Wall clock time and date at job start Tue Mar 31 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47144 * 2 1 4 4 C 1.42905 * 114.00019 * 180.02562 * 3 2 1 5 5 H 1.08998 * 115.55701 * 4.30629 * 4 3 2 6 6 C 1.53076 * 117.51043 * 218.61141 * 4 3 2 7 7 C 1.52993 * 117.50150 * 150.00031 * 4 3 2 8 8 H 1.09005 * 117.50032 * 214.99938 * 7 4 3 9 9 C 1.50697 * 117.50087 * 359.97438 * 7 4 3 10 10 O 1.21287 * 119.99659 * 359.91242 * 9 7 4 11 11 N 1.34771 * 120.00420 * 179.91561 * 9 7 4 12 12 C 1.46506 * 120.00057 * 359.72174 * 11 9 7 13 13 C 1.53001 * 109.47056 * 277.64963 * 12 11 9 14 14 C 1.46498 * 120.00425 * 180.02562 * 11 9 7 15 15 C 1.53950 * 113.74115 * 222.89882 * 14 11 9 16 16 N 1.47817 * 86.03490 * 222.07832 * 15 14 11 17 17 C 1.36935 * 134.45698 * 204.63986 * 16 15 14 18 18 H 1.08006 * 119.99758 * 181.23839 * 17 16 15 19 19 C 1.38808 * 120.00228 * 1.24301 * 17 16 15 20 20 N 1.31620 * 119.99860 * 352.24097 * 19 17 16 21 21 Si 1.86799 * 120.00156 * 172.23377 * 19 17 16 22 22 H 1.48503 * 109.47018 * 94.96068 * 21 19 17 23 23 H 1.48506 * 109.47172 * 214.95550 * 21 19 17 24 24 H 1.48495 * 109.47107 * 334.95920 * 21 19 17 25 25 C 1.47582 * 91.04985 * 24.54848 * 16 15 14 26 26 H 1.09002 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47152 * 300.00780 * 1 2 3 28 28 H 1.09008 * 109.46696 * 60.00164 * 1 2 3 29 29 H 1.09001 * 109.47093 * 240.00005 * 2 1 3 30 30 H 1.09000 * 109.46427 * 119.99655 * 2 1 3 31 31 H 1.08998 * 117.49130 * 145.03453 * 6 4 3 32 32 H 1.08994 * 117.51655 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46287 * 37.64450 * 12 11 9 34 34 H 1.08993 * 109.47180 * 157.64223 * 12 11 9 35 35 H 1.08993 * 109.47695 * 64.24059 * 13 12 11 36 36 H 1.09001 * 109.47078 * 184.24580 * 13 12 11 37 37 H 1.09006 * 109.46878 * 304.23922 * 13 12 11 38 38 H 1.08998 * 112.94436 * 354.48479 * 14 11 9 39 39 H 1.08997 * 113.77051 * 336.34169 * 15 14 11 40 40 H 1.09000 * 113.77140 * 107.74338 * 15 14 11 41 41 H 0.96998 * 120.00254 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.76814 * 221.14826 * 25 16 15 43 43 H 1.08996 * 113.76983 * 89.75466 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5197 -0.0748 6 6 4.0524 2.5733 0.8466 7 6 4.0421 2.6875 -0.6792 8 1 4.9903 2.5547 -1.2002 9 6 3.0959 3.6848 -1.2964 10 8 1.8987 3.4971 -1.2448 11 7 3.5798 4.7852 -1.9057 12 6 5.0256 5.0150 -1.9627 13 6 5.4940 5.6449 -0.6494 14 6 2.6598 5.7550 -2.5052 15 6 3.1116 6.2668 -3.8851 16 7 2.6832 7.6016 -3.4162 17 6 2.2750 8.7512 -4.0382 18 1 2.0270 9.6237 -3.4519 19 6 2.1799 8.7952 -5.4224 20 7 2.6251 7.7892 -6.1449 21 14 1.4200 10.2822 -6.2595 22 1 2.4931 11.2289 -6.6565 23 1 0.6753 9.8436 -7.4672 24 1 0.4877 10.9562 -5.3206 25 6 2.8697 7.1972 -2.0092 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 5.0072 2.3649 1.3292 32 1 3.3747 3.2199 1.4039 33 1 5.5386 4.0652 -2.1135 34 1 5.2543 5.6869 -2.7899 35 1 5.3341 4.9420 0.1681 36 1 6.5549 5.8851 -0.7197 37 1 4.9268 6.5565 -0.4610 38 1 1.6204 5.4282 -2.4772 39 1 4.1852 6.1844 -4.0543 40 1 2.5181 5.8795 -4.7132 41 1 2.5590 7.8201 -7.1122 42 1 2.0834 7.5513 -1.3424 43 1 3.8720 7.3885 -1.6262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949714719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:00 Heat of formation + Delta-G solvation = 15.391319 kcal Electronic energy + Delta-G solvation = -22961.611821 eV Core-core repulsion = 19624.612029 eV Total energy + Delta-G solvation = -3336.999792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09509 -38.49935 -37.19825 -35.09525 -34.76629 -32.01526 -30.77296 -30.07930 -27.58588 -24.92465 -24.74792 -23.23495 -22.91782 -22.42319 -21.98394 -19.40789 -18.26681 -17.68329 -16.88815 -16.30173 -15.57120 -15.51322 -15.21209 -14.85402 -14.34088 -13.92144 -13.78024 -13.44196 -12.99624 -12.78723 -12.67443 -12.46692 -12.35307 -12.18018 -12.13753 -11.63484 -11.53818 -11.23606 -11.05928 -11.04098 -10.86477 -10.75075 -10.62922 -10.38527 -10.18115 -10.04419 -9.52254 -9.30833 -9.03076 -8.71600 -8.01126 -6.88354 -5.77370 -3.07734 2.83907 3.31828 3.41450 3.46000 3.47764 3.48976 3.88183 4.47539 4.57863 4.72470 4.86449 4.98624 5.01546 5.11508 5.25868 5.27159 5.28904 5.31386 5.38714 5.48388 5.52696 5.61830 5.67367 5.75693 5.85920 5.90227 5.92825 5.99707 6.08327 6.11575 6.25900 6.40855 6.56103 6.69060 6.89584 7.23318 7.25794 7.43810 7.54465 7.93766 7.97614 8.70177 9.04594 9.71208 10.59349 11.40647 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.003909 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.824231 B = 7161.873254 C = 7900.457982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.047 3.953 5 H 0.114 0.886 6 C -0.161 4.161 7 C -0.191 4.191 8 H 0.126 0.874 9 C 0.538 3.462 10 O -0.520 6.520 11 N -0.596 5.596 12 C 0.102 3.898 13 C -0.173 4.173 14 C 0.093 3.907 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.223 4.223 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.290 1.290 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.105 3.895 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.044 0.956 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -15.090 13.455 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.239 6.239 4 C -0.013 4.013 5 H 0.131 0.869 6 C -0.199 4.199 7 C -0.212 4.212 8 H 0.144 0.856 9 C 0.325 3.675 10 O -0.395 6.395 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.231 4.231 14 C -0.010 4.010 15 C 0.031 3.969 16 N -0.333 5.333 17 C -0.350 4.350 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.022 4.022 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.121 -14.815 13.182 20.481 hybrid contribution 0.177 0.743 -0.617 0.982 sum 5.298 -14.072 12.565 19.595 Atomic orbital electron populations 1.21705 0.93648 1.01753 1.03609 1.22520 0.95904 0.84172 0.99495 1.88204 1.17032 1.25139 1.93558 1.22557 0.83607 0.92909 1.02199 0.86850 1.23396 1.02715 1.02490 0.91268 1.22840 1.01399 1.00038 0.96926 0.85647 1.19445 0.88336 0.81362 0.78364 1.90733 1.15497 1.75476 1.57816 1.48080 1.06870 1.22070 1.55871 1.21562 0.80520 1.01075 0.98986 1.22333 1.01151 1.01847 0.97787 1.23908 0.94710 0.86463 0.95964 1.22663 0.97118 0.84032 0.93107 1.45761 1.76451 1.10930 1.00134 1.18998 1.37275 0.89236 0.89521 0.90099 1.24784 1.01365 0.98247 0.95890 1.69839 1.50371 1.31537 1.04905 0.86105 0.78900 0.81627 0.79153 1.21692 1.21552 1.20507 1.23093 0.98214 0.91546 0.89301 0.91416 0.91936 0.91431 0.93523 0.93743 0.87454 0.87734 0.91300 0.89143 0.92619 0.92000 0.91597 0.86781 0.94976 0.90998 0.93614 0.93749 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 37.16 0.38 -1.15 16 2 C 0.06 0.60 6.53 37.16 0.24 0.84 16 3 O -0.32 -4.66 8.48 -57.36 -0.49 -5.14 16 4 C 0.05 0.53 6.41 -26.70 -0.17 0.36 16 5 H 0.11 0.92 7.93 -51.93 -0.41 0.50 16 6 C -0.16 -1.65 9.71 -26.69 -0.26 -1.90 16 7 C -0.19 -2.33 4.65 -91.78 -0.43 -2.76 16 8 H 0.13 1.22 6.57 -51.93 -0.34 0.88 16 9 C 0.54 9.22 7.39 -10.99 -0.08 9.14 16 10 O -0.52 -11.00 14.38 -16.58 -0.24 -11.24 16 11 N -0.60 -10.13 2.72 -167.90 -0.46 -10.59 16 12 C 0.10 1.39 5.18 -4.04 -0.02 1.36 16 13 C -0.17 -2.03 9.96 37.16 0.37 -1.66 16 14 C 0.09 1.94 4.42 -70.14 -0.31 1.63 16 15 C 0.16 3.78 6.95 -2.83 -0.02 3.76 16 16 N -0.61 -15.92 3.70 -177.87 -0.66 -16.58 16 17 C -0.22 -6.36 10.69 -15.06 -0.16 -6.53 16 18 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.57 11.49 55.49 0.64 -26.93 16 21 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 2.26 8.44 -2.97 -0.03 2.23 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.76 6.34 -51.93 -0.33 0.43 16 34 H 0.09 1.39 5.80 -51.93 -0.30 1.09 16 35 H 0.05 0.59 7.03 -51.93 -0.37 0.23 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.89 5.99 -51.93 -0.31 0.58 16 38 H 0.11 2.62 7.18 -51.93 -0.37 2.25 16 39 H 0.03 0.76 6.02 -51.93 -0.31 0.45 16 40 H 0.07 1.94 7.30 -51.93 -0.38 1.57 16 41 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.79 5.38 -51.93 -0.28 0.52 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -34.31 342.72 -8.39 -42.70 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.75 Total: 0.18 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.58 Total: 5.05 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.48 Total: -54.10 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.72 Total: -16.38 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.31 -8.39 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949714719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.095 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds