Wall clock time and date at job start Tue Mar 31 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47459 * 2 1 4 4 C 1.42902 * 114.00388 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55855 * 4.30610 * 4 3 2 6 6 C 1.53070 * 117.49401 * 218.60227 * 4 3 2 7 7 C 1.52994 * 117.50018 * 149.99653 * 4 3 2 8 8 H 1.08999 * 117.50183 * 359.97438 * 7 4 3 9 9 C 1.50705 * 117.49776 * 214.98060 * 7 4 3 10 10 O 1.21285 * 120.00234 * 0.08381 * 9 7 4 11 11 N 1.34773 * 119.99953 * 180.08896 * 9 7 4 12 12 C 1.46499 * 120.00147 * 359.97438 * 11 9 7 13 13 C 1.52998 * 109.46994 * 84.57014 * 12 11 9 14 14 C 1.46505 * 120.00213 * 179.97438 * 11 9 7 15 15 C 1.53940 * 113.74597 * 242.81010 * 14 11 9 16 16 N 1.47583 * 86.23673 * 269.09886 * 15 14 11 17 17 C 1.36942 * 134.48981 * 155.43306 * 16 15 14 18 18 H 1.08001 * 120.00149 * 353.41343 * 17 16 15 19 19 C 1.38814 * 119.99778 * 173.42282 * 17 16 15 20 20 N 1.31623 * 119.99878 * 5.02364 * 19 17 16 21 21 Si 1.86801 * 119.99828 * 185.02490 * 19 17 16 22 22 H 1.48502 * 109.47045 * 94.98238 * 21 19 17 23 23 H 1.48499 * 109.46718 * 214.97955 * 21 19 17 24 24 H 1.48494 * 109.47159 * 334.98408 * 21 19 17 25 25 C 1.47807 * 90.92640 * 335.45615 * 16 15 14 26 26 H 1.08997 * 109.47471 * 300.00265 * 1 2 3 27 27 H 1.08998 * 109.47230 * 60.00289 * 1 2 3 28 28 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47234 * 239.99247 * 2 1 3 30 30 H 1.09002 * 109.46943 * 120.00108 * 2 1 3 31 31 H 1.08997 * 117.51444 * 145.03597 * 6 4 3 32 32 H 1.08994 * 117.51617 * 359.97438 * 6 4 3 33 33 H 1.08997 * 109.47304 * 204.57174 * 12 11 9 34 34 H 1.08997 * 109.47161 * 324.56702 * 12 11 9 35 35 H 1.08994 * 109.47223 * 66.63309 * 13 12 11 36 36 H 1.09007 * 109.47040 * 186.63133 * 13 12 11 37 37 H 1.09002 * 109.47534 * 306.62686 * 13 12 11 38 38 H 1.09004 * 112.93866 * 14.40393 * 14 11 9 39 39 H 1.09005 * 113.76603 * 23.44953 * 15 14 11 40 40 H 1.08998 * 113.77252 * 154.73557 * 15 14 11 41 41 H 0.96999 * 119.99862 * 180.02562 * 20 19 17 42 42 H 1.08998 * 113.66839 * 270.24057 * 25 16 15 43 43 H 1.09000 * 113.93851 * 138.88545 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9771 0.5197 -0.0748 6 6 4.0519 2.5735 0.8465 7 6 4.0420 2.6875 -0.6793 8 1 3.3576 3.4088 -1.1257 9 6 5.3532 2.5039 -1.3993 10 8 5.8827 1.4130 -1.4262 11 7 5.9374 3.5518 -2.0131 12 6 5.2977 4.8694 -1.9810 13 6 5.6797 5.5904 -0.6868 14 6 7.2123 3.3735 -2.7126 15 6 8.3680 4.1955 -2.1140 16 7 7.9757 5.2562 -3.0622 17 6 8.1201 6.6177 -3.0927 18 1 8.5259 7.1370 -2.2371 19 6 7.7447 7.3302 -4.2233 20 7 7.1592 6.7117 -5.2268 21 14 8.0706 9.1670 -4.3206 22 1 9.3535 9.4053 -5.0295 23 1 6.9657 9.8272 -5.0613 24 1 8.1517 9.7287 -2.9483 25 6 7.3644 4.2573 -3.9639 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 5.0067 2.3658 1.3295 32 1 3.3740 3.2200 1.4036 33 1 5.6319 5.4565 -2.8363 34 1 4.2152 4.7488 -2.0238 35 1 6.7461 5.8158 -0.6976 36 1 5.1130 6.5181 -0.6068 37 1 5.4522 4.9510 0.1662 38 1 7.4608 2.3259 -2.8824 39 1 8.2201 4.4646 -1.0681 40 1 9.3541 3.7742 -2.3094 41 1 6.8972 7.2095 -6.0170 42 1 8.0558 3.8551 -4.7044 43 1 6.4151 4.5739 -4.3962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949714721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:04 Heat of formation + Delta-G solvation = -5.164772 kcal Electronic energy + Delta-G solvation = -23103.293460 eV Core-core repulsion = 19765.402289 eV Total energy + Delta-G solvation = -3337.891171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56272 -39.89046 -38.77814 -36.16906 -35.85899 -34.08324 -31.68821 -31.35704 -29.36006 -26.75129 -26.16531 -24.63870 -23.78966 -23.71132 -23.04231 -21.13151 -19.47967 -18.98710 -18.57040 -17.54399 -17.19288 -16.73786 -16.47393 -16.27880 -15.77056 -15.63018 -15.12306 -14.56213 -14.52725 -14.31092 -13.88429 -13.71039 -13.51270 -13.33403 -13.26780 -13.04275 -12.99856 -12.82194 -12.61282 -12.27164 -12.15298 -12.03841 -11.91075 -11.74777 -11.56265 -11.49109 -11.34234 -10.98588 -10.70880 -10.17833 -9.55385 -8.86013 -7.86327 -5.17244 1.44669 1.48205 1.50336 1.57808 1.87598 2.50015 2.53836 2.86034 3.29294 3.44393 3.58251 3.72283 3.88787 3.97366 4.05269 4.19980 4.20976 4.37088 4.44006 4.48587 4.52101 4.53460 4.59162 4.74948 4.78715 4.80477 4.88648 4.93247 5.02023 5.04045 5.04863 5.07036 5.24787 5.29365 5.41186 5.49260 5.52612 5.77382 5.93042 6.21781 6.55971 6.95749 7.16321 7.65229 8.60363 9.30764 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.003882 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.377118 B = 7210.695994 C = 7490.005545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.052 3.948 5 H 0.119 0.881 6 C -0.133 4.133 7 C -0.198 4.198 8 H 0.135 0.865 9 C 0.543 3.457 10 O -0.585 6.585 11 N -0.571 5.571 12 C 0.110 3.890 13 C -0.147 4.147 14 C 0.104 3.896 15 C 0.111 3.889 16 N -0.620 5.620 17 C -0.215 4.215 18 H 0.081 0.919 19 C -0.057 4.057 20 N -0.948 5.948 21 Si 0.965 3.035 22 H -0.296 1.296 23 H -0.297 1.297 24 H -0.268 1.268 25 C 0.158 3.842 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.247 0.753 42 H 0.028 0.972 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 -10.127 12.479 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.289 6.289 4 C -0.007 4.007 5 H 0.136 0.864 6 C -0.170 4.170 7 C -0.219 4.219 8 H 0.153 0.847 9 C 0.333 3.667 10 O -0.467 6.467 11 N -0.300 5.300 12 C -0.012 4.012 13 C -0.205 4.205 14 C -0.001 4.001 15 C -0.015 4.015 16 N -0.347 5.347 17 C -0.344 4.344 18 H 0.099 0.901 19 C -0.251 4.251 20 N -0.597 5.597 21 Si 0.795 3.205 22 H -0.224 1.224 23 H -0.224 1.224 24 H -0.192 1.192 25 C 0.032 3.968 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.725 -10.197 12.341 19.269 hybrid contribution 0.753 1.085 -0.927 1.614 sum -9.972 -9.112 11.414 17.684 Atomic orbital electron populations 1.21768 0.92263 1.03622 1.02877 1.22794 0.96578 0.82298 1.01112 1.87793 1.18357 1.28697 1.94045 1.22595 0.82059 0.94069 1.01971 0.86392 1.23500 1.03124 1.00996 0.89398 1.22643 0.96155 1.05288 0.97860 0.84742 1.20005 0.85741 0.83013 0.77933 1.90613 1.66728 1.26428 1.62934 1.47529 1.21255 1.09833 1.51354 1.21599 0.96456 0.82582 1.00591 1.21993 1.01860 1.00215 0.96427 1.22641 0.84410 0.98732 0.94328 1.23111 0.95632 0.87826 0.94935 1.46243 1.66036 1.00545 1.21916 1.19203 1.35098 0.81088 0.98973 0.90113 1.25430 1.02053 1.01470 0.96114 1.69984 1.46337 1.35835 1.07550 0.85248 0.76529 0.81008 0.77708 1.22364 1.22396 1.19219 1.22465 0.96667 0.86081 0.91588 0.91696 0.92482 0.88906 0.93114 0.91722 0.87210 0.85380 0.90354 0.90153 0.93674 0.91308 0.91869 0.88522 0.92705 0.92994 0.94415 0.95396 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.83 6.53 71.98 0.47 1.30 16 3 O -0.37 -8.51 10.60 -148.98 -1.58 -10.09 16 4 C 0.05 1.23 5.96 30.62 0.18 1.41 16 5 H 0.12 2.89 7.45 -2.39 -0.02 2.88 16 6 C -0.13 -2.76 9.93 30.62 0.30 -2.45 16 7 C -0.20 -5.21 4.79 -11.54 -0.06 -5.27 16 8 H 0.13 3.38 6.52 -2.39 -0.02 3.37 16 9 C 0.54 18.31 7.42 87.66 0.65 18.96 16 10 O -0.59 -22.70 15.77 -3.04 -0.05 -22.75 16 11 N -0.57 -20.42 2.70 -802.56 -2.17 -22.59 16 12 C 0.11 3.82 5.13 86.38 0.44 4.26 16 13 C -0.15 -4.57 10.00 71.98 0.72 -3.85 16 14 C 0.10 4.10 4.49 46.63 0.21 4.31 16 15 C 0.11 4.45 8.07 86.48 0.70 5.15 16 16 N -0.62 -29.75 2.42 -714.25 -1.73 -31.48 16 17 C -0.22 -11.25 10.28 84.03 0.86 -10.39 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 20 N -0.95 -54.49 11.53 21.65 0.25 -54.24 16 21 Si 0.97 44.15 29.56 68.60 2.03 46.17 16 22 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C 0.16 7.35 6.43 86.44 0.56 7.90 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 3.47 5.28 -2.39 -0.01 3.46 16 34 H 0.08 2.40 6.24 -2.39 -0.01 2.38 16 35 H 0.04 1.63 6.30 -2.39 -0.02 1.62 16 36 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 1.67 7.46 -2.39 -0.02 1.66 16 38 H 0.10 3.74 7.28 -2.38 -0.02 3.72 16 39 H 0.05 2.12 6.91 -2.38 -0.02 2.10 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 2.59 6.39 -2.39 -0.02 2.58 16 Total: -1.00 -63.43 346.09 3.99 -59.43 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.99 Total: 18.06 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 6.25 Total: 17.48 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.64 Total: -108.31 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.63 Total: -32.84 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.43 3.99 -59.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949714721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.266 kcal (2) G-P(sol) polarization free energy of solvation -63.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds