Wall clock time and date at job start Tue Mar 31 2020 05:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.80757 * 2 1 4 4 C 1.55000 * 110.90810 * 236.36980 * 2 1 3 5 5 O 1.44371 * 103.49451 * 204.77734 * 4 2 1 6 6 C 1.43748 * 106.97124 * 40.06177 * 5 4 2 7 7 C 1.54092 * 107.29729 * 333.48289 * 6 5 4 8 8 H 1.09001 * 110.49134 * 243.35599 * 7 6 5 9 9 N 1.46498 * 110.48711 * 120.70587 * 7 6 5 10 10 C 1.34778 * 119.99787 * 95.21474 * 9 7 6 11 11 O 1.21583 * 120.00105 * 4.97143 * 10 9 7 12 12 N 1.34781 * 119.99811 * 184.96959 * 10 9 7 13 13 C 1.46925 * 120.63082 * 354.60885 * 12 10 9 14 14 C 1.53188 * 108.78010 * 233.58646 * 13 12 10 15 15 C 1.53048 * 109.31338 * 305.37079 * 14 13 12 16 16 C 1.53039 * 109.53575 * 61.36165 * 15 14 13 17 17 H 1.08999 * 109.50165 * 58.58715 * 16 15 14 18 18 C 1.50706 * 109.49395 * 178.65482 * 16 15 14 19 19 H 1.07993 * 119.99906 * 359.97438 * 18 16 15 20 20 C 1.37882 * 119.99849 * 180.02562 * 18 16 15 21 21 N 1.31510 * 119.99907 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99685 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47318 * 89.99519 * 22 20 18 24 24 H 1.48507 * 109.46631 * 209.99589 * 22 20 18 25 25 H 1.48503 * 109.46987 * 329.98900 * 22 20 18 26 26 C 1.46927 * 120.62745 * 174.33843 * 12 10 9 27 27 H 1.08991 * 109.47549 * 178.26863 * 1 2 3 28 28 H 1.09002 * 109.47134 * 58.26149 * 1 2 3 29 29 H 1.09001 * 109.46860 * 298.26655 * 1 2 3 30 30 H 1.09000 * 110.61634 * 323.28628 * 4 2 1 31 31 H 1.09003 * 110.61640 * 86.27549 * 4 2 1 32 32 H 1.08996 * 109.88036 * 92.91701 * 6 5 4 33 33 H 1.09008 * 109.87702 * 214.06094 * 6 5 4 34 34 H 0.97005 * 120.00404 * 275.21310 * 9 7 6 35 35 H 1.09002 * 109.58639 * 353.38161 * 13 12 10 36 36 H 1.09001 * 109.58195 * 113.80106 * 13 12 10 37 37 H 1.09004 * 109.49708 * 65.31746 * 14 13 12 38 38 H 1.08996 * 109.49965 * 185.38123 * 14 13 12 39 39 H 1.08993 * 109.45701 * 181.38555 * 15 14 13 40 40 H 1.08998 * 109.45597 * 301.35965 * 15 14 13 41 41 H 0.97003 * 120.00004 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.58253 * 246.19647 * 26 12 10 43 43 H 1.08992 * 109.58823 * 6.61970 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0831 -0.8019 -1.2056 5 8 3.3940 -1.2142 -0.7630 6 6 3.2717 -1.5885 0.6194 7 6 2.0825 -0.8017 1.2036 8 1 2.4210 -0.1260 1.9891 9 7 1.0639 -1.7198 1.7191 10 6 1.0533 -2.0496 3.0259 11 8 1.8310 -1.5167 3.7937 12 7 0.1806 -2.9701 3.4815 13 6 -0.8427 -3.5363 2.5921 14 6 -2.2165 -3.3622 3.2471 15 6 -2.1909 -3.9779 4.6481 16 6 -1.1512 -3.2537 5.5064 17 1 -1.3973 -2.1932 5.5585 18 6 -1.1501 -3.8387 6.8953 19 1 -1.8238 -4.6460 7.1417 20 6 -0.2897 -3.3425 7.8516 21 7 0.5303 -2.3591 7.5516 22 14 -0.2888 -4.0672 9.5733 23 1 0.6825 -5.1885 9.6379 24 1 0.0992 -3.0191 10.5512 25 1 -1.6476 -4.5697 9.8995 26 6 0.2383 -3.4308 4.8755 27 1 -0.3634 -1.0271 -0.0310 28 1 -0.3633 0.5406 -0.8740 29 1 -0.3633 0.4867 0.9051 30 1 1.4561 -1.6699 -1.4093 31 1 2.1582 -0.1659 -2.0877 32 1 3.0825 -2.6590 0.6982 33 1 4.1854 -1.3312 1.1553 34 1 0.3971 -2.0904 1.1199 35 1 -0.8250 -3.0139 1.6356 36 1 -0.6443 -4.5966 2.4354 37 1 -2.4526 -2.3006 3.3205 38 1 -2.9735 -3.8623 2.6431 39 1 -3.1745 -3.8771 5.1069 40 1 -1.9302 -5.0337 4.5760 41 1 1.1359 -2.0103 8.2243 42 1 0.5229 -4.4826 4.9012 43 1 0.9693 -2.8387 5.4260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926022953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:31 Heat of formation + Delta-G solvation = -72.552118 kcal Electronic energy + Delta-G solvation = -23545.799396 eV Core-core repulsion = 20204.986091 eV Total energy + Delta-G solvation = -3340.813306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41171 -39.03921 -36.77694 -34.75119 -33.39156 -32.26247 -31.64278 -29.79211 -28.68279 -26.47513 -25.06653 -24.46737 -22.61741 -21.83763 -20.72485 -19.83059 -19.01466 -17.63815 -16.56203 -16.29789 -15.94047 -15.45556 -15.12262 -14.80610 -14.42646 -13.97941 -13.83148 -13.70476 -13.36883 -13.16774 -12.72348 -12.59088 -12.39836 -12.24215 -12.01356 -11.83409 -11.39215 -11.13487 -11.01421 -10.91851 -10.77120 -10.52213 -10.40053 -10.23421 -9.87891 -9.82312 -9.46118 -9.09750 -8.94803 -8.82821 -8.41838 -7.66507 -5.97104 -4.06391 3.12972 3.32491 3.39489 3.41602 3.75026 3.83359 4.32979 4.35225 4.46110 4.59659 4.77576 4.99149 5.17864 5.23112 5.26678 5.32610 5.37994 5.46979 5.47540 5.56439 5.60809 5.81026 5.83939 5.91668 5.97792 6.01373 6.14168 6.29847 6.56913 6.58077 6.65521 6.79393 6.86825 6.98267 7.03343 7.33087 7.48468 7.74854 7.92948 8.06375 8.41678 8.55038 8.97179 9.21941 9.59163 11.07836 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.004397 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.618276 B = 6366.595271 C = 6976.640205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 H 0.096 0.904 4 C 0.049 3.951 5 O -0.379 6.379 6 C 0.034 3.966 7 C 0.133 3.867 8 H 0.109 0.891 9 N -0.748 5.748 10 C 0.700 3.300 11 O -0.580 6.580 12 N -0.622 5.622 13 C 0.116 3.884 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.523 4.523 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.128 3.872 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.391 0.609 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 1.881 -17.495 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 H 0.115 0.885 4 C -0.027 4.027 5 O -0.297 6.297 6 C -0.044 4.044 7 C 0.026 3.974 8 H 0.127 0.873 9 N -0.408 5.408 10 C 0.401 3.599 11 O -0.457 6.457 12 N -0.358 5.358 13 C -0.008 4.008 14 C -0.171 4.171 15 C -0.147 4.147 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 C 0.008 3.992 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.230 0.770 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.124 2.357 -16.925 17.089 hybrid contribution -0.535 -0.620 0.755 1.114 sum -0.660 1.738 -16.170 16.277 Atomic orbital electron populations 1.21630 0.93497 1.01855 1.02583 1.23023 0.97280 1.00508 0.94670 0.88524 1.23646 0.84570 0.97472 0.97055 1.88876 1.28837 1.86428 1.25575 1.23772 0.99515 0.99295 0.81848 1.22032 0.87677 0.91171 0.96515 0.87272 1.45472 1.34923 1.51702 1.08750 1.15987 0.81915 0.80323 0.81662 1.90930 1.43682 1.55966 1.55146 1.47795 1.31968 1.42084 1.13956 1.21489 0.89194 0.98115 0.92051 1.21945 0.95303 1.01407 0.98482 1.21615 1.00538 0.99261 0.93330 1.19053 0.89610 0.96316 0.92935 0.95297 1.21077 1.21141 1.19164 0.94734 0.92416 1.25056 0.95438 0.94775 0.98726 1.69904 1.22254 1.25180 1.34199 0.86608 0.78260 0.78815 0.84402 1.20651 1.21225 1.19962 1.22288 1.03251 0.97864 0.75821 0.92654 0.92113 0.91520 0.92263 0.88938 0.91774 0.89015 0.77048 0.92398 0.92137 0.92192 0.92335 0.93054 0.93202 0.92672 0.94240 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.56 37.16 0.32 -0.88 16 2 C -0.14 -1.32 3.70 -88.61 -0.33 -1.64 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.05 0.46 7.17 38.21 0.27 0.73 16 5 O -0.38 -4.72 11.52 -35.23 -0.41 -5.13 16 6 C 0.03 0.44 7.50 37.73 0.28 0.72 16 7 C 0.13 1.75 3.42 -66.41 -0.23 1.52 16 8 H 0.11 1.67 7.35 -51.93 -0.38 1.29 16 9 N -0.75 -10.83 4.21 -57.18 -0.24 -11.07 16 10 C 0.70 14.00 8.29 -86.91 -0.72 13.28 16 11 O -0.58 -14.36 15.31 5.29 0.08 -14.27 16 12 N -0.62 -12.35 2.97 -178.23 -0.53 -12.87 16 13 C 0.12 1.75 6.38 -3.71 -0.02 1.72 16 14 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 15 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 16 C 0.04 0.99 2.26 -91.43 -0.21 0.78 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -14.14 8.56 -34.44 -0.29 -14.44 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 21 N -0.88 -25.74 11.41 55.43 0.63 -25.11 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.13 3.11 5.44 -3.49 -0.02 3.09 16 27 H 0.05 0.45 6.27 -51.93 -0.33 0.13 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.50 8.03 -51.93 -0.42 0.09 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.39 4.67 4.13 -40.82 -0.17 4.50 16 35 H 0.06 0.68 5.65 -51.93 -0.29 0.39 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.50 5.14 -51.93 -0.27 3.24 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -31.88 332.33 -8.69 -40.57 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.88 Total: 4.64 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.34 Total: 1.99 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.14 Total: -49.06 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.32 Total: -19.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.88 -8.69 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926022953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.986 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds