Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47459 * 2 1 4 4 C 1.42902 * 114.00388 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55855 * 4.30610 * 4 3 2 6 6 C 1.53070 * 117.49401 * 218.60227 * 4 3 2 7 7 C 1.52994 * 117.50018 * 149.99653 * 4 3 2 8 8 H 1.08999 * 117.50183 * 359.97438 * 7 4 3 9 9 C 1.50705 * 117.49776 * 214.98060 * 7 4 3 10 10 O 1.21285 * 120.00234 * 0.08381 * 9 7 4 11 11 N 1.34773 * 119.99953 * 180.08896 * 9 7 4 12 12 C 1.46499 * 120.00147 * 359.97438 * 11 9 7 13 13 C 1.52998 * 109.46994 * 84.57014 * 12 11 9 14 14 C 1.46505 * 120.00213 * 179.97438 * 11 9 7 15 15 C 1.53940 * 113.74597 * 242.81010 * 14 11 9 16 16 N 1.47583 * 86.23673 * 269.09886 * 15 14 11 17 17 C 1.36942 * 134.48981 * 155.43306 * 16 15 14 18 18 H 1.08001 * 120.00149 * 353.41343 * 17 16 15 19 19 C 1.38814 * 119.99778 * 173.42282 * 17 16 15 20 20 N 1.31623 * 119.99878 * 5.02364 * 19 17 16 21 21 Si 1.86801 * 119.99828 * 185.02490 * 19 17 16 22 22 H 1.48502 * 109.47045 * 94.98238 * 21 19 17 23 23 H 1.48499 * 109.46718 * 214.97955 * 21 19 17 24 24 H 1.48494 * 109.47159 * 334.98408 * 21 19 17 25 25 C 1.47807 * 90.92640 * 335.45615 * 16 15 14 26 26 H 1.08997 * 109.47471 * 300.00265 * 1 2 3 27 27 H 1.08998 * 109.47230 * 60.00289 * 1 2 3 28 28 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47234 * 239.99247 * 2 1 3 30 30 H 1.09002 * 109.46943 * 120.00108 * 2 1 3 31 31 H 1.08997 * 117.51444 * 145.03597 * 6 4 3 32 32 H 1.08994 * 117.51617 * 359.97438 * 6 4 3 33 33 H 1.08997 * 109.47304 * 204.57174 * 12 11 9 34 34 H 1.08997 * 109.47161 * 324.56702 * 12 11 9 35 35 H 1.08994 * 109.47223 * 66.63309 * 13 12 11 36 36 H 1.09007 * 109.47040 * 186.63133 * 13 12 11 37 37 H 1.09002 * 109.47534 * 306.62686 * 13 12 11 38 38 H 1.09004 * 112.93866 * 14.40393 * 14 11 9 39 39 H 1.09005 * 113.76603 * 23.44953 * 15 14 11 40 40 H 1.08998 * 113.77252 * 154.73557 * 15 14 11 41 41 H 0.96999 * 119.99862 * 180.02562 * 20 19 17 42 42 H 1.08998 * 113.66839 * 270.24057 * 25 16 15 43 43 H 1.09000 * 113.93851 * 138.88545 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9771 0.5197 -0.0748 6 6 4.0519 2.5735 0.8465 7 6 4.0420 2.6875 -0.6793 8 1 3.3576 3.4088 -1.1257 9 6 5.3532 2.5039 -1.3993 10 8 5.8827 1.4130 -1.4262 11 7 5.9374 3.5518 -2.0131 12 6 5.2977 4.8694 -1.9810 13 6 5.6797 5.5904 -0.6868 14 6 7.2123 3.3735 -2.7126 15 6 8.3680 4.1955 -2.1140 16 7 7.9757 5.2562 -3.0622 17 6 8.1201 6.6177 -3.0927 18 1 8.5259 7.1370 -2.2371 19 6 7.7447 7.3302 -4.2233 20 7 7.1592 6.7117 -5.2268 21 14 8.0706 9.1670 -4.3206 22 1 9.3535 9.4053 -5.0295 23 1 6.9657 9.8272 -5.0613 24 1 8.1517 9.7287 -2.9483 25 6 7.3644 4.2573 -3.9639 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 5.0067 2.3658 1.3295 32 1 3.3740 3.2200 1.4036 33 1 5.6319 5.4565 -2.8363 34 1 4.2152 4.7488 -2.0238 35 1 6.7461 5.8158 -0.6976 36 1 5.1130 6.5181 -0.6068 37 1 5.4522 4.9510 0.1662 38 1 7.4608 2.3259 -2.8824 39 1 8.2201 4.4646 -1.0681 40 1 9.3541 3.7742 -2.3094 41 1 6.8972 7.2095 -6.0170 42 1 8.0558 3.8551 -4.7044 43 1 6.4151 4.5739 -4.3962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949714721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = 11.648134 kcal Electronic energy + Delta-G solvation = -23102.564398 eV Core-core repulsion = 19765.402289 eV Total energy + Delta-G solvation = -3337.162109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14712 -38.61376 -37.45331 -35.03998 -34.40138 -32.14384 -30.95823 -29.86256 -27.53008 -25.01006 -24.70411 -23.11671 -23.00988 -22.35615 -21.93126 -19.60988 -18.05536 -17.67068 -16.76636 -16.25024 -15.87065 -15.69933 -15.01100 -14.86983 -14.40945 -13.91403 -13.71489 -13.15809 -12.98476 -12.90059 -12.70074 -12.64529 -12.48065 -12.22248 -12.06452 -11.52896 -11.38919 -11.33446 -11.10512 -11.04276 -10.89612 -10.57752 -10.52440 -10.34323 -10.06137 -9.75077 -9.54137 -9.46183 -9.21288 -8.82075 -8.03220 -6.90428 -5.82711 -3.13490 2.75889 3.09579 3.35995 3.42157 3.43757 3.61078 3.94829 4.42495 4.74786 4.75967 4.86354 4.91166 5.01065 5.13262 5.17765 5.22683 5.36666 5.44781 5.54323 5.57202 5.64677 5.68556 5.73355 5.90104 5.90976 6.00124 6.06055 6.14660 6.23873 6.36236 6.42663 6.55487 6.71847 6.90463 7.01083 7.09344 7.16185 7.30937 7.51841 7.90758 8.00357 8.58146 8.99835 9.66094 10.56132 11.34549 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.003882 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.377118 B = 7210.695994 C = 7490.005545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.048 3.952 5 H 0.123 0.877 6 C -0.154 4.154 7 C -0.184 4.184 8 H 0.129 0.871 9 C 0.542 3.458 10 O -0.560 6.560 11 N -0.567 5.567 12 C 0.103 3.897 13 C -0.157 4.157 14 C 0.086 3.914 15 C 0.105 3.895 16 N -0.606 5.606 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.156 3.844 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.254 0.746 42 H 0.040 0.960 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -9.874 10.370 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.276 6.276 4 C -0.011 4.011 5 H 0.140 0.860 6 C -0.191 4.191 7 C -0.206 4.206 8 H 0.147 0.853 9 C 0.330 3.670 10 O -0.439 6.439 11 N -0.296 5.296 12 C -0.019 4.019 13 C -0.216 4.216 14 C -0.019 4.019 15 C -0.022 4.022 16 N -0.333 5.333 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.030 3.970 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.828 -9.934 10.195 17.298 hybrid contribution 0.500 1.102 -0.299 1.247 sum -9.329 -8.832 9.896 16.216 Atomic orbital electron populations 1.21751 0.93654 1.02289 1.03177 1.22545 0.95416 0.83435 1.00503 1.87806 1.18831 1.26902 1.94035 1.22631 0.81645 0.94477 1.02299 0.85953 1.23400 1.02750 1.01809 0.91181 1.22701 0.97815 1.03629 0.96427 0.85307 1.19490 0.85007 0.83935 0.78533 1.90629 1.65731 1.25592 1.61994 1.47476 1.21716 1.09186 1.51200 1.21708 0.95330 0.83307 1.01545 1.22104 1.03514 0.99425 0.96509 1.22954 0.83560 0.99261 0.96081 1.23034 0.94927 0.89018 0.95176 1.46099 1.65651 1.00555 1.20988 1.18955 1.36625 0.79820 0.99164 0.90346 1.24774 1.01447 0.97906 0.96059 1.69818 1.44775 1.34768 1.07200 0.86203 0.77531 0.85188 0.77496 1.21766 1.21774 1.20617 1.22600 0.98142 0.85474 0.90752 0.91874 0.91747 0.91015 0.92927 0.93092 0.87670 0.87376 0.86194 0.92454 0.91095 0.92471 0.94027 0.88998 0.93545 0.94158 0.93599 0.94239 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.15 0.38 -0.79 16 2 C 0.06 0.55 6.53 37.15 0.24 0.79 16 3 O -0.36 -4.48 10.60 -35.23 -0.37 -4.86 16 4 C 0.05 0.62 5.96 -26.70 -0.16 0.46 16 5 H 0.12 1.60 7.45 -51.93 -0.39 1.21 16 6 C -0.15 -1.84 9.93 -26.69 -0.27 -2.10 16 7 C -0.18 -2.62 4.79 -91.77 -0.44 -3.06 16 8 H 0.13 1.77 6.52 -51.93 -0.34 1.43 16 9 C 0.54 9.50 7.42 -10.98 -0.08 9.42 16 10 O -0.56 -11.13 15.77 5.55 0.09 -11.05 16 11 N -0.57 -10.34 2.70 -167.60 -0.45 -10.79 16 12 C 0.10 1.83 5.13 -4.04 -0.02 1.81 16 13 C -0.16 -2.58 10.00 37.16 0.37 -2.21 16 14 C 0.09 1.70 4.49 -69.81 -0.31 1.39 16 15 C 0.11 2.15 8.07 -2.98 -0.02 2.13 16 16 N -0.61 -14.42 2.42 -177.11 -0.43 -14.85 16 17 C -0.22 -5.68 10.28 -15.06 -0.15 -5.84 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 20 N -0.92 -25.75 11.53 55.49 0.64 -25.11 16 21 Si 0.91 21.31 29.56 -169.99 -5.02 16.29 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.16 3.54 6.43 -2.85 -0.02 3.52 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.12 2.61 5.28 -51.93 -0.27 2.34 16 34 H 0.06 0.89 6.24 -51.93 -0.32 0.57 16 35 H 0.07 1.33 6.30 -51.93 -0.33 1.01 16 36 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.04 0.61 7.46 -51.93 -0.39 0.22 16 38 H 0.09 1.79 7.28 -51.93 -0.38 1.41 16 39 H 0.05 0.93 6.91 -51.93 -0.36 0.57 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.84 6.39 -51.93 -0.33 1.51 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -29.59 346.09 -7.79 -37.38 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.88 Total: 2.48 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.58 Total: 5.29 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.24 Total: -50.75 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.29 Total: -15.90 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.59 -7.79 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949714721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.027 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds