Wall clock time and date at job start Tue Mar 31 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47036 * 2 1 4 4 C 1.42905 * 114.00107 * 180.02562 * 3 2 1 5 5 H 1.08998 * 115.55794 * 355.68634 * 4 3 2 6 6 C 1.52995 * 117.49929 * 141.37600 * 4 3 2 7 7 C 1.53001 * 60.00254 * 107.48903 * 6 4 3 8 8 H 1.08995 * 117.50087 * 252.48731 * 7 6 4 9 9 C 1.50695 * 117.49950 * 107.48755 * 7 6 4 10 10 O 1.21285 * 119.99939 * 291.39207 * 9 7 6 11 11 N 1.34779 * 120.00306 * 111.39530 * 9 7 6 12 12 C 1.46501 * 119.99487 * 359.97438 * 11 9 7 13 13 C 1.52998 * 109.47068 * 276.16415 * 12 11 9 14 14 C 1.46497 * 119.99998 * 180.02562 * 11 9 7 15 15 C 1.53947 * 113.83928 * 137.96905 * 14 11 9 16 16 N 1.47590 * 86.11684 * 90.74674 * 15 14 11 17 17 C 1.36930 * 134.49296 * 204.63710 * 16 15 14 18 18 H 1.08001 * 120.00019 * 180.02562 * 17 16 15 19 19 C 1.38821 * 120.00032 * 0.02562 * 17 16 15 20 20 N 1.31619 * 119.99954 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99893 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47301 * 59.99431 * 21 19 17 23 23 H 1.48501 * 109.46759 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47204 * 299.99268 * 21 19 17 25 25 C 1.47582 * 91.01238 * 24.64392 * 16 15 14 26 26 H 1.08997 * 109.47281 * 60.00098 * 1 2 3 27 27 H 1.09003 * 109.47043 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47378 * 299.99908 * 1 2 3 29 29 H 1.08999 * 109.46912 * 239.99870 * 2 1 3 30 30 H 1.08997 * 109.47281 * 119.99902 * 2 1 3 31 31 H 1.09001 * 117.50255 * 359.97438 * 6 4 3 32 32 H 1.08996 * 117.50025 * 214.97941 * 6 4 3 33 33 H 1.09003 * 109.47409 * 36.16507 * 12 11 9 34 34 H 1.09002 * 109.46616 * 156.16807 * 12 11 9 35 35 H 1.09008 * 109.46992 * 305.04246 * 13 12 11 36 36 H 1.08998 * 109.47076 * 65.04264 * 13 12 11 37 37 H 1.08997 * 109.47404 * 185.04643 * 13 12 11 38 38 H 1.09000 * 112.94542 * 6.27914 * 14 11 9 39 39 H 1.08992 * 113.77165 * 205.04755 * 15 14 11 40 40 H 1.09001 * 113.76424 * 336.44843 * 15 14 11 41 41 H 0.96999 * 119.99992 * 180.02562 * 20 19 17 42 42 H 1.09004 * 113.76805 * 221.05806 * 25 16 15 43 43 H 1.08998 * 113.77262 * 89.65769 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5198 0.0730 6 6 4.0510 2.5730 -0.8478 7 6 4.0426 2.6875 0.6779 8 1 3.3587 3.4091 1.1247 9 6 5.3542 2.5038 1.3967 10 8 5.8846 1.4134 1.4215 11 7 5.9379 3.5512 2.0122 12 6 5.2975 4.8685 1.9817 13 6 5.6645 5.5841 0.6802 14 6 7.2133 3.3727 2.7105 15 6 8.2162 4.5171 2.4767 16 7 7.6232 5.1466 3.6727 17 6 7.5209 6.4337 4.1287 18 1 7.0228 6.6367 5.0652 19 6 8.0574 7.4775 3.3873 20 7 8.6649 7.2300 2.2462 21 14 7.9172 9.2333 4.0091 22 1 8.5905 9.3467 5.3278 23 1 8.5661 10.1543 3.0416 24 1 6.4840 9.5948 4.1523 25 6 7.1851 3.8317 4.1797 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.3725 3.2188 -1.4051 32 1 5.0053 2.3648 -1.3316 33 1 4.2155 4.7479 2.0374 34 1 5.6414 5.4593 2.8307 35 1 6.7493 5.6252 0.5817 36 1 5.2433 5.0398 -0.1650 37 1 5.2626 6.5971 0.6967 38 1 7.6398 2.3796 2.5691 39 1 9.2574 4.2221 2.6061 40 1 8.0415 5.0729 1.5554 41 1 9.0401 7.9593 1.7283 42 1 6.1871 3.8402 4.6182 43 1 7.9234 3.3353 4.8093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949714720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:03 Heat of formation + Delta-G solvation = 13.758093 kcal Electronic energy + Delta-G solvation = -23146.561487 eV Core-core repulsion = 19809.490873 eV Total energy + Delta-G solvation = -3337.070614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12727 -38.61142 -37.45432 -35.02352 -34.37462 -32.15801 -30.95420 -29.74397 -27.62115 -24.83629 -24.70007 -23.11344 -23.00638 -22.35600 -21.91199 -19.57642 -18.07242 -17.63233 -16.79618 -16.22937 -15.82051 -15.69228 -15.11408 -14.76075 -14.36931 -13.88839 -13.70640 -13.12485 -12.92131 -12.90126 -12.72683 -12.61903 -12.47931 -12.19717 -11.94114 -11.42549 -11.36850 -11.29996 -11.09098 -11.05416 -10.87756 -10.63961 -10.56189 -10.33157 -10.01342 -9.73909 -9.50339 -9.45386 -9.20150 -8.76878 -7.99801 -6.87889 -5.80736 -3.13689 2.78092 3.11380 3.36017 3.41534 3.42164 3.63443 3.97191 4.41751 4.76978 4.78291 4.87108 4.92225 5.02920 5.13895 5.17763 5.23664 5.37789 5.45056 5.56428 5.60592 5.67878 5.69459 5.76570 5.90307 5.96790 6.07518 6.11983 6.18608 6.24968 6.45523 6.47999 6.53664 6.73097 6.93170 7.04910 7.10375 7.27485 7.34552 7.62335 7.92653 8.03540 8.60671 9.00226 9.66330 10.55229 11.35011 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028371 B = 0.003960 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.671569 B = 7069.228890 C = 7407.175370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.047 3.953 5 H 0.123 0.877 6 C -0.153 4.153 7 C -0.184 4.184 8 H 0.128 0.872 9 C 0.542 3.458 10 O -0.561 6.561 11 N -0.566 5.566 12 C 0.098 3.902 13 C -0.160 4.160 14 C 0.086 3.914 15 C 0.148 3.852 16 N -0.606 5.606 17 C -0.228 4.228 18 H 0.078 0.922 19 C 0.000 4.000 20 N -0.915 5.915 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.105 3.895 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.035 0.965 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.061 -10.527 -5.796 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.276 6.276 4 C -0.011 4.011 5 H 0.140 0.860 6 C -0.191 4.191 7 C -0.205 4.205 8 H 0.146 0.854 9 C 0.330 3.670 10 O -0.441 6.441 11 N -0.295 5.295 12 C -0.024 4.024 13 C -0.218 4.218 14 C -0.019 4.019 15 C 0.022 3.978 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.022 4.022 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.052 0.948 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.857 -10.555 -5.783 16.895 hybrid contribution 0.272 1.063 0.522 1.215 sum -11.585 -9.491 -5.261 15.874 Atomic orbital electron populations 1.21753 0.93674 1.02273 1.03163 1.22542 0.95396 0.83468 1.00495 1.87805 1.18879 1.26865 1.94051 1.22630 0.81591 0.94492 1.02408 0.85965 1.23394 1.02797 1.01699 0.91181 1.22688 0.97778 1.03527 0.96529 0.85383 1.19502 0.85061 0.83964 0.78469 1.90624 1.65583 1.25612 1.62264 1.47470 1.21730 1.09257 1.51043 1.21840 0.95228 0.83357 1.01998 1.22170 1.04060 0.99423 0.96146 1.22930 0.85211 1.00071 0.93652 1.22787 0.92916 0.88339 0.93764 1.46141 1.65196 0.99855 1.22127 1.18927 1.31625 0.80686 1.04263 0.90439 1.24720 1.00223 0.97601 0.97227 1.69794 1.41580 1.30747 1.13998 0.86285 0.77638 0.84568 0.77748 1.21346 1.21625 1.21078 1.23017 0.97838 0.87430 0.93905 0.91855 0.91026 0.91787 0.93075 0.92967 0.87371 0.87581 0.92724 0.85770 0.90284 0.94321 0.92418 0.88881 0.94776 0.89521 0.93593 0.93601 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.55 6.53 37.16 0.24 0.80 16 3 O -0.36 -4.52 10.60 -35.23 -0.37 -4.89 16 4 C 0.05 0.62 5.96 -26.73 -0.16 0.46 16 5 H 0.12 1.62 7.45 -51.93 -0.39 1.23 16 6 C -0.15 -1.89 9.86 -26.73 -0.26 -2.16 16 7 C -0.18 -2.66 4.71 -91.77 -0.43 -3.09 16 8 H 0.13 1.78 6.53 -51.93 -0.34 1.44 16 9 C 0.54 9.62 7.41 -10.99 -0.08 9.54 16 10 O -0.56 -11.26 15.72 5.55 0.09 -11.18 16 11 N -0.57 -10.47 2.71 -167.89 -0.46 -10.92 16 12 C 0.10 1.77 5.21 -4.04 -0.02 1.75 16 13 C -0.16 -2.85 10.07 37.16 0.37 -2.47 16 14 C 0.09 1.71 4.54 -70.13 -0.32 1.40 16 15 C 0.15 3.37 6.80 -2.97 -0.02 3.35 16 16 N -0.61 -14.52 2.27 -178.05 -0.40 -14.93 16 17 C -0.23 -5.95 9.70 -15.06 -0.15 -6.10 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 20 N -0.91 -25.20 11.38 55.49 0.63 -24.57 16 21 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.11 2.15 8.27 -2.97 -0.02 2.12 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 0.85 6.28 -51.93 -0.33 0.53 16 34 H 0.12 2.65 5.08 -51.93 -0.26 2.39 16 35 H 0.08 1.65 5.65 -51.92 -0.29 1.36 16 36 H 0.04 0.60 7.30 -51.93 -0.38 0.22 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.83 7.19 -51.93 -0.37 1.46 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 2.12 4.53 -51.93 -0.23 1.88 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -29.27 344.10 -7.71 -36.98 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.79 Total: 3.47 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.56 Total: 4.70 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.23 Total: -50.42 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.29 Total: -16.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.27 -7.71 -36.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949714720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.740 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds