Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42902 * 109.46853 * 2 1 4 4 C 1.42903 * 114.00254 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.55506 * 355.68760 * 4 3 2 6 6 C 1.53069 * 117.51537 * 141.38778 * 4 3 2 7 7 C 1.52993 * 117.50004 * 209.99755 * 4 3 2 8 8 H 1.08998 * 117.50110 * 144.99566 * 7 4 3 9 9 C 1.50706 * 117.50081 * 0.02562 * 7 4 3 10 10 O 1.21277 * 119.99668 * 0.08192 * 9 7 4 11 11 N 1.34778 * 119.99906 * 180.08799 * 9 7 4 12 12 C 1.46496 * 120.00253 * 359.97438 * 11 9 7 13 13 C 1.53002 * 109.46603 * 90.00144 * 12 11 9 14 14 C 1.46506 * 119.99420 * 179.97438 * 11 9 7 15 15 C 1.53947 * 113.73806 * 218.73929 * 14 11 9 16 16 N 1.47816 * 86.03611 * 222.08679 * 15 14 11 17 17 C 1.36937 * 134.45716 * 204.64488 * 16 15 14 18 18 H 1.08000 * 119.99866 * 179.86271 * 17 16 15 19 19 C 1.38804 * 119.99846 * 359.86645 * 17 16 15 20 20 N 1.31621 * 120.00566 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99816 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47080 * 60.00023 * 21 19 17 23 23 H 1.48507 * 109.46789 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47108 * 299.99989 * 21 19 17 25 25 C 1.47587 * 91.05071 * 24.54928 * 16 15 14 26 26 H 1.09000 * 109.47461 * 299.99917 * 1 2 3 27 27 H 1.09008 * 109.47554 * 60.00392 * 1 2 3 28 28 H 1.09008 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47461 * 240.00082 * 2 1 3 30 30 H 1.08999 * 109.47003 * 119.99475 * 2 1 3 31 31 H 1.09000 * 117.51640 * 0.02562 * 6 4 3 32 32 H 1.08999 * 117.49573 * 214.96329 * 6 4 3 33 33 H 1.09001 * 109.47199 * 209.99880 * 12 11 9 34 34 H 1.09001 * 109.47282 * 330.00517 * 12 11 9 35 35 H 1.09010 * 109.46894 * 179.97438 * 13 12 11 36 36 H 1.09002 * 109.47653 * 299.99769 * 13 12 11 37 37 H 1.09006 * 109.47439 * 60.00362 * 13 12 11 38 38 H 1.09000 * 112.94587 * 350.33035 * 14 11 9 39 39 H 1.09004 * 113.76947 * 336.34663 * 15 14 11 40 40 H 1.08997 * 113.76857 * 107.74703 * 15 14 11 41 41 H 0.96996 * 120.00757 * 180.02562 * 20 19 17 42 42 H 1.08997 * 113.76803 * 221.15248 * 25 16 15 43 43 H 1.09000 * 113.86858 * 89.76295 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.9770 0.5200 0.0749 6 6 4.0522 2.5735 -0.8465 7 6 4.0418 2.6878 0.6791 8 1 4.9899 2.5551 1.2003 9 6 3.0954 3.6851 1.2963 10 8 1.8983 3.4973 1.2447 11 7 3.5793 4.7857 1.9055 12 6 5.0252 5.0122 1.9683 13 6 5.4703 5.8087 0.7401 14 6 2.6591 5.7553 2.5050 15 6 3.0884 7.2206 2.3084 16 7 2.6866 7.4199 3.7169 17 6 2.2799 8.4996 4.4546 18 1 2.0337 8.3780 5.4991 19 6 2.1840 9.7501 3.8599 20 7 2.4835 9.8982 2.5868 21 14 1.6286 11.2227 4.8661 22 1 2.5693 11.4337 5.9955 23 1 1.6095 12.4321 4.0044 24 1 0.2648 10.9729 5.3979 25 6 2.8972 5.9885 4.0080 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5137 0.8900 31 1 3.3745 3.2201 -1.4040 32 1 5.0071 2.3652 -1.3291 33 1 5.2663 5.5726 2.8716 34 1 5.5429 4.0532 1.9865 35 1 6.5462 5.9777 0.7869 36 1 5.2292 5.2484 -0.1633 37 1 4.9527 6.7679 0.7218 38 1 1.6164 5.5656 2.2500 39 1 4.1572 7.3457 2.1347 40 1 2.4731 7.7665 1.5933 41 1 2.4169 10.7721 2.1713 42 1 2.1294 5.5526 4.6472 43 1 3.9091 5.7491 4.3348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949714718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = 15.607401 kcal Electronic energy + Delta-G solvation = -22973.746210 eV Core-core repulsion = 19636.755789 eV Total energy + Delta-G solvation = -3336.990422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.08138 -38.49845 -37.19422 -35.07489 -34.76099 -32.01235 -30.77908 -30.04271 -27.62024 -24.82882 -24.72411 -23.22091 -22.92132 -22.40889 -21.99860 -19.39885 -18.26106 -17.69853 -16.83748 -16.29458 -15.57250 -15.55072 -15.28979 -14.75089 -14.35022 -13.89701 -13.79351 -13.41801 -12.97200 -12.72676 -12.65609 -12.45239 -12.32454 -12.17098 -12.06294 -11.52503 -11.48535 -11.24268 -11.11885 -11.03888 -10.83130 -10.78879 -10.56121 -10.42936 -10.17731 -10.03797 -9.49709 -9.29344 -9.02531 -8.76378 -8.00649 -6.86604 -5.75475 -3.07924 2.84582 3.32436 3.42229 3.45548 3.46706 3.48548 3.89002 4.47817 4.58335 4.72899 4.86702 4.97886 5.01360 5.11164 5.24429 5.26594 5.28583 5.33620 5.44231 5.52043 5.55245 5.64405 5.69784 5.77352 5.85439 5.92387 5.96207 6.08108 6.11079 6.16557 6.28347 6.45578 6.54541 6.67850 6.96184 7.24168 7.26015 7.44816 7.56219 7.94214 7.98797 8.70505 9.05570 9.71678 10.59905 11.41668 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025981 B = 0.003854 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.435964 B = 7263.748981 C = 7880.528706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.046 3.954 5 H 0.114 0.886 6 C -0.160 4.160 7 C -0.192 4.192 8 H 0.126 0.874 9 C 0.538 3.462 10 O -0.520 6.520 11 N -0.596 5.596 12 C 0.107 3.893 13 C -0.176 4.176 14 C 0.093 3.907 15 C 0.154 3.846 16 N -0.607 5.607 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.108 3.892 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 -18.833 -6.918 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.239 6.239 4 C -0.013 4.013 5 H 0.131 0.869 6 C -0.198 4.198 7 C -0.213 4.213 8 H 0.143 0.857 9 C 0.324 3.676 10 O -0.395 6.395 11 N -0.329 5.329 12 C -0.016 4.016 13 C -0.234 4.234 14 C -0.011 4.011 15 C 0.028 3.972 16 N -0.333 5.333 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.019 4.019 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.472 -18.410 -6.881 20.402 hybrid contribution 0.255 0.775 0.632 1.032 sum 5.728 -17.635 -6.249 19.567 Atomic orbital electron populations 1.21704 0.93650 1.01734 1.03629 1.22516 0.95904 0.84193 0.99468 1.88211 1.17047 1.25098 1.93562 1.22550 0.83591 0.92868 1.02295 0.86868 1.23398 1.02759 1.02395 0.91238 1.22845 1.01341 1.00063 0.97078 0.85666 1.19458 0.88353 0.81390 0.78370 1.90730 1.15489 1.75395 1.57898 1.48115 1.06877 1.22012 1.55939 1.21485 0.80531 1.00011 0.99588 1.22373 1.01132 1.02041 0.97894 1.23939 0.94644 0.88963 0.93508 1.22821 0.97751 0.88121 0.88544 1.45706 1.76872 1.03011 1.07746 1.18948 1.37696 0.85420 0.92968 0.90183 1.24786 1.01830 0.97394 0.96315 1.69805 1.53904 1.22921 1.10124 0.86178 0.78574 0.82035 0.78834 1.21193 1.21539 1.21030 1.22969 0.97844 0.86584 0.94544 0.91466 0.91889 0.91431 0.93728 0.93583 0.87648 0.87418 0.90027 0.91180 0.92130 0.92733 0.90689 0.86893 0.94363 0.90766 0.93561 0.93670 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.15 0.38 -1.14 16 2 C 0.06 0.59 6.53 37.15 0.24 0.83 16 3 O -0.32 -4.66 8.48 -57.36 -0.49 -5.14 16 4 C 0.05 0.53 6.41 -26.70 -0.17 0.36 16 5 H 0.11 0.90 7.93 -51.93 -0.41 0.49 16 6 C -0.16 -1.69 10.19 -26.70 -0.27 -1.96 16 7 C -0.19 -2.35 5.28 -91.77 -0.48 -2.84 16 8 H 0.13 1.19 6.44 -51.93 -0.33 0.86 16 9 C 0.54 9.23 7.46 -10.98 -0.08 9.15 16 10 O -0.52 -11.02 14.40 -16.57 -0.24 -11.25 16 11 N -0.60 -10.17 2.70 -167.89 -0.45 -10.63 16 12 C 0.11 1.46 5.11 -4.04 -0.02 1.44 16 13 C -0.18 -2.30 9.92 37.16 0.37 -1.93 16 14 C 0.09 1.94 4.40 -70.14 -0.31 1.64 16 15 C 0.15 3.67 6.42 -2.84 -0.02 3.65 16 16 N -0.61 -15.97 3.70 -177.86 -0.66 -16.63 16 17 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.51 11.39 55.49 0.63 -26.88 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.11 2.33 8.46 -2.96 -0.03 2.31 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.21 6.35 -51.93 -0.33 0.88 16 34 H 0.07 0.74 6.00 -51.93 -0.31 0.43 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.20 5.74 -51.93 -0.30 0.91 16 38 H 0.11 2.61 7.22 -51.93 -0.37 2.24 16 39 H 0.04 0.89 4.97 -51.93 -0.26 0.63 16 40 H 0.07 2.01 7.16 -51.93 -0.37 1.64 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.68 6.84 -51.93 -0.36 0.33 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -34.25 344.41 -8.50 -42.75 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.82 Total: 0.53 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -0.65 Total: 4.69 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.48 Total: -54.13 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.72 Total: -16.40 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.25 -8.50 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949714718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.361 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds