Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46895 * 2 1 4 4 C 1.34781 * 120.00100 * 270.00564 * 3 2 1 5 5 O 1.21282 * 119.99705 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.99888 * 359.97438 * 4 3 2 7 7 C 1.53783 * 113.61634 * 279.13805 * 6 4 3 8 8 C 1.53951 * 87.01955 * 220.05072 * 7 6 4 9 9 O 1.42898 * 113.61205 * 270.79995 * 8 7 6 10 10 C 1.42905 * 114.00018 * 247.53383 * 9 8 7 11 11 C 1.53778 * 87.11445 * 25.36104 * 8 7 6 12 12 C 1.46499 * 119.99897 * 90.00142 * 3 2 1 13 13 C 1.53499 * 114.20527 * 60.00259 * 12 3 2 14 14 N 1.47066 * 87.98642 * 220.14732 * 13 12 3 15 15 C 1.36935 * 136.05905 * 207.08539 * 14 13 12 16 16 H 1.08000 * 119.99741 * 6.75982 * 15 14 13 17 17 C 1.38807 * 120.00115 * 186.75868 * 15 14 13 18 18 N 1.31618 * 120.00072 * 172.25744 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 352.25358 * 17 15 14 20 20 H 1.48504 * 109.47011 * 175.35922 * 19 17 15 21 21 H 1.48496 * 109.47781 * 295.36183 * 19 17 15 22 22 H 1.48498 * 109.46976 * 55.36546 * 19 17 15 23 23 C 1.47070 * 87.88467 * 27.33761 * 14 13 12 24 24 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46967 * 299.99391 * 1 2 3 26 26 H 1.09002 * 109.47914 * 59.99482 * 1 2 3 27 27 H 1.09003 * 109.46508 * 240.00654 * 2 1 3 28 28 H 1.08993 * 109.47601 * 119.99993 * 2 1 3 29 29 H 1.09004 * 112.84842 * 50.33564 * 6 4 3 30 30 H 1.09003 * 113.61352 * 334.57271 * 7 6 4 31 31 H 1.08999 * 113.61151 * 105.46771 * 7 6 4 32 32 H 1.09002 * 113.66608 * 139.93359 * 8 7 6 33 33 H 1.09000 * 109.46960 * 300.00355 * 10 9 8 34 34 H 1.09000 * 109.46900 * 60.00204 * 10 9 8 35 35 H 1.09002 * 109.47022 * 179.97438 * 10 9 8 36 36 H 1.08998 * 113.61552 * 220.08908 * 11 8 7 37 37 H 1.09004 * 113.61355 * 89.18491 * 11 8 7 38 38 H 1.09003 * 113.28482 * 193.06179 * 12 3 2 39 39 H 1.09001 * 113.46838 * 105.36625 * 13 12 3 40 40 H 1.09000 * 113.46246 * 334.92583 * 13 12 3 41 41 H 0.97000 * 119.99802 * 4.88275 * 18 17 15 42 42 H 1.09004 * 113.46146 * 87.44024 * 23 14 13 43 43 H 1.08996 * 113.47229 * 217.87578 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0167 -1.1672 5 8 2.6466 3.1603 -1.1671 6 6 1.9921 1.3061 -2.4723 7 6 3.1368 0.3697 -2.8938 8 6 2.9104 0.8714 -4.3315 9 8 1.9501 0.1046 -5.0607 10 6 2.5048 -0.6404 -6.1468 11 6 2.3313 2.1533 -3.7101 12 6 2.2624 2.0718 1.2687 13 6 3.3085 1.3928 2.1637 14 7 2.4508 1.7075 3.3162 15 6 2.6394 1.9288 4.6543 16 1 3.6402 1.9929 5.0552 17 6 1.5444 2.0707 5.4955 18 7 1.7189 2.1306 6.7986 19 14 -0.1770 2.1768 4.7778 20 1 -1.1716 2.2112 5.8801 21 1 -0.2984 3.4122 3.9629 22 1 -0.4296 0.9912 3.9201 23 6 1.3007 1.6736 2.4003 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.0076 0.8404 -2.5184 30 1 4.1056 0.6510 -2.4807 31 1 2.9086 -0.6874 -2.7581 32 1 3.8330 1.0344 -4.8885 33 1 2.9744 0.0434 -6.8540 34 1 3.2508 -1.3377 -5.7656 35 1 1.7123 -1.1953 -6.6490 36 1 1.4537 2.5340 -4.2326 37 1 3.0794 2.9232 -3.5206 38 1 2.4024 3.1467 1.1542 39 1 4.2670 1.9116 2.1815 40 1 3.4105 0.3237 1.9777 41 1 2.6159 2.1469 7.1676 42 1 0.8735 0.6785 2.2767 43 1 0.5486 2.4315 2.6196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950573292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = 13.566689 kcal Electronic energy + Delta-G solvation = -23162.600850 eV Core-core repulsion = 19825.521936 eV Total energy + Delta-G solvation = -3337.078914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75608 -39.28782 -37.87134 -35.72975 -35.19173 -32.33073 -30.38595 -28.24500 -27.20312 -26.00553 -25.83133 -25.39693 -23.44311 -22.63031 -20.50856 -19.45515 -18.68566 -17.77955 -17.30586 -16.71776 -16.22577 -15.62779 -15.56020 -15.24124 -15.08159 -14.17526 -14.09464 -13.63019 -13.46214 -13.17979 -12.93411 -12.73879 -12.43765 -12.35764 -12.21802 -11.93858 -11.81087 -11.53385 -11.45239 -11.23379 -11.03209 -10.91510 -10.63947 -10.48782 -10.41080 -9.88640 -9.52641 -9.36751 -9.22164 -8.87121 -8.28825 -7.17283 -6.34715 -3.25706 2.72200 3.12111 3.33001 3.39010 3.43483 3.63621 4.23993 4.35404 4.50193 4.56153 4.57195 4.77800 4.89938 4.96482 5.02589 5.03487 5.10354 5.11355 5.30095 5.35949 5.41124 5.44076 5.49970 5.54262 5.67480 5.76124 5.80811 5.84719 5.85480 5.92003 6.00758 6.12492 6.22045 6.29039 6.37779 6.55187 6.88034 6.99187 7.06070 7.62762 8.21559 8.35131 8.95210 9.46992 10.32179 11.18110 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036046 B = 0.003909 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.594990 B = 7160.859684 C = 7370.960863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.522 3.478 5 O -0.544 6.544 6 C -0.129 4.129 7 C -0.141 4.141 8 C 0.062 3.938 9 O -0.369 6.369 10 C 0.031 3.969 11 C -0.117 4.117 12 C 0.099 3.901 13 C 0.112 3.888 14 N -0.621 5.621 15 C -0.304 4.304 16 H 0.084 0.916 17 C -0.024 4.024 18 N -0.932 5.932 19 Si 1.070 2.930 20 H -0.294 1.294 21 H -0.293 1.293 22 H -0.287 1.287 23 C 0.089 3.911 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.261 0.739 42 H 0.054 0.946 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -7.272 -25.444 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.310 3.690 5 O -0.421 6.421 6 C -0.150 4.150 7 C -0.179 4.179 8 C 0.004 3.996 9 O -0.287 6.287 10 C -0.066 4.066 11 C -0.155 4.155 12 C -0.005 4.005 13 C -0.016 4.016 14 N -0.350 5.350 15 C -0.430 4.430 16 H 0.102 0.898 17 C -0.222 4.222 18 N -0.574 5.574 19 Si 0.903 3.097 20 H -0.221 1.221 21 H -0.221 1.221 22 H -0.214 1.214 23 C -0.037 4.037 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.168 -6.526 -24.680 25.555 hybrid contribution 1.848 -0.340 -0.347 1.911 sum 0.680 -6.867 -25.027 25.961 Atomic orbital electron populations 1.22348 0.95849 1.02383 1.02954 1.21601 0.94633 0.82653 1.03350 1.48057 1.64690 1.14045 1.05862 1.20519 0.76968 0.86404 0.85106 1.90667 1.46166 1.17929 1.87385 1.22729 1.01293 0.98612 0.92364 1.23431 0.98522 0.99860 0.96113 1.23120 0.92055 0.92713 0.91743 1.87888 1.33687 1.62265 1.44882 1.22819 0.99588 0.95225 0.88956 1.23107 1.02626 0.95812 0.93919 1.23566 0.98469 0.98370 0.80070 1.22741 0.95199 0.97252 0.86364 1.45701 1.02725 1.82481 1.04070 1.20115 0.95483 1.48094 0.79302 0.89782 1.25743 1.03014 0.99149 0.94333 1.70922 1.24296 1.52451 1.09766 0.83691 0.75867 0.76268 0.73863 1.22135 1.22088 1.21385 1.23284 0.92984 0.99258 0.88170 0.91492 0.91397 0.92501 0.90311 0.89710 0.86599 0.88736 0.90005 0.90403 0.93936 0.93921 0.89566 0.90173 0.87564 0.85921 0.93386 0.94336 0.92859 0.92890 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.86 37.16 0.37 -1.66 16 2 C 0.10 1.22 4.99 -4.04 -0.02 1.20 16 3 N -0.59 -9.02 2.72 -165.73 -0.45 -9.47 16 4 C 0.52 7.84 7.20 -10.98 -0.08 7.76 16 5 O -0.54 -10.12 15.42 5.56 0.09 -10.04 16 6 C -0.13 -1.43 2.73 -90.96 -0.25 -1.68 16 7 C -0.14 -1.28 6.69 -25.83 -0.17 -1.46 16 8 C 0.06 0.54 4.38 -25.83 -0.11 0.42 16 9 O -0.37 -3.41 10.63 -35.23 -0.37 -3.78 16 10 C 0.03 0.19 10.85 101.05 1.10 1.28 16 11 C -0.12 -1.21 7.23 -25.92 -0.19 -1.39 16 12 C 0.10 1.88 4.57 -67.68 -0.31 1.57 16 13 C 0.11 2.28 8.24 -8.50 -0.07 2.21 16 14 N -0.62 -15.55 3.70 -184.61 -0.68 -16.23 16 15 C -0.30 -8.88 11.08 -15.06 -0.17 -9.05 16 16 H 0.08 2.58 8.05 -52.49 -0.42 2.16 16 17 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 18 N -0.93 -29.65 13.70 55.49 0.76 -28.89 16 19 Si 1.07 27.07 25.13 -169.99 -4.27 22.80 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.29 -7.13 6.65 56.52 0.38 -6.75 16 22 H -0.29 -6.64 6.13 56.52 0.35 -6.29 16 23 C 0.09 1.91 4.42 -8.37 -0.04 1.87 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.93 6.10 -51.92 -0.32 0.61 16 26 H 0.06 0.60 7.24 -51.93 -0.38 0.23 16 27 H 0.08 0.76 5.66 -51.93 -0.29 0.46 16 28 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 29 H 0.12 1.20 6.96 -51.93 -0.36 0.84 16 30 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.08 0.66 7.60 -51.93 -0.39 0.27 16 32 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.11 1.19 7.45 -51.93 -0.39 0.80 16 38 H 0.12 2.53 7.29 -51.93 -0.38 2.15 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.73 6.96 -51.93 -0.36 0.37 16 41 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 42 H 0.05 1.07 4.79 -51.93 -0.25 0.82 16 43 H 0.05 1.18 4.65 -51.93 -0.24 0.94 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -34.20 331.39 -6.68 -40.87 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.70 Total: -0.55 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.04 Total: 0.28 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.37 Total: -54.59 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.29 Total: -13.82 kcal Atomic # 14 Polarization: 27.07 SS G_CDS: -4.27 Total: 22.80 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.20 -6.68 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950573292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.441 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds