Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47399 * 2 1 4 4 C 1.34782 * 120.00079 * 270.97331 * 3 2 1 5 5 O 1.21279 * 119.99882 * 4.35597 * 4 3 2 6 6 C 1.50700 * 120.00073 * 184.36962 * 4 3 2 7 7 C 1.53183 * 109.53792 * 282.64022 * 6 4 3 8 8 C 1.53096 * 109.16085 * 183.15573 * 7 6 4 9 9 O 1.42901 * 109.41572 * 57.60329 * 8 7 6 10 10 C 1.42895 * 114.10143 * 298.84387 * 9 8 7 11 11 C 1.53090 * 109.41779 * 61.15571 * 10 9 8 12 12 C 1.46499 * 120.00110 * 90.96327 * 3 2 1 13 13 C 1.53499 * 114.20206 * 64.29242 * 12 3 2 14 14 N 1.47059 * 87.98599 * 220.14535 * 13 12 3 15 15 C 1.36942 * 136.05981 * 206.85763 * 14 13 12 16 16 H 1.07995 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00179 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47182 * 119.99934 * 19 17 15 22 22 H 1.48497 * 109.46877 * 240.00300 * 19 17 15 23 23 C 1.47065 * 87.88367 * 27.12265 * 14 13 12 24 24 H 1.08999 * 109.47100 * 60.00078 * 1 2 3 25 25 H 1.08995 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46837 * 299.99904 * 1 2 3 27 27 H 1.09002 * 109.47051 * 240.00132 * 2 1 3 28 28 H 1.08999 * 109.47100 * 119.99922 * 2 1 3 29 29 H 1.08998 * 109.54240 * 42.90195 * 6 4 3 30 30 H 1.09004 * 109.51945 * 303.05699 * 7 6 4 31 31 H 1.09000 * 109.52280 * 63.24592 * 7 6 4 32 32 H 1.09001 * 109.47832 * 297.62294 * 8 7 6 33 33 H 1.08993 * 109.48021 * 177.59308 * 8 7 6 34 34 H 1.09007 * 109.48164 * 301.17520 * 10 9 8 35 35 H 1.09001 * 109.49649 * 181.14566 * 10 9 8 36 36 H 1.08998 * 109.52615 * 182.48290 * 11 10 9 37 37 H 1.09010 * 109.51972 * 62.29993 * 11 10 9 38 38 H 1.09001 * 113.28380 * 197.35665 * 12 3 2 39 39 H 1.09008 * 113.46561 * 105.36688 * 13 12 3 40 40 H 1.08997 * 113.52268 * 334.93876 * 13 12 3 41 41 H 0.96998 * 119.99925 * 180.02562 * 18 17 15 42 42 H 1.09005 * 113.46820 * 87.66154 * 23 14 13 43 43 H 1.09006 * 113.46444 * 218.09378 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2244 2.0231 -1.1671 5 8 1.9311 1.4864 -2.2143 6 6 2.8194 3.4077 -1.1706 7 6 1.7458 4.4277 -0.7789 8 6 2.3377 5.8372 -0.8617 9 8 2.8272 6.0699 -2.1840 10 6 3.8663 5.1759 -2.5873 11 6 3.3359 3.7399 -2.5739 12 6 2.2828 2.0647 1.2685 13 6 3.4149 1.4402 2.0958 14 7 2.5994 1.6789 3.2961 15 6 2.8419 1.8856 4.6279 16 1 3.8569 1.8953 4.9968 17 6 1.7832 2.0827 5.5038 18 7 0.5462 2.0703 5.0543 19 14 2.1141 2.3654 7.3204 20 1 3.5780 2.3325 7.5678 21 1 1.5733 3.6888 7.7220 22 1 1.4541 1.2989 8.1155 23 6 1.4084 1.5911 2.4378 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.6436 3.4522 -0.4587 30 1 0.9003 4.3470 -1.4621 31 1 1.4120 4.2320 0.2401 32 1 3.1574 5.9296 -0.1492 33 1 1.5662 6.5699 -0.6254 34 1 4.7061 5.2596 -1.8973 35 1 4.1962 5.4321 -3.5941 36 1 4.1392 3.0523 -2.8386 37 1 2.5225 3.6453 -3.2933 38 1 2.3473 3.1482 1.1689 39 1 4.3378 2.0199 2.0758 40 1 3.5766 0.3833 1.8839 41 1 -0.1936 2.2084 5.6663 42 1 1.0348 0.5743 2.3165 43 1 0.6251 2.2990 2.7087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949559793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = -44.753707 kcal Electronic energy + Delta-G solvation = -23663.787784 eV Core-core repulsion = 20324.179908 eV Total energy + Delta-G solvation = -3339.607876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80481 -40.09687 -39.21932 -36.09624 -34.86595 -34.01984 -32.16769 -31.62893 -29.46707 -26.96332 -26.41513 -25.33300 -24.60792 -24.02120 -21.94922 -21.22226 -19.73734 -18.95470 -18.31240 -17.47850 -16.96040 -16.86704 -16.65795 -16.33337 -15.75959 -15.66290 -15.44011 -14.90491 -14.61993 -14.38551 -14.26957 -13.84621 -13.51992 -13.46134 -13.23783 -13.05446 -12.94144 -12.72944 -12.60609 -12.48731 -12.20235 -12.08134 -11.96406 -11.91260 -11.68864 -11.46461 -11.33345 -10.93257 -10.85061 -10.38269 -9.60132 -8.95112 -7.92584 -5.26608 1.48558 1.48982 1.53744 1.59121 1.92956 2.48611 2.97574 3.28955 3.31786 3.55517 3.68623 3.74171 3.76420 3.99638 4.05459 4.16553 4.26623 4.31765 4.35364 4.37414 4.50934 4.53839 4.61362 4.68597 4.76757 4.79821 4.83552 4.84179 4.85579 4.95998 5.06269 5.10310 5.21354 5.26574 5.27969 5.38180 5.47232 5.60879 5.88725 6.27306 6.42647 6.88982 7.13148 7.57922 8.55143 9.24988 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.005086 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.734904 B = 5504.514812 C = 6454.945400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.111 3.889 3 N -0.591 5.591 4 C 0.520 3.480 5 O -0.575 6.575 6 C -0.107 4.107 7 C -0.146 4.146 8 C 0.065 3.935 9 O -0.400 6.400 10 C 0.061 3.939 11 C -0.130 4.130 12 C 0.103 3.897 13 C 0.108 3.892 14 N -0.633 5.633 15 C -0.226 4.226 16 H 0.089 0.911 17 C -0.061 4.061 18 N -0.951 5.951 19 Si 0.977 3.023 20 H -0.264 1.264 21 H -0.291 1.291 22 H -0.296 1.296 23 C 0.151 3.849 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.249 0.751 42 H 0.031 0.969 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 3.858 -12.568 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.310 3.690 5 O -0.455 6.455 6 C -0.128 4.128 7 C -0.184 4.184 8 C -0.012 4.012 9 O -0.319 6.319 10 C -0.015 4.015 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.019 4.019 14 N -0.359 5.359 15 C -0.354 4.354 16 H 0.107 0.893 17 C -0.255 4.255 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.188 1.188 21 H -0.218 1.218 22 H -0.223 1.223 23 C 0.024 3.976 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.266 3.764 -12.878 14.414 hybrid contribution -0.335 -0.625 1.457 1.621 sum 4.932 3.138 -11.421 12.830 Atomic orbital electron populations 1.22095 0.95545 1.02847 1.01339 1.21415 0.94891 0.82245 1.02620 1.48055 1.64325 1.14171 1.05613 1.20985 0.77267 0.88188 0.82559 1.90629 1.53453 1.69209 1.32252 1.21420 0.99784 0.90836 1.00796 1.22229 0.97851 0.95622 1.02668 1.22646 0.99333 0.95058 0.84161 1.87908 1.55310 1.56205 1.32461 1.22742 0.89425 0.87211 1.02133 1.21992 1.01847 0.98356 0.94625 1.23499 0.97940 0.97855 0.80841 1.22952 0.95465 0.98299 0.85165 1.45610 1.04392 1.82941 1.02956 1.19318 0.93255 1.41111 0.81706 0.89325 1.25592 0.95030 1.02647 1.02184 1.70000 0.98204 1.56904 1.34810 0.85025 0.77934 0.76754 0.79701 1.18802 1.21787 1.22286 1.22415 0.91587 0.97874 0.85718 0.93361 0.90140 0.93199 0.90138 0.90400 0.87290 0.91625 0.90114 0.91477 0.87388 0.91456 0.86987 0.89946 0.91859 0.85218 0.91976 0.93966 0.94187 0.95165 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 9.94 71.98 0.72 -3.96 16 2 C 0.11 3.30 5.22 86.38 0.45 3.75 16 3 N -0.59 -18.19 2.71 -797.14 -2.16 -20.35 16 4 C 0.52 15.82 6.88 87.66 0.60 16.42 16 5 O -0.58 -20.59 15.59 -3.03 -0.05 -20.63 16 6 C -0.11 -2.59 1.75 -11.42 -0.02 -2.61 16 7 C -0.15 -3.43 5.11 30.69 0.16 -3.27 16 8 C 0.06 1.31 6.84 72.01 0.49 1.80 16 9 O -0.40 -8.95 10.76 -148.98 -1.60 -10.55 16 10 C 0.06 1.10 6.84 72.01 0.49 1.59 16 11 C -0.13 -2.83 4.91 30.68 0.15 -2.68 16 12 C 0.10 3.46 3.86 45.46 0.18 3.64 16 13 C 0.11 3.93 8.26 83.17 0.69 4.62 16 14 N -0.63 -30.12 3.78 -738.66 -2.79 -32.91 16 15 C -0.23 -11.92 10.75 84.03 0.90 -11.02 16 16 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 17 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 18 N -0.95 -54.89 11.51 21.65 0.25 -54.64 16 19 Si 0.98 43.67 29.55 68.60 2.03 45.70 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 23 C 0.15 6.57 6.03 83.17 0.50 7.07 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.63 6.47 -2.39 -0.02 1.61 16 27 H 0.08 2.34 7.52 -2.39 -0.02 2.32 16 28 H 0.08 2.37 6.18 -2.39 -0.01 2.35 16 29 H 0.11 2.36 7.39 -2.39 -0.02 2.34 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.02 5.99 -2.39 -0.01 2.00 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.63 7.82 -2.38 -0.02 1.61 16 38 H 0.13 4.03 4.61 -2.39 -0.01 4.02 16 39 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.04 1.52 7.29 -2.39 -0.02 1.50 16 41 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.03 1.36 5.34 -2.38 -0.01 1.35 16 43 H 0.04 2.15 7.12 -2.38 -0.02 2.13 16 Total: -1.00 -65.15 332.26 2.44 -62.70 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 1.00 Total: 18.16 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.78 Total: 12.52 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.70 Total: -107.90 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.65 Total: -31.19 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.15 2.44 -62.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949559793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.950 kcal (2) G-P(sol) polarization free energy of solvation -65.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds