Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 N 1.46903 * 109.47121 * 119.99450 * 2 1 3 5 5 C 1.46901 * 111.00231 * 275.00118 * 4 2 1 6 6 C 1.52997 * 109.47272 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46968 * 300.00002 * 6 5 4 8 8 C 1.52998 * 109.47188 * 59.99706 * 6 5 4 9 9 C 1.52993 * 109.47205 * 180.02562 * 6 5 4 10 10 C 1.50703 * 109.47166 * 179.97438 * 9 6 5 11 11 H 1.07992 * 120.00176 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99978 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00242 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99931 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47040 * 90.00453 * 14 12 10 16 16 H 1.48504 * 109.47075 * 210.00151 * 14 12 10 17 17 H 1.48499 * 109.47449 * 329.99808 * 14 12 10 18 18 C 1.50699 * 109.47611 * 239.99316 * 2 1 3 19 19 C 1.41383 * 126.79819 * 84.99536 * 18 2 1 20 20 C 1.35455 * 103.98301 * 180.02562 * 19 18 2 21 21 C 1.50698 * 126.77243 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.47242 * 90.00690 * 21 20 19 23 23 O 1.34036 * 106.44593 * 0.02562 * 20 19 18 24 24 N 1.20921 * 111.57107 * 359.97438 * 23 20 19 25 25 H 1.08999 * 109.46407 * 60.00346 * 1 2 3 26 26 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47119 * 300.00532 * 1 2 3 28 28 H 1.00900 * 110.99993 * 38.95292 * 4 2 1 29 29 H 1.09000 * 109.46907 * 299.99711 * 5 4 2 30 30 H 1.09001 * 109.47079 * 59.99962 * 5 4 2 31 31 H 1.09000 * 109.47282 * 60.00037 * 7 6 5 32 32 H 1.09005 * 109.47071 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47266 * 299.99870 * 7 6 5 34 34 H 1.09002 * 109.46687 * 60.00411 * 8 6 5 35 35 H 1.09005 * 109.46971 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47281 * 300.00098 * 8 6 5 37 37 H 1.09002 * 109.47164 * 299.99892 * 9 6 5 38 38 H 1.08994 * 109.47689 * 59.99833 * 9 6 5 39 39 H 0.96995 * 120.00220 * 179.97438 * 13 12 10 40 40 H 1.08001 * 128.00739 * 0.27353 * 19 18 2 41 41 H 1.09005 * 109.46998 * 210.00176 * 21 20 19 42 42 H 1.08995 * 109.47298 * 330.00375 * 21 20 19 43 43 H 0.96694 * 114.00196 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3469 6 6 2.5950 -0.5329 3.5746 7 6 1.6451 -1.6886 3.8954 8 6 3.9921 -1.0861 3.2864 9 6 2.6598 0.4201 4.7697 10 6 3.1641 -0.3244 5.9791 11 1 3.4130 -1.3725 5.9030 12 6 3.3076 0.3326 7.1827 13 7 3.7482 -0.3170 8.2380 14 14 2.8777 2.1457 7.3142 15 1 1.4482 2.2894 7.6898 16 1 3.7285 2.7822 8.3517 17 1 3.1147 2.8068 6.0058 18 6 2.0325 -0.7105 -1.2303 19 6 2.2217 -0.1496 -2.5143 20 6 2.6806 -1.1839 -3.2589 21 6 3.0515 -1.1496 -4.7191 22 8 4.4343 -0.8143 -4.8517 23 8 2.7398 -2.2438 -2.4405 24 7 2.3773 -1.9624 -1.3217 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.4496 -1.4978 1.4102 29 1 2.7589 1.0463 2.1182 30 1 1.0871 0.6165 2.5525 31 1 1.5985 -2.3677 3.0440 32 1 2.0100 -2.2267 4.7703 33 1 0.6497 -1.2946 4.1007 34 1 4.6688 -0.2627 3.0579 35 1 4.3574 -1.6241 4.1612 36 1 3.9455 -1.7652 2.4350 37 1 3.3363 1.2437 4.5414 38 1 1.6644 0.8138 4.9749 39 1 3.8495 0.1453 9.0847 40 1 2.0454 0.8687 -2.8277 41 1 2.8710 -2.1287 -5.1629 42 1 2.4456 -0.4017 -5.2304 43 1 4.7433 -0.7743 -5.7670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926426324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = -24.844663 kcal Electronic energy + Delta-G solvation = -22334.698919 eV Core-core repulsion = 18995.954364 eV Total energy + Delta-G solvation = -3338.744555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.86917 -39.56014 -37.88019 -37.27379 -34.75879 -33.98281 -32.98162 -30.80794 -29.31388 -27.97461 -27.50370 -26.76807 -25.13501 -23.78897 -23.52677 -20.65383 -19.53284 -18.90848 -18.87783 -18.26595 -17.92270 -16.65208 -16.52012 -16.03397 -15.77247 -15.59270 -15.38551 -14.89239 -14.64717 -14.36323 -14.24962 -14.13091 -13.85555 -13.53879 -13.10955 -12.89193 -12.82686 -12.66863 -12.55136 -12.41694 -12.24624 -12.16910 -12.07795 -11.72923 -11.40724 -11.11494 -11.00745 -10.93508 -10.82698 -10.70222 -10.46748 -9.32157 -8.21790 -6.22635 0.48363 1.30744 1.35731 1.38144 1.49363 2.20005 2.39763 3.00643 3.13080 3.25796 3.58318 3.89605 4.01882 4.07832 4.11286 4.15624 4.22958 4.29281 4.32821 4.41818 4.58035 4.64724 4.73210 4.74686 4.84003 4.88748 4.90722 5.00592 5.06493 5.09430 5.14484 5.20404 5.34451 5.41318 5.48714 5.59776 5.71621 5.79372 6.07388 6.39633 6.43785 6.84796 6.90966 7.39738 7.41110 8.94736 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.003143 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.778213 B = 8905.454527 C = 9008.346387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.158 3.842 3 H 0.108 0.892 4 N -0.686 5.686 5 C 0.082 3.918 6 C -0.048 4.048 7 C -0.123 4.123 8 C -0.107 4.107 9 C -0.001 4.001 10 C -0.505 4.505 11 H 0.040 0.960 12 C -0.001 4.001 13 N -0.957 5.957 14 Si 0.944 3.056 15 H -0.268 1.268 16 H -0.289 1.289 17 H -0.247 1.247 18 C 0.021 3.979 19 C -0.208 4.208 20 C -0.051 4.051 21 C 0.162 3.838 22 O -0.592 6.592 23 O 0.086 5.914 24 N -0.373 5.373 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.344 0.656 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.262 0.738 40 H 0.199 0.801 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 3.331 -30.784 31.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.047 3.953 3 H 0.125 0.875 4 N -0.317 5.317 5 C -0.047 4.047 6 C -0.048 4.048 7 C -0.181 4.181 8 C -0.165 4.165 9 C -0.039 4.039 10 C -0.543 4.543 11 H 0.059 0.941 12 C -0.197 4.197 13 N -0.599 5.599 14 Si 0.769 3.231 15 H -0.194 1.194 16 H -0.216 1.216 17 H -0.171 1.171 18 C -0.139 4.139 19 C -0.229 4.229 20 C -0.115 4.115 21 C 0.083 3.917 22 O -0.404 6.404 23 O 0.018 5.982 24 N -0.077 5.077 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.165 0.835 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.216 0.784 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.419 2.420 -29.281 30.074 hybrid contribution -0.747 1.132 0.325 1.394 sum -7.166 3.552 -28.956 30.040 Atomic orbital electron populations 1.22380 0.94034 1.02470 1.03848 1.19948 0.93865 0.96654 0.84809 0.87460 1.60370 1.57997 1.09880 1.03500 1.21924 0.99363 0.94477 0.88935 1.20342 0.95468 0.95560 0.93426 1.21682 0.98396 0.97763 1.00213 1.21490 0.95874 0.99787 0.99337 1.19578 0.95870 0.95167 0.93270 1.21432 1.41769 0.97128 0.94008 0.94130 1.25970 0.95200 1.02990 0.95517 1.70075 1.49442 1.38690 1.01650 0.85745 0.78454 0.80273 0.78670 1.19360 1.21567 1.17067 1.23829 1.01822 0.90578 0.97658 1.22763 1.06416 1.02350 0.91409 1.24855 1.02640 0.86948 0.97035 1.20501 0.83764 1.03379 0.84013 1.86502 1.25013 1.93512 1.35329 1.84818 1.62796 1.36138 1.14398 1.73891 1.16103 1.18789 0.98885 0.89868 0.93036 0.91104 0.83528 0.91277 0.94167 0.92388 0.94595 0.93150 0.94403 0.95374 0.92547 0.96706 0.96510 0.92890 0.78368 0.89359 0.86714 0.73607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.14 71.98 0.66 -2.39 16 2 C 0.16 3.58 3.10 44.17 0.14 3.72 16 3 H 0.11 2.20 7.80 -2.39 -0.02 2.18 16 4 N -0.69 -19.49 5.31 -495.45 -2.63 -22.12 16 5 C 0.08 2.53 4.45 86.30 0.38 2.91 16 6 C -0.05 -1.86 0.60 -52.18 -0.03 -1.89 16 7 C -0.12 -4.68 7.89 71.98 0.57 -4.12 16 8 C -0.11 -4.44 8.07 71.98 0.58 -3.86 16 9 C 0.00 -0.05 3.11 29.85 0.09 0.05 16 10 C -0.51 -29.04 8.20 25.60 0.21 -28.83 16 11 H 0.04 2.58 5.92 -2.91 -0.02 2.56 16 12 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 13 N -0.96 -61.28 13.96 21.45 0.30 -60.98 16 14 Si 0.94 45.07 27.47 68.60 1.88 46.95 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 17 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 18 C 0.02 0.50 6.28 43.58 0.27 0.78 16 19 C -0.21 -3.82 11.06 22.40 0.25 -3.57 16 20 C -0.05 -0.95 7.12 25.04 0.18 -0.77 16 21 C 0.16 1.43 7.61 71.24 0.54 1.97 16 22 O -0.59 -7.04 13.64 -148.98 -2.03 -9.07 16 23 O 0.09 2.22 11.20 71.67 0.80 3.02 16 24 N -0.37 -10.89 11.89 -49.56 -0.59 -11.48 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.07 1.26 7.45 -2.38 -0.02 1.24 16 28 H 0.34 9.96 6.51 -89.69 -0.58 9.38 16 29 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 30 H 0.04 1.14 7.44 -2.39 -0.02 1.13 16 31 H 0.06 1.93 6.57 -2.39 -0.02 1.91 16 32 H 0.03 1.59 6.61 -2.38 -0.02 1.57 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.03 1.30 6.62 -2.38 -0.02 1.29 16 36 H 0.06 2.18 7.60 -2.39 -0.02 2.16 16 37 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 38 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 39 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.41 0.19 9.12 -74.06 -0.68 -0.48 16 Total: -1.00 -76.14 345.98 1.74 -74.40 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.30 Total: 14.88 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 4.30 Total: -35.61 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -2.92 Total: -94.57 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -1.23 Total: -6.05 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -76.14 1.74 -74.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.554 kcal (2) G-P(sol) polarization free energy of solvation -76.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds