Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.80757 * 2 1 4 4 C 1.55000 * 110.90810 * 236.36980 * 2 1 3 5 5 O 1.44371 * 103.49451 * 204.77734 * 4 2 1 6 6 C 1.43748 * 106.97124 * 40.06177 * 5 4 2 7 7 C 1.54092 * 107.29729 * 333.48289 * 6 5 4 8 8 H 1.09001 * 110.49134 * 243.35599 * 7 6 5 9 9 N 1.46498 * 110.48711 * 120.70587 * 7 6 5 10 10 C 1.34778 * 119.99787 * 95.21474 * 9 7 6 11 11 O 1.21583 * 120.00105 * 4.97143 * 10 9 7 12 12 N 1.34781 * 119.99811 * 184.96959 * 10 9 7 13 13 C 1.46925 * 120.63082 * 354.60885 * 12 10 9 14 14 C 1.53188 * 108.78010 * 233.58646 * 13 12 10 15 15 C 1.53048 * 109.31338 * 305.37079 * 14 13 12 16 16 C 1.53039 * 109.53575 * 61.36165 * 15 14 13 17 17 H 1.08999 * 109.50165 * 58.58715 * 16 15 14 18 18 C 1.50706 * 109.49395 * 178.65482 * 16 15 14 19 19 H 1.07993 * 119.99906 * 359.97438 * 18 16 15 20 20 C 1.37882 * 119.99849 * 180.02562 * 18 16 15 21 21 N 1.31510 * 119.99907 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99685 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47318 * 89.99519 * 22 20 18 24 24 H 1.48507 * 109.46631 * 209.99589 * 22 20 18 25 25 H 1.48503 * 109.46987 * 329.98900 * 22 20 18 26 26 C 1.46927 * 120.62745 * 174.33843 * 12 10 9 27 27 H 1.08991 * 109.47549 * 178.26863 * 1 2 3 28 28 H 1.09002 * 109.47134 * 58.26149 * 1 2 3 29 29 H 1.09001 * 109.46860 * 298.26655 * 1 2 3 30 30 H 1.09000 * 110.61634 * 323.28628 * 4 2 1 31 31 H 1.09003 * 110.61640 * 86.27549 * 4 2 1 32 32 H 1.08996 * 109.88036 * 92.91701 * 6 5 4 33 33 H 1.09008 * 109.87702 * 214.06094 * 6 5 4 34 34 H 0.97005 * 120.00404 * 275.21310 * 9 7 6 35 35 H 1.09002 * 109.58639 * 353.38161 * 13 12 10 36 36 H 1.09001 * 109.58195 * 113.80106 * 13 12 10 37 37 H 1.09004 * 109.49708 * 65.31746 * 14 13 12 38 38 H 1.08996 * 109.49965 * 185.38123 * 14 13 12 39 39 H 1.08993 * 109.45701 * 181.38555 * 15 14 13 40 40 H 1.08998 * 109.45597 * 301.35965 * 15 14 13 41 41 H 0.97003 * 120.00004 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.58253 * 246.19647 * 26 12 10 43 43 H 1.08992 * 109.58823 * 6.61970 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0831 -0.8019 -1.2056 5 8 3.3940 -1.2142 -0.7630 6 6 3.2717 -1.5885 0.6194 7 6 2.0825 -0.8017 1.2036 8 1 2.4210 -0.1260 1.9891 9 7 1.0639 -1.7198 1.7191 10 6 1.0533 -2.0496 3.0259 11 8 1.8310 -1.5167 3.7937 12 7 0.1806 -2.9701 3.4815 13 6 -0.8427 -3.5363 2.5921 14 6 -2.2165 -3.3622 3.2471 15 6 -2.1909 -3.9779 4.6481 16 6 -1.1512 -3.2537 5.5064 17 1 -1.3973 -2.1932 5.5585 18 6 -1.1501 -3.8387 6.8953 19 1 -1.8238 -4.6460 7.1417 20 6 -0.2897 -3.3425 7.8516 21 7 0.5303 -2.3591 7.5516 22 14 -0.2888 -4.0672 9.5733 23 1 0.6825 -5.1885 9.6379 24 1 0.0992 -3.0191 10.5512 25 1 -1.6476 -4.5697 9.8995 26 6 0.2383 -3.4308 4.8755 27 1 -0.3634 -1.0271 -0.0310 28 1 -0.3633 0.5406 -0.8740 29 1 -0.3633 0.4867 0.9051 30 1 1.4561 -1.6699 -1.4093 31 1 2.1582 -0.1659 -2.0877 32 1 3.0825 -2.6590 0.6982 33 1 4.1854 -1.3312 1.1553 34 1 0.3971 -2.0904 1.1199 35 1 -0.8250 -3.0139 1.6356 36 1 -0.6443 -4.5966 2.4354 37 1 -2.4526 -2.3006 3.3205 38 1 -2.9735 -3.8623 2.6431 39 1 -3.1745 -3.8771 5.1069 40 1 -1.9302 -5.0337 4.5760 41 1 1.1359 -2.0103 8.2243 42 1 0.5229 -4.4826 4.9012 43 1 0.9693 -2.8387 5.4260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926022953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = -94.073306 kcal Electronic energy + Delta-G solvation = -23546.732625 eV Core-core repulsion = 20204.986091 eV Total energy + Delta-G solvation = -3341.746534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68503 -40.29589 -38.37063 -36.00854 -35.21332 -33.66413 -32.98361 -31.49952 -29.84779 -27.22893 -26.99063 -26.04275 -23.65402 -23.40768 -22.07675 -21.01100 -20.57325 -19.14147 -18.23922 -17.69451 -17.04534 -16.67525 -16.58974 -16.20727 -16.00078 -15.28387 -15.20254 -15.18213 -14.60104 -14.46094 -14.23349 -14.00366 -13.74988 -13.53165 -13.21645 -13.01330 -12.87928 -12.67683 -12.29495 -12.25528 -12.18531 -11.96725 -11.85324 -11.67188 -11.60752 -11.22104 -10.94559 -10.83668 -10.72163 -10.51573 -10.20630 -9.27868 -8.09053 -6.26578 1.41328 1.41704 1.52621 1.72665 2.20279 2.42684 2.89092 3.06799 3.20243 3.43516 3.79494 3.82944 4.00330 4.13683 4.18965 4.23315 4.28656 4.45984 4.59825 4.63010 4.71082 4.72975 4.75597 4.80621 4.85264 4.88208 5.02247 5.11047 5.11809 5.26600 5.28006 5.29185 5.34201 5.47288 5.57257 5.64866 5.84197 5.90097 5.98459 6.15696 6.36721 6.86812 7.10780 7.43520 7.66764 8.94019 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.004397 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.618276 B = 6366.595271 C = 6976.640205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 H 0.104 0.896 4 C 0.048 3.952 5 O -0.391 6.391 6 C 0.040 3.960 7 C 0.126 3.874 8 H 0.079 0.921 9 N -0.721 5.721 10 C 0.694 3.306 11 O -0.638 6.638 12 N -0.626 5.626 13 C 0.110 3.890 14 C -0.125 4.125 15 C -0.105 4.105 16 C 0.039 3.961 17 H -0.015 1.015 18 C -0.537 4.537 19 H 0.062 0.938 20 C 0.010 3.990 21 N -0.914 5.914 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.289 1.289 25 H -0.262 1.262 26 C 0.142 3.858 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.408 0.592 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.259 0.741 42 H 0.035 0.965 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 0.790 -20.247 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 H 0.122 0.878 4 C -0.028 4.028 5 O -0.310 6.310 6 C -0.038 4.038 7 C 0.019 3.981 8 H 0.098 0.902 9 N -0.382 5.382 10 C 0.395 3.605 11 O -0.519 6.519 12 N -0.362 5.362 13 C -0.012 4.012 14 C -0.163 4.163 15 C -0.143 4.143 16 C 0.019 3.981 17 H 0.003 0.997 18 C -0.575 4.575 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.553 5.553 22 Si 0.782 3.218 23 H -0.200 1.200 24 H -0.215 1.215 25 H -0.186 1.186 26 C 0.019 3.981 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.249 0.751 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.889 1.246 -19.758 19.887 hybrid contribution -0.013 -0.247 1.556 1.575 sum -1.903 0.999 -18.202 18.328 Atomic orbital electron populations 1.21638 0.92276 1.02625 1.02875 1.23012 0.98200 1.00355 0.92846 0.87806 1.23893 0.83275 0.98357 0.97273 1.88871 1.30852 1.86552 1.24765 1.23582 0.98929 0.98817 0.82466 1.22144 0.87926 0.90976 0.97056 0.90232 1.45166 1.35238 1.51120 1.06714 1.16215 0.81315 0.80010 0.82913 1.90893 1.45932 1.57957 1.57115 1.47679 1.33272 1.42192 1.13067 1.21868 0.87243 0.99647 0.92488 1.21904 0.96937 1.00959 0.96511 1.21504 0.98496 0.99249 0.95008 1.18984 0.91531 0.94118 0.93446 0.99728 1.21536 1.20733 1.18993 0.96261 0.91954 1.25898 0.95118 0.95109 1.02833 1.70112 1.23166 1.26868 1.35156 0.85574 0.78771 0.77947 0.79491 1.20023 1.21450 1.18643 1.21673 1.01652 0.96541 0.78207 0.91743 0.89468 0.93466 0.90714 0.86394 0.92227 0.89848 0.75069 0.88375 0.90127 0.93227 0.87631 0.93054 0.92354 0.93233 0.94633 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.56 71.98 0.62 -1.32 16 2 C -0.12 -2.14 3.70 -9.49 -0.04 -2.18 16 3 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.05 0.73 7.17 72.67 0.52 1.25 16 5 O -0.39 -9.02 11.52 -148.98 -1.72 -10.73 16 6 C 0.04 1.02 7.50 72.35 0.54 1.57 16 7 C 0.13 3.26 3.42 45.98 0.16 3.41 16 8 H 0.08 2.57 7.35 -2.39 -0.02 2.56 16 9 N -0.72 -20.21 4.21 -453.09 -1.91 -22.12 16 10 C 0.69 28.36 8.29 179.05 1.48 29.85 16 11 O -0.64 -33.53 15.31 -3.98 -0.06 -33.59 16 12 N -0.63 -24.92 2.97 -836.07 -2.48 -27.40 16 13 C 0.11 2.96 6.38 86.36 0.55 3.52 16 14 C -0.13 -3.53 6.08 30.67 0.19 -3.34 16 15 C -0.10 -3.98 5.10 30.62 0.16 -3.83 16 16 C 0.04 1.96 2.26 -11.32 -0.03 1.93 16 17 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 18 C -0.54 -29.73 8.56 25.60 0.22 -29.51 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.56 5.31 84.66 0.45 1.01 16 21 N -0.91 -56.46 11.41 21.45 0.24 -56.21 16 22 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.14 7.16 5.44 86.51 0.47 7.63 16 27 H 0.06 0.78 6.27 -2.39 -0.01 0.77 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.94 8.03 -2.39 -0.02 0.92 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.56 7.93 -2.39 -0.02 1.54 16 33 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.41 8.50 4.13 -92.70 -0.38 8.12 16 35 H 0.10 1.86 5.65 -2.39 -0.01 1.85 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 4.55 5.14 -2.39 -0.01 4.54 16 Total: -1.00 -75.58 332.33 2.01 -73.57 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.61 Total: 19.88 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.29 Total: 9.99 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.14 Total: -105.73 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.78 Total: -44.33 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.58 2.01 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926022953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.507 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds