Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45209 * 109.46724 * 2 1 4 4 C 1.34798 * 116.99704 * 180.02562 * 3 2 1 5 5 O 1.21535 * 120.00471 * 359.97438 * 4 3 2 6 6 C 1.46953 * 119.99712 * 180.02562 * 4 3 2 7 7 C 1.33077 * 119.99712 * 174.21961 * 6 4 3 8 8 C 1.50697 * 120.00704 * 351.72179 * 7 6 4 9 9 N 1.46901 * 109.47477 * 225.43921 * 8 7 6 10 10 C 1.46954 * 110.99875 * 46.19329 * 9 8 7 11 11 C 1.53053 * 109.36277 * 183.19157 * 10 9 8 12 12 N 1.46960 * 109.36504 * 301.60299 * 11 10 9 13 13 C 1.46901 * 111.00258 * 183.19073 * 12 11 10 14 14 C 1.50694 * 109.47229 * 169.99471 * 13 12 11 15 15 H 1.08001 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99848 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00238 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99860 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47031 * 60.00576 * 18 16 14 20 20 H 1.48500 * 109.46959 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47199 * 300.00296 * 18 16 14 22 22 C 1.46949 * 110.88103 * 59.31560 * 12 11 10 23 23 C 1.46950 * 110.99967 * 169.99607 * 9 8 7 24 24 H 1.08996 * 109.47322 * 299.99343 * 1 2 3 25 25 H 1.08999 * 109.47607 * 60.00358 * 1 2 3 26 26 H 1.09007 * 109.46720 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47543 * 240.00263 * 2 1 3 28 28 H 1.08999 * 109.47607 * 119.99642 * 2 1 3 29 29 H 1.07998 * 119.99992 * 354.21417 * 6 4 3 30 30 H 1.08006 * 119.99567 * 171.71904 * 7 6 4 31 31 H 1.09003 * 109.47525 * 105.43379 * 8 7 6 32 32 H 1.09003 * 109.46628 * 345.43369 * 8 7 6 33 33 H 1.09001 * 109.48880 * 63.22346 * 10 9 8 34 34 H 1.09002 * 109.49039 * 303.15900 * 10 9 8 35 35 H 1.08996 * 109.49043 * 181.63147 * 11 10 9 36 36 H 1.09004 * 109.49023 * 61.56621 * 11 10 9 37 37 H 1.08997 * 109.46683 * 289.99907 * 13 12 11 38 38 H 1.09001 * 109.46743 * 49.99322 * 13 12 11 39 39 H 0.96994 * 120.00392 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.48704 * 60.65287 * 22 12 11 41 41 H 1.09002 * 109.48708 * 180.71422 * 22 12 11 42 42 H 1.09002 * 109.48799 * 56.84726 * 23 9 8 43 43 H 1.08998 * 109.49501 * 296.77442 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3503 1.5457 -0.0005 5 8 4.0907 0.5820 -0.0005 6 6 3.9119 2.9037 0.0000 7 6 5.2258 3.0803 0.1155 8 6 6.1187 1.9083 0.4321 9 7 7.0757 2.2905 1.4791 10 6 6.4012 2.9985 2.5761 11 6 7.4411 3.4482 3.6051 12 7 8.1682 2.2743 4.1080 13 6 9.1252 2.6565 5.1550 14 6 9.6700 1.4160 5.8147 15 1 9.3389 0.4411 5.4885 16 6 10.5920 1.5255 6.8340 17 7 10.9957 2.7126 7.2308 18 14 11.2680 -0.0122 7.6512 19 1 11.9535 -0.8517 6.6361 20 1 12.2352 0.3742 8.7097 21 1 10.1520 -0.7816 8.2580 22 6 8.8426 1.5663 3.0110 23 6 7.8027 1.1167 1.9820 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2583 3.7584 -0.0935 30 1 5.6523 4.0636 -0.0176 31 1 6.6614 1.6120 -0.4656 32 1 5.5118 1.0733 0.7820 33 1 5.6831 2.3310 3.0525 34 1 5.8805 3.8705 2.1803 35 1 6.9400 3.9481 4.4339 36 1 8.1432 4.1371 3.1354 37 1 9.9444 3.2210 4.7098 38 1 8.6218 3.2729 5.8998 39 1 11.6440 2.7897 7.9481 40 1 9.5607 2.2338 2.5346 41 1 9.3633 0.6943 3.4068 42 1 8.3039 0.6168 1.1531 43 1 7.1007 0.4277 2.4517 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930116828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = -45.363360 kcal Electronic energy + Delta-G solvation = -22196.809045 eV Core-core repulsion = 18857.174733 eV Total energy + Delta-G solvation = -3339.634313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70546 -38.82815 -37.15800 -35.43034 -33.40218 -32.32890 -31.89247 -30.38599 -28.55160 -26.30040 -24.81762 -23.38479 -22.97762 -22.20715 -21.25361 -19.91995 -19.11558 -17.96733 -16.78956 -16.38287 -16.24067 -15.59883 -15.00966 -14.63549 -14.38867 -14.28993 -14.13115 -13.91657 -13.52421 -13.42513 -13.07672 -12.96205 -12.55403 -12.21548 -12.05740 -12.00498 -11.86215 -11.53801 -11.18323 -10.83857 -10.79708 -10.74494 -10.63756 -10.39685 -10.24431 -10.12622 -9.72477 -9.67747 -9.16096 -8.41230 -7.96505 -7.19165 -6.00373 -4.01763 0.90478 2.49821 2.72760 3.35169 3.38881 3.42084 4.13761 4.44357 4.50113 4.61495 4.66015 4.68429 4.95290 4.98206 5.17834 5.30733 5.34895 5.37568 5.43999 5.49304 5.59220 5.62151 5.64080 5.82760 5.88332 5.95763 5.98740 5.99509 6.09825 6.23233 6.44853 6.51914 6.63973 6.73244 7.21407 7.26380 7.37903 7.40963 7.59770 7.82521 8.12063 8.24243 8.58441 9.05601 9.62307 11.10503 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.003061 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.257914 B = 9144.787833 C = 9620.780133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.492 3.508 5 O -0.502 6.502 6 C -0.214 4.214 7 C -0.025 4.025 8 C 0.033 3.967 9 N -0.540 5.540 10 C 0.058 3.942 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.508 4.508 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.068 3.932 23 C 0.061 3.939 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.031 0.969 37 H -0.008 1.008 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.029 0.971 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.689 -0.618 -16.634 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.340 3.660 5 O -0.393 6.393 6 C -0.233 4.233 7 C -0.044 4.044 8 C -0.093 4.093 9 N -0.266 5.266 10 C -0.070 4.070 11 C -0.072 4.072 12 N -0.265 5.265 13 C 0.069 3.931 14 C -0.546 4.546 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.061 4.061 23 C -0.067 4.067 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.009 0.991 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.382 -0.849 -16.489 23.974 hybrid contribution 0.448 -0.734 0.508 0.999 sum -16.934 -1.583 -15.981 23.338 Atomic orbital electron populations 1.21807 0.92629 1.03001 1.03513 1.23021 0.95339 0.80164 1.02709 1.86595 1.24263 1.32309 1.84297 1.21721 0.80410 0.90949 0.72917 1.90713 1.58917 1.43591 1.46112 1.21886 0.95903 0.93639 1.11904 1.23990 0.93254 1.01125 0.86023 1.22265 0.94071 0.96229 0.96738 1.62242 1.27059 1.25831 1.11433 1.22213 0.95952 0.97465 0.91334 1.22058 0.95896 0.93228 0.96023 1.62269 1.30437 1.22939 1.10832 1.19691 0.88625 0.96396 0.88374 1.21125 1.23039 0.92972 1.17489 0.91985 1.24989 0.96560 0.96120 0.96936 1.69946 1.32366 1.22420 1.29132 0.86562 0.78699 0.83130 0.79022 1.20264 1.21368 1.20199 1.21994 0.94089 0.99541 0.90451 1.22212 0.96468 0.90843 0.97164 0.91409 0.91526 0.90211 0.91226 0.91107 0.84010 0.84176 0.89108 0.88507 0.94502 0.91268 0.91095 0.95127 0.99062 0.95268 0.92885 0.95286 0.89519 0.91092 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.53 6.20 37.16 0.23 0.76 16 3 O -0.36 -3.85 10.23 -40.76 -0.42 -4.26 16 4 C 0.49 5.84 7.78 34.26 0.27 6.11 16 5 O -0.50 -7.13 12.81 -19.29 -0.25 -7.38 16 6 C -0.21 -2.06 10.14 -37.85 -0.38 -2.45 16 7 C -0.03 -0.26 7.72 -36.10 -0.28 -0.54 16 8 C 0.03 0.43 4.89 -4.98 -0.02 0.40 16 9 N -0.54 -8.33 4.85 -235.91 -1.14 -9.48 16 10 C 0.06 0.92 5.19 -3.77 -0.02 0.90 16 11 C 0.06 1.07 5.61 -3.76 -0.02 1.05 16 12 N -0.54 -12.10 4.70 -235.91 -1.11 -13.21 16 13 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 14 C -0.51 -14.48 8.47 -34.44 -0.29 -14.77 16 15 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 18 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 23 C 0.06 1.03 5.58 -3.77 -0.02 1.01 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.17 7.99 -52.48 -0.42 0.75 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.46 4.61 -54.15 -0.25 1.21 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 38 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -31.93 347.45 -9.47 -41.40 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.20 Total: -2.85 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.30 Total: -0.04 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.52 Total: -48.97 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.66 Total: -11.64 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.93 -9.47 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930116828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.962 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds