.07557 * 10 9 7 12 12 N 1.34774 * 120.00153 * 185.07533 * 10 9 7 13 13 C 1.46926 * 120.63174 * 354.96442 * 12 10 9 14 14 C 1.53194 * 108.77438 * 126.41603 * 13 12 10 15 15 C 1.53036 * 109.31584 * 54.63258 * 14 13 12 16 16 C 1.53036 * 109.54112 * 298.63991 * 15 14 13 17 17 H 1.09006 * 109.49167 * 301.37654 * 16 15 14 18 18 C 1.50700 * 109.50093 * 181.31719 * 16 15 14 19 19 H 1.08001 * 119.99474 * 359.97438 * 18 16 15 20 20 C 1.37875 * 120.00186 * 180.27228 * 18 16 15 21 21 N 1.31513 * 119.99938 * 359.72180 * 20 18 16 22 22 Si 1.86804 * 119.99831 * 179.72008 * 20 18 16 23 23 H 1.48501 * 109.47264 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46714 * 120.00329 * 22 20 18 25 25 H 1.48497 * 109.46910 * 240.00070 * 22 20 18 26 26 C 1.46931 * 120.63073 * 174.99017 * 12 10 9 27 27 H 1.09007 * 109.46867 * 297.38593 * 1 2 3 28 28 H 1.09005 * 109.47045 * 57.38571 * 1 2 3 29 29 H 1.09003 * 109.47197 * 177.38827 * 1 2 3 30 30 H 1.09002 * 109.87439 * 123.93198 * 4 2 1 31 31 H 1.08993 * 110.00295 * 2.84974 * 4 2 1 32 32 H 1.09004 * 110.61700 * 281.55711 * 6 5 4 33 33 H 1.09001 * 110.75211 * 158.62857 * 6 5 4 34 34 H 0.97006 * 120.00208 * 340.84231 * 9 7 2 35 35 H 1.08993 * 109.58688 * 6.63105 * 13 12 10 36 36 H 1.08996 * 109.58816 * 246.20097 * 13 12 10 37 37 H 1.09008 * 109.49501 * 294.67870 * 14 13 12 38 38 H 1.08999 * 109.49701 * 174.59080 * 14 13 12 39 39 H 1.09004 * 109.46063 * 178.60987 * 15 14 13 40 40 H 1.09006 * 109.45363 * 58.65937 * 15 14 13 41 41 H 0.97000 * 119.99817 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.58637 * 113.79984 * 26 12 10 43 43 H 1.09001 * 109.58425 * 353.36857 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0693 -0.7781 -1.2159 5 8 2.7954 -1.9110 -0.7102 6 6 3.2659 -1.5561 0.6078 7 6 2.0718 -0.7816 1.2215 8 1 1.3199 -1.4693 1.6087 9 7 2.5267 0.1356 2.2693 10 6 2.6676 -0.3042 3.5354 11 8 2.5068 -1.4819 3.7913 12 7 2.9868 0.5614 4.5179 13 6 3.2921 1.9650 4.2090 14 6 2.3978 2.8647 5.0679 15 6 2.5728 2.4931 6.5422 16 6 2.1452 1.0396 6.7579 17 1 1.1058 0.9172 6.4533 18 6 2.2872 0.6845 8.2156 19 1 2.6469 1.4216 8.9183 20 6 1.9638 -0.5830 8.6511 21 7 1.5262 -1.4806 7.7953 22 14 2.1473 -1.0254 10.4567 23 1 2.6540 0.1524 11.2059 24 1 0.8273 -1.4293 11.0039 25 1 3.1060 -2.1509 10.5955 26 6 3.0367 0.1192 5.9182 27 1 -0.3633 0.4727 0.9126 28 1 -0.3633 0.5539 -0.8657 29 1 -0.3634 -1.0266 -0.0468 30 1 2.7350 -0.1409 -1.7980 31 1 1.2415 -1.1165 -1.8390 32 1 4.1456 -0.9158 0.5418 33 1 3.4857 -2.4491 1.1929 34 1 2.7266 1.0596 2.0518 35 1 3.0982 2.1575 3.1539 36 1 4.3390 2.1692 4.4335 37 1 1.3562 2.7249 4.7786 38 1 2.6804 3.9069 4.9194 39 1 1.9561 3.1483 7.1575 40 1 3.6192 2.6095 6.8242 41 1 1.2990 -2.3725 8.1016 42 1 4.0627 0.1730 6.2821 43 1 2.6742 -0.9062 5.9907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926022951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:26 Heat of formation + Delta-G solvation = -100.249020 kcal Electronic energy + Delta-G solvation = -23345.593072 eV Core-core repulsion = 20003.578739 eV Total energy + Delta-G solvation = -3342.014333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58098 -40.33418 -38.39983 -35.92292 -35.20693 -33.81757 -33.19043 -31.51032 -29.66305 -27.22247 -26.98435 -26.02050 -23.64021 -23.39048 -21.83225 -21.64740 -20.26699 -19.08565 -18.26368 -17.90069 -17.05549 -16.68149 -16.45100 -16.28678 -15.82753 -15.21080 -15.18650 -15.11132 -14.76618 -14.48065 -14.28938 -13.91301 -13.60450 -13.53997 -13.38599 -13.14679 -12.91092 -12.65481 -12.33857 -12.24782 -12.21100 -11.89687 -11.86556 -11.77259 -11.61856 -11.24470 -10.95694 -10.82520 -10.76305 -10.52082 -10.13047 -9.27467 -8.10375 -6.27451 1.39667 1.41671 1.53529 1.68032 2.21490 2.42083 2.85596 3.14605 3.20605 3.37379 3.78448 3.85993 4.00580 4.08840 4.16506 4.21751 4.29071 4.45329 4.61156 4.69960 4.73409 4.74976 4.76206 4.81788 4.85921 4.89826 4.96168 5.04212 5.11845 5.27386 5.28027 5.30485 5.34616 5.46248 5.56922 5.64655 5.86470 5.89596 5.97474 6.15986 6.36325 6.86161 7.11593 7.42851 7.66209 8.93105 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024747 B = 0.004283 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.182695 B = 6535.733083 C = 7107.956342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 H 0.116 0.884 4 C 0.048 3.952 5 O -0.396 6.396 6 C 0.041 3.959 7 C 0.134 3.866 8 H 0.068 0.932 9 N -0.720 5.720 10 C 0.694 3.306 11 O -0.638 6.638 12 N -0.626 5.626 13 C 0.109 3.891 14 C -0.125 4.125 15 C -0.105 4.105 16 C 0.038 3.962 17 H -0.014 1.014 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.916 5.916 22 Si 0.957 3.043 23 H -0.259 1.259 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.143 3.857 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.411 0.589 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.259 0.741 42 H 0.033 0.967 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 10.242 -17.902 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.134 0.866 4 C -0.029 4.029 5 O -0.314 6.314 6 C -0.037 4.037 7 C 0.027 3.973 8 H 0.086 0.914 9 N -0.380 5.380 10 C 0.396 3.604 11 O -0.519 6.519 12 N -0.362 5.362 13 C -0.013 4.013 14 C -0.163 4.163 15 C -0.143 4.143 16 C 0.018 3.982 17 H 0.004 0.996 18 C -0.573 4.573 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.555 5.555 22 Si 0.782 3.218 23 H -0.183 1.183 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.020 3.980 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.251 0.749 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.056 9.043 -17.844 20.110 hybrid contribution -0.093 -0.428 1.439 1.505 sum 1.963 8.615 -16.404 18.633 Atomic orbital electron populations 1.21822 0.92826 1.02319 1.02947 1.22749 0.97971 1.00993 0.92243 0.86640 1.23470 0.96568 0.87449 0.95366 1.88876 1.72745 1.38823 1.30988 1.23864 0.96819 0.99979 0.83087 1.22368 0.95854 0.91694 0.87374 0.91378 1.44929 1.73204 1.14502 1.05410 1.16196 0.78014 0.84606 0.81596 1.90893 1.60168 1.17813 1.83040 1.47680 1.71525 1.10341 1.06621 1.21892 1.00042 0.79170 1.00187 1.21906 0.99465 1.00234 0.94709 1.21504 1.00579 0.96078 0.96111 1.18926 0.93160 0.92380 0.93694 0.99623 1.21564 1.44249 0.97351 0.94158 0.91922 1.25898 0.94621 0.96675 1.01799 1.70104 1.44951 1.04721 1.35695 0.85520 0.77578 0.78356 0.80306 1.18298 1.20896 1.20953 1.21579 0.97717 1.01743 0.76945 0.93110 0.89389 0.93045 0.89835 0.88137 0.90421 0.90880 0.74916 0.87945 0.90210 0.93099 0.87658 0.93028 0.92447 0.93217 0.94867 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.92 71.98 0.64 -1.63 16 2 C -0.12 -1.99 3.38 -9.80 -0.03 -2.02 16 3 H 0.12 1.29 7.73 -2.39 -0.02 1.27 16 4 C 0.05 0.77 7.36 72.35 0.53 1.31 16 5 O -0.40 -9.95 11.52 -148.98 -1.72 -11.66 16 6 C 0.04 1.08 7.41 72.66 0.54 1.62 16 7 C 0.13 3.54 2.92 46.29 0.14 3.67 16 8 H 0.07 2.31 7.52 -2.39 -0.02 2.29 16 9 N -0.72 -20.06 5.13 -451.63 -2.32 -22.38 16 10 C 0.69 28.41 8.29 179.06 1.48 29.89 16 11 O -0.64 -33.59 15.57 -3.98 -0.06 -33.66 16 12 N -0.63 -24.83 2.97 -836.92 -2.49 -27.32 16 13 C 0.11 2.90 6.43 86.36 0.56 3.45 16 14 C -0.13 -3.47 6.08 30.67 0.19 -3.28 16 15 C -0.11 -3.96 5.11 30.62 0.16 -3.80 16 16 C 0.04 1.90 2.25 -11.46 -0.03 1.88 16 17 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 18 C -0.53 -29.56 8.57 25.60 0.22 -29.34 16 19 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 20 C 0.01 0.53 5.30 84.65 0.45 0.98 16 21 N -0.92 -56.53 11.39 21.45 0.24 -56.28 16 22 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 C 0.14 7.22 5.39 86.36 0.47 7.68 16 27 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.35 7.70 -2.39 -0.02 1.33 16 32 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.41 8.03 5.80 -92.70 -0.54 7.49 16 35 H 0.10 1.84 5.57 -2.39 -0.01 1.82 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 4.52 5.15 -2.39 -0.01 4.51 16 Total: -1.00 -76.54 336.22 1.45 -75.09 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.46 Total: 19.13 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.31 Total: 10.40 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.56 Total: -105.98 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.78 Total: -45.32 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.54 1.45 -75.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926022951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.155 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds