Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46895 * 2 1 4 4 C 1.34781 * 120.00100 * 270.00564 * 3 2 1 5 5 O 1.21282 * 119.99705 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.99888 * 359.97438 * 4 3 2 7 7 C 1.53783 * 113.61634 * 279.13805 * 6 4 3 8 8 C 1.53951 * 87.01955 * 220.05072 * 7 6 4 9 9 O 1.42898 * 113.61205 * 270.79995 * 8 7 6 10 10 C 1.42905 * 114.00018 * 247.53383 * 9 8 7 11 11 C 1.53778 * 87.11445 * 25.36104 * 8 7 6 12 12 C 1.46499 * 119.99897 * 90.00142 * 3 2 1 13 13 C 1.53499 * 114.20527 * 60.00259 * 12 3 2 14 14 N 1.47066 * 87.98642 * 220.14732 * 13 12 3 15 15 C 1.36935 * 136.05905 * 207.08539 * 14 13 12 16 16 H 1.08000 * 119.99741 * 6.75982 * 15 14 13 17 17 C 1.38807 * 120.00115 * 186.75868 * 15 14 13 18 18 N 1.31618 * 120.00072 * 172.25744 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 352.25358 * 17 15 14 20 20 H 1.48504 * 109.47011 * 175.35922 * 19 17 15 21 21 H 1.48496 * 109.47781 * 295.36183 * 19 17 15 22 22 H 1.48498 * 109.46976 * 55.36546 * 19 17 15 23 23 C 1.47070 * 87.88467 * 27.33761 * 14 13 12 24 24 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46967 * 299.99391 * 1 2 3 26 26 H 1.09002 * 109.47914 * 59.99482 * 1 2 3 27 27 H 1.09003 * 109.46508 * 240.00654 * 2 1 3 28 28 H 1.08993 * 109.47601 * 119.99993 * 2 1 3 29 29 H 1.09004 * 112.84842 * 50.33564 * 6 4 3 30 30 H 1.09003 * 113.61352 * 334.57271 * 7 6 4 31 31 H 1.08999 * 113.61151 * 105.46771 * 7 6 4 32 32 H 1.09002 * 113.66608 * 139.93359 * 8 7 6 33 33 H 1.09000 * 109.46960 * 300.00355 * 10 9 8 34 34 H 1.09000 * 109.46900 * 60.00204 * 10 9 8 35 35 H 1.09002 * 109.47022 * 179.97438 * 10 9 8 36 36 H 1.08998 * 113.61552 * 220.08908 * 11 8 7 37 37 H 1.09004 * 113.61355 * 89.18491 * 11 8 7 38 38 H 1.09003 * 113.28482 * 193.06179 * 12 3 2 39 39 H 1.09001 * 113.46838 * 105.36625 * 13 12 3 40 40 H 1.09000 * 113.46246 * 334.92583 * 13 12 3 41 41 H 0.97000 * 119.99802 * 4.88275 * 18 17 15 42 42 H 1.09004 * 113.46146 * 87.44024 * 23 14 13 43 43 H 1.08996 * 113.47229 * 217.87578 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0167 -1.1672 5 8 2.6466 3.1603 -1.1671 6 6 1.9921 1.3061 -2.4723 7 6 3.1368 0.3697 -2.8938 8 6 2.9104 0.8714 -4.3315 9 8 1.9501 0.1046 -5.0607 10 6 2.5048 -0.6404 -6.1468 11 6 2.3313 2.1533 -3.7101 12 6 2.2624 2.0718 1.2687 13 6 3.3085 1.3928 2.1637 14 7 2.4508 1.7075 3.3162 15 6 2.6394 1.9288 4.6543 16 1 3.6402 1.9929 5.0552 17 6 1.5444 2.0707 5.4955 18 7 1.7189 2.1306 6.7986 19 14 -0.1770 2.1768 4.7778 20 1 -1.1716 2.2112 5.8801 21 1 -0.2984 3.4122 3.9629 22 1 -0.4296 0.9912 3.9201 23 6 1.3007 1.6736 2.4003 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.0076 0.8404 -2.5184 30 1 4.1056 0.6510 -2.4807 31 1 2.9086 -0.6874 -2.7581 32 1 3.8330 1.0344 -4.8885 33 1 2.9744 0.0434 -6.8540 34 1 3.2508 -1.3377 -5.7656 35 1 1.7123 -1.1953 -6.6490 36 1 1.4537 2.5340 -4.2326 37 1 3.0794 2.9232 -3.5206 38 1 2.4024 3.1467 1.1542 39 1 4.2670 1.9116 2.1815 40 1 3.4105 0.3237 1.9777 41 1 2.6159 2.1469 7.1676 42 1 0.8735 0.6785 2.2767 43 1 0.5486 2.4315 2.6196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950573292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = -10.932251 kcal Electronic energy + Delta-G solvation = -23163.663204 eV Core-core repulsion = 19825.521936 eV Total energy + Delta-G solvation = -3338.141268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87871 -40.48496 -39.08199 -36.59319 -36.41554 -34.49674 -31.52875 -29.93831 -27.99000 -27.12924 -26.80222 -26.65341 -24.65936 -24.07744 -21.90002 -20.64795 -19.83900 -19.66642 -18.58463 -17.89236 -17.25404 -16.87858 -16.52993 -16.43102 -15.99135 -15.69013 -15.22574 -15.08617 -14.80824 -14.45185 -14.19138 -13.68738 -13.58714 -13.48147 -13.29204 -13.20317 -13.16784 -12.92166 -12.61469 -12.30038 -12.24488 -12.21642 -11.92561 -11.66408 -11.43770 -11.38293 -11.22205 -11.03051 -10.70394 -10.39755 -9.63826 -9.25222 -8.70728 -5.53296 1.35175 1.45081 1.55635 1.64944 1.89658 2.49266 2.74144 2.92714 3.20478 3.41295 3.51512 3.56902 3.70513 3.81401 4.01278 4.11753 4.15422 4.30356 4.38178 4.40286 4.48416 4.49353 4.57961 4.61338 4.64259 4.68575 4.77723 4.83776 4.85579 4.92823 4.96415 5.04093 5.08809 5.10107 5.13518 5.22709 5.40381 5.60719 5.89308 6.31729 6.44261 6.64211 7.16064 7.25656 8.18908 8.84845 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036046 B = 0.003909 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.594990 B = 7160.859684 C = 7370.960863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 N -0.593 5.593 4 C 0.520 3.480 5 O -0.586 6.586 6 C -0.125 4.125 7 C -0.134 4.134 8 C 0.072 3.928 9 O -0.386 6.386 10 C 0.024 3.976 11 C -0.123 4.123 12 C 0.121 3.879 13 C 0.115 3.885 14 N -0.654 5.654 15 C -0.293 4.293 16 H 0.052 0.948 17 C -0.081 4.081 18 N -0.967 5.967 19 Si 1.107 2.893 20 H -0.301 1.301 21 H -0.282 1.282 22 H -0.251 1.251 23 C 0.090 3.910 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.247 0.753 42 H 0.077 0.923 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -9.375 -28.836 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 N -0.324 5.324 4 C 0.310 3.690 5 O -0.466 6.466 6 C -0.146 4.146 7 C -0.172 4.172 8 C 0.014 3.986 9 O -0.305 6.305 10 C -0.072 4.072 11 C -0.160 4.160 12 C 0.015 3.985 13 C -0.012 4.012 14 N -0.383 5.383 15 C -0.420 4.420 16 H 0.070 0.930 17 C -0.273 4.273 18 N -0.612 5.612 19 Si 0.932 3.068 20 H -0.229 1.229 21 H -0.210 1.210 22 H -0.175 1.175 23 C -0.035 4.035 24 H 0.110 0.890 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.127 -8.676 -28.146 29.530 hybrid contribution 2.264 0.315 0.598 2.362 sum 0.136 -8.361 -27.549 28.790 Atomic orbital electron populations 1.22340 0.95002 1.03837 1.02213 1.21882 0.95322 0.80697 1.04710 1.48068 1.64719 1.15174 1.04417 1.21268 0.75664 0.85960 0.86062 1.90654 1.47965 1.19992 1.87988 1.22822 1.02837 0.99137 0.89776 1.23429 0.97402 1.00288 0.96048 1.22996 0.92363 0.91390 0.91832 1.87857 1.34402 1.62552 1.45714 1.23011 1.00335 0.95430 0.88420 1.23110 1.02470 0.96466 0.93999 1.22858 0.96625 0.97442 0.81549 1.22901 0.94870 0.98678 0.84718 1.45728 1.05813 1.83217 1.03552 1.19970 0.94109 1.46248 0.81710 0.92961 1.27063 1.06866 0.99303 0.94068 1.71024 1.23400 1.55535 1.11203 0.83285 0.71559 0.78142 0.73770 1.22858 1.20950 1.17521 1.23447 0.92210 1.00088 0.87788 0.88958 0.93719 0.91645 0.87088 0.90212 0.85161 0.88994 0.88228 0.88732 0.93140 0.92914 0.88519 0.90207 0.88908 0.88050 0.94008 0.91676 0.94344 0.90551 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 9.86 71.98 0.71 -2.60 16 2 C 0.10 1.94 4.99 86.38 0.43 2.37 16 3 N -0.59 -16.56 2.72 -796.64 -2.16 -18.72 16 4 C 0.52 14.65 7.20 87.66 0.63 15.28 16 5 O -0.59 -21.54 15.42 -3.04 -0.05 -21.59 16 6 C -0.12 -2.40 2.73 -11.01 -0.03 -2.43 16 7 C -0.13 -1.94 6.69 31.18 0.21 -1.73 16 8 C 0.07 1.02 4.38 31.18 0.14 1.16 16 9 O -0.39 -5.77 10.63 -148.98 -1.58 -7.36 16 10 C 0.02 0.21 10.85 113.37 1.23 1.44 16 11 C -0.12 -2.28 7.23 31.12 0.22 -2.06 16 12 C 0.12 4.42 4.57 45.55 0.21 4.63 16 13 C 0.11 4.55 8.24 83.18 0.69 5.23 16 14 N -0.65 -32.48 3.70 -737.98 -2.73 -35.21 16 15 C -0.29 -17.50 11.08 84.03 0.93 -16.57 16 16 H 0.05 3.36 8.05 -2.91 -0.02 3.34 16 17 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 18 N -0.97 -63.38 13.70 21.65 0.30 -63.08 16 19 Si 1.11 54.32 25.13 68.60 1.72 56.04 16 20 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 21 H -0.28 -13.22 6.65 99.48 0.66 -12.56 16 22 H -0.25 -10.69 6.13 99.48 0.61 -10.08 16 23 C 0.09 3.68 4.42 83.27 0.37 4.05 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.04 1.06 6.10 -2.38 -0.01 1.04 16 26 H 0.06 1.12 7.24 -2.39 -0.02 1.11 16 27 H 0.11 1.58 5.66 -2.39 -0.01 1.56 16 28 H 0.08 1.75 6.17 -2.39 -0.01 1.73 16 29 H 0.13 2.18 6.96 -2.38 -0.02 2.16 16 30 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.10 1.12 7.60 -2.39 -0.02 1.10 16 32 H 0.09 1.04 7.87 -2.39 -0.02 1.02 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.99 7.45 -2.39 -0.02 1.98 16 38 H 0.10 4.19 7.29 -2.39 -0.02 4.17 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.28 6.96 -2.39 -0.02 2.27 16 41 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 42 H 0.08 2.82 4.79 -2.38 -0.01 2.81 16 43 H 0.04 1.86 4.65 -2.39 -0.01 1.85 16 Total: -1.00 -76.36 331.39 2.52 -73.84 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.82 Total: 11.77 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.20 Total: 4.30 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -4.59 Total: -117.02 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.63 Total: -28.95 kcal Atomic # 14 Polarization: 54.32 SS G_CDS: 1.72 Total: 56.04 kcal Total: -76.36 2.52 -73.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950573292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.910 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds