Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45207 * 109.47013 * 2 1 4 4 C 1.34798 * 116.99600 * 180.02562 * 3 2 1 5 5 O 1.21532 * 120.00448 * 359.97438 * 4 3 2 6 6 C 1.46951 * 119.99760 * 180.02562 * 4 3 2 7 7 C 1.33088 * 120.00118 * 180.02562 * 6 4 3 8 8 C 1.50699 * 119.99891 * 179.97438 * 7 6 4 9 9 N 1.46908 * 109.46767 * 124.99820 * 8 7 6 10 10 C 1.46954 * 110.99966 * 66.20188 * 9 8 7 11 11 C 1.53057 * 109.36263 * 183.18687 * 10 9 8 12 12 N 1.46956 * 109.36162 * 301.59585 * 11 10 9 13 13 C 1.46899 * 110.99677 * 183.18894 * 12 11 10 14 14 C 1.50698 * 109.47292 * 170.00200 * 13 12 11 15 15 H 1.07998 * 119.99743 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00183 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00150 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46863 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47096 * 119.99970 * 18 16 14 21 21 H 1.48500 * 109.46942 * 239.99556 * 18 16 14 22 22 C 1.46954 * 110.88042 * 59.32472 * 12 11 10 23 23 C 1.46956 * 110.99532 * 189.99783 * 9 8 7 24 24 H 1.09001 * 109.47284 * 60.00003 * 1 2 3 25 25 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46997 * 300.00187 * 1 2 3 27 27 H 1.09000 * 109.47534 * 240.00323 * 2 1 3 28 28 H 1.09001 * 109.47284 * 119.99997 * 2 1 3 29 29 H 1.07999 * 120.00357 * 359.97438 * 6 4 3 30 30 H 1.08000 * 119.99678 * 359.97438 * 7 6 4 31 31 H 1.08997 * 109.47356 * 5.00211 * 8 7 6 32 32 H 1.09003 * 109.47008 * 244.99541 * 8 7 6 33 33 H 1.08997 * 109.49355 * 63.21813 * 10 9 8 34 34 H 1.09004 * 109.48943 * 303.15264 * 10 9 8 35 35 H 1.09002 * 109.48707 * 181.63135 * 11 10 9 36 36 H 1.09002 * 109.48655 * 61.56567 * 11 10 9 37 37 H 1.09003 * 109.47063 * 289.99903 * 13 12 11 38 38 H 1.09002 * 109.47208 * 50.00081 * 13 12 11 39 39 H 0.96999 * 120.00715 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.49355 * 60.64341 * 22 12 11 41 41 H 1.09003 * 109.49032 * 180.68883 * 22 12 11 42 42 H 1.09002 * 109.48908 * 56.84799 * 23 9 8 43 43 H 1.09002 * 109.49369 * 296.77670 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3503 1.5456 -0.0005 5 8 4.0907 0.5818 -0.0005 6 6 3.9120 2.9035 0.0000 7 6 5.2314 3.0779 -0.0010 8 6 5.8074 4.4705 -0.0011 9 7 6.7296 4.6189 1.1328 10 6 7.9082 3.7566 0.9695 11 6 8.8027 3.8804 2.2052 12 7 9.2010 5.2841 2.3797 13 6 10.1231 5.4326 3.5135 14 6 10.6991 6.8252 3.5136 15 1 10.4095 7.5293 2.7477 16 6 11.5967 7.2000 4.4908 17 7 11.9498 6.3424 5.4232 18 14 12.3101 8.9264 4.4912 19 1 11.7558 9.6912 3.3453 20 1 11.9540 9.6088 5.7610 21 1 13.7880 8.8513 4.3673 22 6 8.0223 6.1465 2.5431 23 6 7.1278 6.0227 1.3073 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2542 3.7600 0.0004 30 1 5.8893 2.2214 -0.0019 31 1 5.0003 5.1975 0.0894 32 1 6.3469 4.6405 -0.9329 33 1 8.4651 4.0655 0.0849 34 1 7.5880 2.7210 0.8546 35 1 9.6919 3.2638 2.0737 36 1 8.2546 3.5456 3.0859 37 1 9.5836 5.2626 4.4453 38 1 10.9302 4.7056 3.4231 39 1 12.5809 6.6061 6.1109 40 1 7.4654 5.8376 3.4276 41 1 8.3425 7.1821 2.6583 42 1 6.2386 6.6393 1.4389 43 1 7.6759 6.3575 0.4266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930116827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = -60.844619 kcal Electronic energy + Delta-G solvation = -21575.760581 eV Core-core repulsion = 18235.454951 eV Total energy + Delta-G solvation = -3340.305630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52025 -38.92107 -36.98620 -35.72489 -33.52064 -32.35241 -31.93097 -30.48548 -28.68150 -26.48338 -24.77517 -23.43657 -23.06856 -22.02787 -21.31887 -19.58880 -19.20366 -18.12520 -16.82763 -16.75887 -16.30876 -15.82024 -14.90112 -14.60265 -14.51004 -14.36410 -14.24450 -13.99764 -13.54123 -13.31566 -13.24942 -12.99049 -12.38372 -12.29509 -12.12862 -11.93510 -11.70704 -11.61755 -11.20976 -10.90218 -10.82263 -10.78075 -10.73849 -10.64677 -10.39424 -10.33373 -9.85950 -9.69043 -9.16954 -8.44917 -8.24521 -7.24125 -6.02942 -4.04525 0.91376 2.45005 2.77945 3.30483 3.37879 3.42275 4.05401 4.41846 4.43100 4.57974 4.63618 4.73298 4.90335 4.92469 4.98672 5.08725 5.28071 5.32137 5.32716 5.40698 5.42085 5.51827 5.59737 5.71451 5.78732 5.85809 5.95699 6.03226 6.12833 6.18683 6.20980 6.42486 6.56685 6.66460 7.09637 7.10787 7.33159 7.36340 7.57060 7.79548 8.08496 8.19897 8.54376 9.03244 9.59763 11.07956 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044351 B = 0.002447 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.179072 B =11440.829999 C =11628.463484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.499 3.501 5 O -0.516 6.516 6 C -0.201 4.201 7 C -0.026 4.026 8 C 0.071 3.929 9 N -0.536 5.536 10 C 0.055 3.945 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.193 3.807 14 C -0.507 4.507 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.067 3.933 23 C 0.059 3.941 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.031 0.969 37 H -0.008 1.008 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.030 0.970 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.143 -8.267 -12.329 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.345 3.655 5 O -0.406 6.406 6 C -0.221 4.221 7 C -0.045 4.045 8 C -0.056 4.056 9 N -0.261 5.261 10 C -0.073 4.073 11 C -0.073 4.073 12 N -0.264 5.264 13 C 0.068 3.932 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.062 4.062 23 C -0.069 4.069 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.010 0.990 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.828 -8.584 -12.162 24.795 hybrid contribution 0.475 0.628 0.179 0.807 sum -19.354 -7.956 -11.983 24.114 Atomic orbital electron populations 1.21807 0.92584 1.02985 1.03580 1.23021 0.95355 0.80192 1.02661 1.86592 1.24185 1.32254 1.84323 1.21572 0.80471 0.90871 0.72588 1.90858 1.60359 1.43014 1.46346 1.21807 0.96052 0.93487 1.10742 1.23863 0.95092 0.99422 0.86167 1.21308 0.97174 0.93410 0.93752 1.62259 1.15913 1.08623 1.39293 1.22276 0.90052 0.96479 0.98458 1.22063 0.97245 0.92212 0.95787 1.62296 1.14099 1.03948 1.46074 1.19712 0.90249 0.97817 0.85452 1.21186 1.24855 0.97398 1.11101 0.91861 1.25003 0.96618 0.97592 0.95494 1.69968 1.33978 1.34772 1.15034 0.86443 0.78846 0.84322 0.77806 1.19685 1.21115 1.21046 1.21998 0.90211 0.99560 0.94432 1.22282 0.98274 0.87247 0.99102 0.91481 0.90215 0.91383 0.91258 0.91154 0.84282 0.85319 0.89431 0.92421 0.93951 0.90996 0.90892 0.95062 0.99018 0.95195 0.92972 0.95214 0.89374 0.90913 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.36 -3.79 10.23 -40.76 -0.42 -4.21 16 4 C 0.50 5.98 7.91 34.26 0.27 6.25 16 5 O -0.52 -7.55 16.01 -19.29 -0.31 -7.86 16 6 C -0.20 -2.03 9.76 -37.85 -0.37 -2.40 16 7 C -0.03 -0.28 8.77 -36.10 -0.32 -0.60 16 8 C 0.07 0.74 5.41 -4.97 -0.03 0.72 16 9 N -0.54 -7.52 4.70 -235.90 -1.11 -8.63 16 10 C 0.06 0.82 5.44 -3.77 -0.02 0.80 16 11 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 12 N -0.54 -11.64 4.70 -235.90 -1.11 -12.75 16 13 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 14 C -0.51 -14.17 8.47 -34.44 -0.29 -14.46 16 15 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.07 1.28 5.43 -3.77 -0.02 1.26 16 23 C 0.06 0.88 5.61 -3.76 -0.02 0.85 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.14 1.10 7.87 -52.49 -0.41 0.68 16 30 H 0.13 1.48 6.33 -52.49 -0.33 1.15 16 31 H 0.09 0.78 7.70 -51.93 -0.40 0.38 16 32 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.94 6.53 -51.93 -0.34 0.60 16 35 H 0.07 1.31 8.07 -51.93 -0.42 0.90 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 38 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.80 6.79 -51.93 -0.35 1.45 16 42 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -31.92 353.20 -9.48 -41.40 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -7.25 Total: -3.98 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.33 Total: 0.19 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -1.48 Total: -47.40 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.73 Total: -12.07 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.92 -9.48 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930116827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.440 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds