Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 N 1.46903 * 109.47121 * 119.99450 * 2 1 3 5 5 C 1.46901 * 111.00231 * 275.00118 * 4 2 1 6 6 C 1.52997 * 109.47272 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46968 * 300.00002 * 6 5 4 8 8 C 1.52998 * 109.47188 * 59.99706 * 6 5 4 9 9 C 1.52993 * 109.47205 * 180.02562 * 6 5 4 10 10 C 1.50703 * 109.47166 * 179.97438 * 9 6 5 11 11 H 1.07992 * 120.00176 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99978 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00242 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99931 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47040 * 90.00453 * 14 12 10 16 16 H 1.48504 * 109.47075 * 210.00151 * 14 12 10 17 17 H 1.48499 * 109.47449 * 329.99808 * 14 12 10 18 18 C 1.50699 * 109.47611 * 239.99316 * 2 1 3 19 19 C 1.41383 * 126.79819 * 84.99536 * 18 2 1 20 20 C 1.35455 * 103.98301 * 180.02562 * 19 18 2 21 21 C 1.50698 * 126.77243 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.47242 * 90.00690 * 21 20 19 23 23 O 1.34036 * 106.44593 * 0.02562 * 20 19 18 24 24 N 1.20921 * 111.57107 * 359.97438 * 23 20 19 25 25 H 1.08999 * 109.46407 * 60.00346 * 1 2 3 26 26 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47119 * 300.00532 * 1 2 3 28 28 H 1.00900 * 110.99993 * 38.95292 * 4 2 1 29 29 H 1.09000 * 109.46907 * 299.99711 * 5 4 2 30 30 H 1.09001 * 109.47079 * 59.99962 * 5 4 2 31 31 H 1.09000 * 109.47282 * 60.00037 * 7 6 5 32 32 H 1.09005 * 109.47071 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47266 * 299.99870 * 7 6 5 34 34 H 1.09002 * 109.46687 * 60.00411 * 8 6 5 35 35 H 1.09005 * 109.46971 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47281 * 300.00098 * 8 6 5 37 37 H 1.09002 * 109.47164 * 299.99892 * 9 6 5 38 38 H 1.08994 * 109.47689 * 59.99833 * 9 6 5 39 39 H 0.96995 * 120.00220 * 179.97438 * 13 12 10 40 40 H 1.08001 * 128.00739 * 0.27353 * 19 18 2 41 41 H 1.09005 * 109.46998 * 210.00176 * 21 20 19 42 42 H 1.08995 * 109.47298 * 330.00375 * 21 20 19 43 43 H 0.96694 * 114.00196 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3469 6 6 2.5950 -0.5329 3.5746 7 6 1.6451 -1.6886 3.8954 8 6 3.9921 -1.0861 3.2864 9 6 2.6598 0.4201 4.7697 10 6 3.1641 -0.3244 5.9791 11 1 3.4130 -1.3725 5.9030 12 6 3.3076 0.3326 7.1827 13 7 3.7482 -0.3170 8.2380 14 14 2.8777 2.1457 7.3142 15 1 1.4482 2.2894 7.6898 16 1 3.7285 2.7822 8.3517 17 1 3.1147 2.8068 6.0058 18 6 2.0325 -0.7105 -1.2303 19 6 2.2217 -0.1496 -2.5143 20 6 2.6806 -1.1839 -3.2589 21 6 3.0515 -1.1496 -4.7191 22 8 4.4343 -0.8143 -4.8517 23 8 2.7398 -2.2438 -2.4405 24 7 2.3773 -1.9624 -1.3217 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.4496 -1.4978 1.4102 29 1 2.7589 1.0463 2.1182 30 1 1.0871 0.6165 2.5525 31 1 1.5985 -2.3677 3.0440 32 1 2.0100 -2.2267 4.7703 33 1 0.6497 -1.2946 4.1007 34 1 4.6688 -0.2627 3.0579 35 1 4.3574 -1.6241 4.1612 36 1 3.9455 -1.7652 2.4350 37 1 3.3363 1.2437 4.5414 38 1 1.6644 0.8138 4.9749 39 1 3.8495 0.1453 9.0847 40 1 2.0454 0.8687 -2.8277 41 1 2.8710 -2.1287 -5.1629 42 1 2.4456 -0.4017 -5.2304 43 1 4.7433 -0.7743 -5.7670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = 0.989625 kcal Electronic energy + Delta-G solvation = -22333.578660 eV Core-core repulsion = 18995.954364 eV Total energy + Delta-G solvation = -3337.624296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.98432 -38.20621 -37.42401 -35.97913 -33.43225 -32.39728 -31.95417 -29.57826 -27.48284 -26.91859 -26.32513 -25.45903 -23.93969 -22.85228 -21.85356 -19.76162 -18.28135 -18.01899 -17.37952 -17.18007 -16.75078 -15.56561 -15.38104 -15.07219 -14.60908 -14.29657 -14.08957 -13.58540 -13.37525 -13.24391 -13.06731 -12.57723 -12.43916 -12.25674 -11.99006 -11.83266 -11.59932 -11.32437 -11.04586 -10.93448 -10.81494 -10.61505 -10.46276 -10.31500 -10.11879 -9.79199 -9.65662 -9.62246 -9.26023 -8.87909 -8.47124 -8.17829 -5.97173 -3.93194 1.25504 2.17452 2.86442 3.33479 3.41287 3.44867 3.89694 4.12824 4.17952 4.50485 4.51050 4.66000 4.80823 4.93551 4.99751 5.07501 5.27835 5.35618 5.37206 5.51970 5.60790 5.64545 5.74398 5.84000 5.91201 6.02631 6.17132 6.27814 6.44990 6.65281 6.72738 6.85083 7.05943 7.11528 7.16245 7.21197 7.29579 7.36890 7.48932 7.62234 7.88192 8.26933 8.63130 9.09213 9.65814 11.16044 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.003143 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.778213 B = 8905.454527 C = 9008.346387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.159 3.841 3 H 0.097 0.903 4 N -0.675 5.675 5 C 0.068 3.932 6 C -0.048 4.048 7 C -0.131 4.131 8 C -0.118 4.118 9 C -0.004 4.004 10 C -0.506 4.506 11 H 0.078 0.922 12 C 0.064 3.936 13 N -0.906 5.906 14 Si 0.876 3.124 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.267 1.267 18 C 0.033 3.967 19 C -0.204 4.204 20 C -0.050 4.050 21 C 0.162 3.838 22 O -0.564 6.564 23 O 0.106 5.894 24 N -0.332 5.332 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.347 0.653 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.015 0.985 38 H 0.008 0.992 39 H 0.261 0.739 40 H 0.170 0.830 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 1.041 -27.846 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.047 3.953 3 H 0.115 0.885 4 N -0.307 5.307 5 C -0.061 4.061 6 C -0.048 4.048 7 C -0.188 4.188 8 C -0.175 4.175 9 C -0.042 4.042 10 C -0.544 4.544 11 H 0.096 0.904 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.704 3.296 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.191 1.191 18 C -0.127 4.127 19 C -0.226 4.226 20 C -0.114 4.114 21 C 0.083 3.917 22 O -0.371 6.371 23 O 0.036 5.964 24 N -0.033 5.033 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.187 0.813 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.066 0.136 -26.277 26.761 hybrid contribution -1.225 1.948 -0.498 2.355 sum -6.292 2.084 -26.775 27.583 Atomic orbital electron populations 1.22469 0.95738 1.02670 1.02730 1.19836 0.92532 0.96652 0.86277 0.88487 1.60464 1.57105 1.09899 1.03212 1.22199 0.98843 0.94946 0.90069 1.20409 0.95588 0.95790 0.93023 1.21788 0.98351 0.97831 1.00862 1.21612 0.95355 1.00024 1.00529 1.19627 0.96009 0.94933 0.93599 1.21143 1.42765 0.98290 0.92199 0.90409 1.25021 0.94992 0.97731 0.95891 1.69911 1.47351 1.36444 1.00870 0.86843 0.78368 0.86493 0.77923 1.20539 1.21571 1.19135 1.23534 1.02006 0.90667 0.96509 1.22389 1.06623 1.01010 0.92604 1.23962 1.03975 0.87907 0.95513 1.20204 0.83703 1.01135 0.86631 1.86582 1.24320 1.93351 1.32861 1.84880 1.62421 1.34802 1.14298 1.73901 1.14212 1.17481 0.97696 0.91939 0.92186 0.91336 0.83287 0.91486 0.95591 0.94546 0.91116 0.94159 0.94300 0.92127 0.93587 0.96711 0.97391 0.92911 0.81283 0.91097 0.90156 0.76269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.14 37.16 0.34 -1.50 16 2 C 0.16 1.98 3.10 -68.86 -0.21 1.77 16 3 H 0.10 1.15 7.80 -51.93 -0.40 0.74 16 4 N -0.67 -10.19 5.31 -107.95 -0.57 -10.76 16 5 C 0.07 1.13 4.45 -3.82 -0.02 1.11 16 6 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 7 C -0.13 -2.50 7.89 37.16 0.29 -2.21 16 8 C -0.12 -2.41 8.07 37.16 0.30 -2.11 16 9 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 10 C -0.51 -14.20 8.20 -34.44 -0.28 -14.48 16 11 H 0.08 2.34 5.92 -52.49 -0.31 2.03 16 12 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 13 N -0.91 -28.15 13.96 55.43 0.77 -27.38 16 14 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 18 C 0.03 0.43 6.28 -82.10 -0.52 -0.09 16 19 C -0.20 -2.14 11.06 -39.38 -0.44 -2.57 16 20 C -0.05 -0.51 7.12 -35.30 -0.25 -0.76 16 21 C 0.16 0.96 7.61 36.00 0.27 1.23 16 22 O -0.56 -4.05 13.64 -35.23 -0.48 -4.53 16 23 O 0.11 1.40 11.20 17.19 0.19 1.59 16 24 N -0.33 -4.94 11.89 33.42 0.40 -4.54 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 27 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 28 H 0.35 5.27 6.51 -39.29 -0.26 5.01 16 29 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 30 H 0.03 0.41 7.44 -51.93 -0.39 0.03 16 31 H 0.04 0.61 6.57 -51.93 -0.34 0.27 16 32 H 0.07 1.52 6.61 -51.93 -0.34 1.18 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.36 6.62 -51.93 -0.34 1.02 16 36 H 0.05 0.89 7.60 -51.93 -0.39 0.49 16 37 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.39 0.60 9.12 45.56 0.42 1.01 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -34.12 345.98 -5.99 -40.11 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.06 Total: 2.03 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.79 Total: -19.06 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.60 Total: -42.68 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: -0.29 Total: -2.94 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.12 -5.99 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.100 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds