Wall clock time and date at job start Tue Mar 31 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47399 * 2 1 4 4 C 1.34782 * 120.00079 * 270.97331 * 3 2 1 5 5 O 1.21279 * 119.99882 * 4.35597 * 4 3 2 6 6 C 1.50700 * 120.00073 * 184.36962 * 4 3 2 7 7 C 1.53183 * 109.53792 * 282.64022 * 6 4 3 8 8 C 1.53096 * 109.16085 * 183.15573 * 7 6 4 9 9 O 1.42901 * 109.41572 * 57.60329 * 8 7 6 10 10 C 1.42895 * 114.10143 * 298.84387 * 9 8 7 11 11 C 1.53090 * 109.41779 * 61.15571 * 10 9 8 12 12 C 1.46499 * 120.00110 * 90.96327 * 3 2 1 13 13 C 1.53499 * 114.20206 * 64.29242 * 12 3 2 14 14 N 1.47059 * 87.98599 * 220.14535 * 13 12 3 15 15 C 1.36942 * 136.05981 * 206.85763 * 14 13 12 16 16 H 1.07995 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00179 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47182 * 119.99934 * 19 17 15 22 22 H 1.48497 * 109.46877 * 240.00300 * 19 17 15 23 23 C 1.47065 * 87.88367 * 27.12265 * 14 13 12 24 24 H 1.08999 * 109.47100 * 60.00078 * 1 2 3 25 25 H 1.08995 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46837 * 299.99904 * 1 2 3 27 27 H 1.09002 * 109.47051 * 240.00132 * 2 1 3 28 28 H 1.08999 * 109.47100 * 119.99922 * 2 1 3 29 29 H 1.08998 * 109.54240 * 42.90195 * 6 4 3 30 30 H 1.09004 * 109.51945 * 303.05699 * 7 6 4 31 31 H 1.09000 * 109.52280 * 63.24592 * 7 6 4 32 32 H 1.09001 * 109.47832 * 297.62294 * 8 7 6 33 33 H 1.08993 * 109.48021 * 177.59308 * 8 7 6 34 34 H 1.09007 * 109.48164 * 301.17520 * 10 9 8 35 35 H 1.09001 * 109.49649 * 181.14566 * 10 9 8 36 36 H 1.08998 * 109.52615 * 182.48290 * 11 10 9 37 37 H 1.09010 * 109.51972 * 62.29993 * 11 10 9 38 38 H 1.09001 * 113.28380 * 197.35665 * 12 3 2 39 39 H 1.09008 * 113.46561 * 105.36688 * 13 12 3 40 40 H 1.08997 * 113.52268 * 334.93876 * 13 12 3 41 41 H 0.96998 * 119.99925 * 180.02562 * 18 17 15 42 42 H 1.09005 * 113.46820 * 87.66154 * 23 14 13 43 43 H 1.09006 * 113.46444 * 218.09378 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2244 2.0231 -1.1671 5 8 1.9311 1.4864 -2.2143 6 6 2.8194 3.4077 -1.1706 7 6 1.7458 4.4277 -0.7789 8 6 2.3377 5.8372 -0.8617 9 8 2.8272 6.0699 -2.1840 10 6 3.8663 5.1759 -2.5873 11 6 3.3359 3.7399 -2.5739 12 6 2.2828 2.0647 1.2685 13 6 3.4149 1.4402 2.0958 14 7 2.5994 1.6789 3.2961 15 6 2.8419 1.8856 4.6279 16 1 3.8569 1.8953 4.9968 17 6 1.7832 2.0827 5.5038 18 7 0.5462 2.0703 5.0543 19 14 2.1141 2.3654 7.3204 20 1 3.5780 2.3325 7.5678 21 1 1.5733 3.6888 7.7220 22 1 1.4541 1.2989 8.1155 23 6 1.4084 1.5911 2.4378 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.6436 3.4522 -0.4587 30 1 0.9003 4.3470 -1.4621 31 1 1.4120 4.2320 0.2401 32 1 3.1574 5.9296 -0.1492 33 1 1.5662 6.5699 -0.6254 34 1 4.7061 5.2596 -1.8973 35 1 4.1962 5.4321 -3.5941 36 1 4.1392 3.0523 -2.8386 37 1 2.5225 3.6453 -3.2933 38 1 2.3473 3.1482 1.1689 39 1 4.3378 2.0199 2.0758 40 1 3.5766 0.3833 1.8839 41 1 -0.1936 2.2084 5.6663 42 1 1.0348 0.5743 2.3165 43 1 0.6251 2.2990 2.7087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949559793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:46 Heat of formation + Delta-G solvation = -25.597898 kcal Electronic energy + Delta-G solvation = -23662.957126 eV Core-core repulsion = 20324.179908 eV Total energy + Delta-G solvation = -3338.777218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53091 -38.90312 -37.84399 -34.63009 -33.79840 -32.11799 -31.22929 -30.37268 -27.62416 -25.91594 -24.75799 -23.82583 -23.41929 -22.85001 -20.66596 -19.87362 -18.41974 -17.45299 -16.67936 -16.25270 -16.06197 -15.61439 -15.09272 -14.90929 -14.73393 -14.23250 -13.98131 -13.55542 -13.47851 -13.21194 -12.65539 -12.49340 -12.40485 -12.03285 -11.73040 -11.67169 -11.51103 -11.39675 -11.15391 -10.99177 -10.87184 -10.72720 -10.65679 -10.50525 -10.30045 -10.14890 -9.83046 -9.55507 -9.27646 -8.92802 -8.18600 -7.03012 -5.89968 -3.23536 2.81890 3.22938 3.32134 3.38064 3.39941 3.81529 4.33680 4.55400 4.66652 4.74511 4.92891 5.12552 5.14295 5.17867 5.25333 5.36949 5.39807 5.41693 5.54669 5.56840 5.61741 5.62971 5.67858 5.72192 5.77690 5.88461 5.98281 6.09621 6.15047 6.20197 6.25328 6.31688 6.40355 6.55887 6.84107 7.03679 7.09697 7.11579 7.38299 7.76632 7.83610 8.42877 8.90595 9.57012 10.47086 11.27540 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.005086 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.734904 B = 5504.514812 C = 6454.945400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.591 5.591 4 C 0.521 3.479 5 O -0.552 6.552 6 C -0.109 4.109 7 C -0.150 4.150 8 C 0.063 3.937 9 O -0.384 6.384 10 C 0.061 3.939 11 C -0.135 4.135 12 C 0.069 3.931 13 C 0.105 3.895 14 N -0.604 5.604 15 C -0.220 4.220 16 H 0.084 0.916 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.914 3.086 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.150 3.850 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.043 0.957 40 H 0.036 0.964 41 H 0.255 0.745 42 H 0.037 0.963 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.861 3.244 -12.157 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.322 5.322 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.130 4.130 7 C -0.188 4.188 8 C -0.013 4.013 9 O -0.303 6.303 10 C -0.016 4.016 11 C -0.173 4.173 12 C -0.035 4.035 13 C -0.023 4.023 14 N -0.330 5.330 15 C -0.347 4.347 16 H 0.102 0.898 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.024 3.976 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.554 3.155 -12.438 13.315 hybrid contribution 0.186 -0.371 1.408 1.468 sum 3.740 2.784 -11.029 11.974 Atomic orbital electron populations 1.22180 0.95877 1.01885 1.02689 1.21359 0.94636 0.82442 1.02534 1.48067 1.64241 1.13945 1.05975 1.20489 0.77952 0.87388 0.83310 1.90637 1.52422 1.68375 1.31556 1.21348 0.99465 0.92744 0.99460 1.22278 0.98276 0.94661 1.03595 1.22588 0.98638 0.95961 0.84154 1.87918 1.54655 1.55729 1.32016 1.22602 0.89608 0.88750 1.00592 1.22022 1.02301 0.96909 0.96083 1.23968 1.00742 0.97342 0.81463 1.22841 0.94724 0.97554 0.87133 1.45329 1.02353 1.82707 1.02580 1.18951 0.93020 1.42479 0.80233 0.89834 1.24813 0.95122 1.01937 0.98301 1.69823 0.97554 1.55200 1.33892 0.86014 0.77514 0.77551 0.84483 1.20359 1.21540 1.21635 1.22500 0.92240 0.98890 0.84010 0.92665 0.92135 0.91434 0.90713 0.90155 0.88680 0.90438 0.89347 0.92681 0.88412 0.93108 0.88758 0.90651 0.89958 0.86623 0.93905 0.94675 0.93502 0.94566 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.94 37.16 0.37 -2.11 16 2 C 0.11 1.73 5.22 -4.04 -0.02 1.71 16 3 N -0.59 -9.41 2.71 -165.89 -0.45 -9.86 16 4 C 0.52 8.24 6.88 -10.98 -0.08 8.17 16 5 O -0.55 -10.11 15.59 5.56 0.09 -10.02 16 6 C -0.11 -1.42 1.75 -91.59 -0.16 -1.58 16 7 C -0.15 -1.87 5.11 -26.59 -0.14 -2.00 16 8 C 0.06 0.71 6.84 37.21 0.25 0.96 16 9 O -0.38 -4.74 10.76 -35.23 -0.38 -5.12 16 10 C 0.06 0.63 6.84 37.20 0.25 0.89 16 11 C -0.14 -1.60 4.91 -26.59 -0.13 -1.73 16 12 C 0.07 1.20 3.86 -67.82 -0.26 0.94 16 13 C 0.11 2.01 8.26 -8.52 -0.07 1.94 16 14 N -0.60 -14.51 3.78 -184.82 -0.70 -15.21 16 15 C -0.22 -5.85 10.75 -15.06 -0.16 -6.01 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 18 N -0.92 -26.00 11.51 55.49 0.64 -25.36 16 19 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.15 3.25 6.03 -8.52 -0.05 3.19 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.08 6.47 -51.93 -0.34 0.75 16 27 H 0.07 1.13 7.52 -51.93 -0.39 0.74 16 28 H 0.08 1.25 6.18 -51.93 -0.32 0.93 16 29 H 0.10 1.17 7.39 -51.93 -0.38 0.79 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.15 5.99 -51.93 -0.31 0.84 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.10 7.82 -51.92 -0.41 0.69 16 38 H 0.12 1.89 4.61 -51.93 -0.24 1.65 16 39 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.04 0.67 7.29 -51.93 -0.38 0.29 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.04 0.80 5.34 -51.93 -0.28 0.52 16 43 H 0.08 1.83 7.12 -51.93 -0.37 1.46 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -30.56 332.26 -7.87 -38.43 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.76 Total: 1.78 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.29 Total: 4.14 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.51 Total: -50.44 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.29 Total: -15.14 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.56 -7.87 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949559793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.833 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds