Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35715 * 116.99665 * 2 1 4 4 C 1.41932 * 126.87447 * 180.02562 * 3 2 1 5 5 C 1.35275 * 103.95651 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.70927 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46489 * 20.00101 * 6 5 4 8 8 C 1.52995 * 109.47145 * 260.00217 * 6 5 4 9 9 N 1.46896 * 109.46841 * 140.00053 * 6 5 4 10 10 C 1.46904 * 110.99720 * 205.00142 * 9 6 5 11 11 C 1.53004 * 109.47019 * 179.97438 * 10 9 6 12 12 C 1.53000 * 109.47328 * 299.99839 * 11 10 9 13 13 C 1.52999 * 109.47083 * 59.99996 * 11 10 9 14 14 C 1.53000 * 109.46864 * 180.02562 * 11 10 9 15 15 C 1.50702 * 109.46908 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99983 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00063 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99734 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47150 * 59.99711 * 19 17 15 21 21 H 1.48498 * 109.47561 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47290 * 299.99707 * 19 17 15 23 23 O 1.34080 * 106.58414 * 0.02562 * 5 4 3 24 24 N 1.20913 * 111.71636 * 359.97438 * 23 5 4 25 25 H 1.09006 * 109.47249 * 299.99750 * 1 2 3 26 26 H 1.09000 * 109.47295 * 59.99873 * 1 2 3 27 27 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.07999 * 128.02445 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.46757 * 180.02562 * 8 6 5 30 30 H 1.09001 * 109.47116 * 299.99873 * 8 6 5 31 31 H 1.08996 * 109.47253 * 59.99898 * 8 6 5 32 32 H 1.00906 * 111.00179 * 328.94944 * 9 6 5 33 33 H 1.08996 * 109.47364 * 300.00174 * 10 9 6 34 34 H 1.09001 * 109.46881 * 60.00272 * 10 9 6 35 35 H 1.08999 * 109.46618 * 59.99928 * 12 11 10 36 36 H 1.08992 * 109.47349 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.47189 * 300.00590 * 12 11 10 38 38 H 1.09004 * 109.46974 * 59.99745 * 13 11 10 39 39 H 1.08997 * 109.47054 * 179.97438 * 13 11 10 40 40 H 1.08999 * 109.47207 * 300.00283 * 13 11 10 41 41 H 1.08996 * 109.47348 * 300.00114 * 14 11 10 42 42 H 1.08998 * 109.47558 * 60.00281 * 14 11 10 43 43 H 0.97006 * 119.99749 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2093 0.0000 4 6 3.4433 1.4528 -0.0005 5 6 3.5395 2.8021 0.0003 6 6 4.8087 3.6147 -0.0003 7 1 5.6350 2.9975 -0.3530 8 6 5.1045 4.0996 1.4203 9 7 4.6481 4.7728 -0.8896 10 6 5.9494 5.2388 -1.3873 11 6 5.7417 6.4427 -2.3084 12 6 4.8601 6.0345 -3.4904 13 6 5.0604 7.5695 -1.5292 14 6 7.0969 6.9276 -2.8272 15 6 6.8925 8.1138 -3.7340 16 1 5.8956 8.4844 -3.9218 17 6 7.9779 8.7252 -4.3246 18 7 9.1918 8.2735 -4.0963 19 14 7.7245 10.1951 -5.4492 20 1 7.0642 11.2891 -4.6926 21 1 9.0398 10.6659 -5.9526 22 1 6.8679 9.7992 -6.5959 23 8 2.2850 3.2752 0.0018 24 7 1.4700 2.3820 0.0014 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.2447 0.7287 -0.0014 29 1 6.0222 4.6878 1.4197 30 1 4.2781 4.7168 1.7730 31 1 5.2236 3.2403 2.0801 32 1 4.0246 4.5585 -1.6535 33 1 6.5776 5.5292 -0.5452 34 1 6.4345 4.4362 -1.9428 35 1 3.8947 5.6887 -3.1211 36 1 4.7126 6.8920 -4.1468 37 1 5.3455 5.2317 -4.0454 38 1 5.6885 7.8603 -0.6871 39 1 4.9129 8.4273 -2.1853 40 1 4.0949 7.2237 -1.1599 41 1 7.7254 7.2183 -1.9854 42 1 7.5819 6.1248 -3.3824 43 1 9.9556 8.7040 -4.5116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = 13.536592 kcal Electronic energy + Delta-G solvation = -22388.298970 eV Core-core repulsion = 19051.218751 eV Total energy + Delta-G solvation = -3337.080219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.03177 -39.05646 -38.07566 -35.68673 -33.27502 -32.47336 -31.26172 -29.40254 -27.85224 -26.88604 -26.33930 -25.51868 -23.55659 -23.45562 -22.10546 -20.81666 -18.38351 -17.90180 -17.51746 -16.90076 -16.23994 -15.72598 -15.62861 -15.40114 -14.73068 -14.58644 -14.13376 -13.74556 -13.46944 -13.05891 -12.74258 -12.51039 -12.28466 -12.12996 -12.07232 -11.98951 -11.76946 -11.59092 -11.21821 -10.92422 -10.86016 -10.77556 -10.48556 -10.27960 -10.14780 -9.74930 -9.68759 -9.41474 -9.02870 -8.84405 -8.30921 -8.27157 -5.95836 -3.95804 1.25105 2.08388 2.52644 2.94910 3.35545 3.40160 3.42559 3.98334 4.16859 4.49995 4.63423 4.75667 4.82582 4.84016 5.09615 5.11559 5.18946 5.28273 5.40084 5.53205 5.61255 5.70899 5.72577 5.82068 5.96853 6.19421 6.21100 6.30724 6.49919 6.67381 6.73617 6.77675 6.84243 7.11193 7.20672 7.26612 7.32844 7.51925 7.69952 7.84867 8.04343 8.09897 8.48654 9.09282 9.67007 11.15780 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.003030 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.016201 B = 9238.146755 C = 9520.219943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.286 6.286 3 C 0.205 3.795 4 C -0.236 4.236 5 C 0.006 3.994 6 C 0.163 3.837 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.678 5.678 10 C 0.068 3.932 11 C -0.057 4.057 12 C -0.131 4.131 13 C -0.117 4.117 14 C 0.034 3.966 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 O 0.115 5.885 24 N -0.411 5.411 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.177 0.823 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.345 0.655 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 -14.835 9.890 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.192 6.192 3 C 0.007 3.993 4 C -0.259 4.259 5 C -0.059 4.059 6 C 0.052 3.948 7 H 0.095 0.905 8 C -0.198 4.198 9 N -0.311 5.311 10 C -0.060 4.060 11 C -0.058 4.058 12 C -0.188 4.188 13 C -0.174 4.174 14 C -0.004 4.004 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.204 1.204 23 O 0.055 5.945 24 N -0.137 5.137 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.195 0.805 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.382 -14.239 10.359 22.116 hybrid contribution 0.649 -0.412 -1.343 1.547 sum -12.733 -14.650 9.016 21.402 Atomic orbital electron populations 1.23051 0.76938 1.03945 1.02384 1.86176 1.22507 1.21035 1.89516 1.21996 0.90859 0.85726 1.00699 1.21773 0.94354 0.95574 1.14179 1.24556 0.88534 0.92931 0.99886 1.20213 0.87463 0.90156 0.96994 0.90466 1.21839 1.03397 1.01336 0.93218 1.60727 1.14718 1.32134 1.23570 1.22239 0.88446 0.97216 0.98093 1.20626 0.98906 0.92946 0.93286 1.21786 0.97254 1.01372 0.98391 1.21610 0.98810 0.98004 0.99016 1.19122 0.89601 0.95848 0.95779 1.21198 0.92734 1.13440 1.27167 0.92328 1.25009 0.95360 0.97319 0.96884 1.69957 0.98036 1.41288 1.44511 0.86728 0.77135 0.83330 0.81215 1.20301 1.21471 1.20377 1.84867 1.11978 1.29468 1.68211 1.74158 1.15963 0.96685 1.26881 0.92306 0.92232 0.87758 0.80530 0.90841 0.91243 0.92383 0.83487 0.90993 0.95426 0.94780 0.91615 0.94095 0.94094 0.92682 0.93711 0.96602 0.96900 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.34 16 2 O -0.29 -3.23 10.57 -18.85 -0.20 -3.43 16 3 C 0.20 2.56 8.01 -16.66 -0.13 2.43 16 4 C -0.24 -2.60 11.11 -39.22 -0.44 -3.03 16 5 C 0.01 0.06 5.96 -35.36 -0.21 -0.15 16 6 C 0.16 1.80 3.10 -68.87 -0.21 1.59 16 7 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 8 C -0.14 -1.42 9.40 37.15 0.35 -1.07 16 9 N -0.68 -9.10 5.51 -107.95 -0.60 -9.69 16 10 C 0.07 1.08 4.45 -3.82 -0.02 1.06 16 11 C -0.06 -1.09 0.60 -154.51 -0.09 -1.19 16 12 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 13 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 14 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 15 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 16 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 O 0.12 1.55 11.19 17.07 0.19 1.74 16 24 N -0.41 -5.60 11.54 30.38 0.35 -5.25 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.07 0.76 7.45 -51.93 -0.39 0.38 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.34 4.71 6.39 -39.29 -0.25 4.46 16 33 H 0.07 1.14 7.43 -51.93 -0.39 0.76 16 34 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 35 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 36 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 40 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -30.03 349.27 -5.75 -35.78 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.93 Total: -0.29 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 0.45 Total: -14.75 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.49 Total: -40.75 kcal Atomic # 8 Polarization: -1.68 SS G_CDS: -0.01 Total: -1.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.03 -5.75 -35.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.319 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds