Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46802 * 2 1 4 4 C 1.34774 * 119.99552 * 84.35100 * 3 2 1 5 5 O 1.21291 * 119.99718 * 185.09786 * 4 3 2 6 6 C 1.50694 * 120.00588 * 5.09533 * 4 3 2 7 7 H 1.09004 * 110.56708 * 327.81582 * 6 4 3 8 8 C 1.54480 * 110.51081 * 90.48812 * 6 4 3 9 9 O 1.44427 * 104.80608 * 142.62847 * 8 6 4 10 10 C 1.44429 * 105.26994 * 319.48744 * 9 8 6 11 11 H 1.08998 * 110.46739 * 281.63364 * 10 9 8 12 12 C 1.53004 * 110.36894 * 159.33950 * 10 9 8 13 13 C 1.54479 * 104.80247 * 40.51450 * 10 9 8 14 14 C 1.46498 * 120.00099 * 264.34095 * 3 2 1 15 15 C 1.53952 * 113.74025 * 36.68214 * 14 3 2 16 16 N 1.47573 * 86.11391 * 222.04243 * 15 14 3 17 17 C 1.36943 * 134.49174 * 204.63585 * 16 15 14 18 18 H 1.07998 * 120.00255 * 174.68691 * 17 16 15 19 19 C 1.38821 * 119.99560 * 354.69180 * 17 16 15 20 20 N 1.31615 * 120.00170 * 5.00696 * 19 17 16 21 21 Si 1.86799 * 119.99616 * 185.01168 * 19 17 16 22 22 H 1.48503 * 109.47100 * 94.99316 * 21 19 17 23 23 H 1.48500 * 109.47261 * 214.99392 * 21 19 17 24 24 H 1.48499 * 109.47270 * 334.99672 * 21 19 17 25 25 C 1.47577 * 91.01878 * 24.63843 * 16 15 14 26 26 H 1.08997 * 109.47163 * 299.99712 * 1 2 3 27 27 H 1.09001 * 109.47163 * 60.00249 * 1 2 3 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47163 * 240.00288 * 2 1 3 30 30 H 1.09002 * 109.47263 * 120.00292 * 2 1 3 31 31 H 1.09000 * 110.37228 * 261.45612 * 8 6 4 32 32 H 1.09003 * 110.37277 * 23.68184 * 8 6 4 33 33 H 1.08994 * 109.47462 * 304.62095 * 12 10 9 34 34 H 1.09004 * 109.47089 * 184.61467 * 12 10 9 35 35 H 1.09005 * 109.46711 * 64.62500 * 12 10 9 36 36 H 1.09000 * 110.51259 * 94.66328 * 13 10 9 37 37 H 1.09008 * 110.50884 * 217.37507 * 13 10 9 38 38 H 1.09005 * 112.94252 * 168.40523 * 14 3 2 39 39 H 1.08996 * 113.76484 * 336.34628 * 15 14 3 40 40 H 1.09001 * 113.76606 * 107.73934 * 15 14 3 41 41 H 0.96998 * 119.99726 * 179.97438 * 20 19 17 42 42 H 1.08994 * 113.77273 * 221.05485 * 25 16 15 43 43 H 1.09002 * 113.86856 * 89.67207 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1344 2.0548 1.1616 5 8 2.4497 3.2260 1.1545 6 6 1.8727 1.3530 2.4691 7 1 1.1093 0.5848 2.3453 8 6 3.1763 0.7361 3.0228 9 8 3.0941 0.9216 4.4528 10 6 2.5451 2.2452 4.6337 11 1 3.3151 3.0014 4.4806 12 6 1.9352 2.3825 6.0302 13 6 1.4479 2.3685 3.5533 14 6 2.3803 2.0302 -1.2625 15 6 1.4700 1.6426 -2.4420 16 7 2.7080 1.5651 -3.2415 17 6 2.9982 1.6806 -4.5748 18 1 4.0256 1.6657 -4.9071 19 6 1.9715 1.8169 -5.4992 20 7 0.7268 1.9342 -5.0879 21 14 2.3568 1.8336 -7.3270 22 1 2.1951 0.4646 -7.8795 23 1 1.4265 2.7603 -8.0205 24 1 3.7550 2.2890 -7.5341 25 6 3.5077 1.3132 -2.0270 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.2267 -0.3253 2.7802 32 1 4.0442 1.2583 2.6200 33 1 1.1963 1.5959 6.1829 34 1 1.4539 3.3561 6.1224 35 1 2.7212 2.2934 6.7802 36 1 0.4745 2.1025 3.9654 37 1 1.4272 3.3784 3.1434 38 1 2.5341 3.1044 -1.1593 39 1 0.9692 0.6831 -2.3135 40 1 0.7939 2.4382 -2.7550 41 1 0.0096 2.0298 -5.7339 42 1 4.4586 1.8457 -2.0089 43 1 3.6068 0.2573 -1.7753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950673490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = -24.610336 kcal Electronic energy + Delta-G solvation = -23235.405741 eV Core-core repulsion = 19896.671348 eV Total energy + Delta-G solvation = -3338.734394 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62766 -39.03500 -37.47379 -35.10784 -32.50773 -32.19794 -31.59498 -30.22134 -27.58499 -26.19778 -24.86679 -24.14994 -23.45014 -22.18201 -21.35114 -19.50162 -18.39310 -17.65656 -16.87284 -16.49166 -15.78890 -15.56780 -15.23965 -14.96274 -14.69961 -13.97840 -13.77415 -13.49584 -13.38584 -12.96668 -12.59638 -12.56648 -12.40509 -12.22828 -12.04441 -11.65853 -11.57024 -11.49360 -11.23965 -11.02781 -10.93926 -10.88059 -10.82862 -10.72123 -10.28402 -10.08672 -9.94616 -9.60048 -9.48272 -8.83866 -8.21599 -6.94045 -5.83826 -3.15850 2.71514 3.16571 3.36728 3.42133 3.43926 3.71927 4.37860 4.42325 4.54339 4.58360 4.85260 4.97540 5.06383 5.06985 5.15562 5.20676 5.30079 5.39939 5.43406 5.48349 5.51607 5.55934 5.62126 5.72050 5.82337 5.83634 5.89662 5.91521 5.95016 6.04161 6.15942 6.34231 6.42194 6.55531 6.64228 6.77275 7.15174 7.29594 7.48472 7.72541 7.91289 8.38318 8.98461 9.64334 10.51751 11.33675 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040733 B = 0.003616 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.239933 B = 7741.877358 C = 7870.705909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.520 3.480 5 O -0.542 6.542 6 C -0.149 4.149 7 H 0.105 0.895 8 C 0.064 3.936 9 O -0.371 6.371 10 C 0.070 3.930 11 H 0.072 0.928 12 C -0.145 4.145 13 C -0.138 4.138 14 C 0.088 3.912 15 C 0.158 3.842 16 N -0.606 5.606 17 C -0.224 4.224 18 H 0.082 0.918 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.108 3.892 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.255 0.745 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 -3.897 18.618 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 N -0.324 5.324 4 C 0.307 3.693 5 O -0.420 6.420 6 C -0.170 4.170 7 H 0.123 0.877 8 C -0.013 4.013 9 O -0.290 6.290 10 C 0.013 3.987 11 H 0.090 0.910 12 C -0.203 4.203 13 C -0.176 4.176 14 C -0.015 4.015 15 C 0.032 3.968 16 N -0.332 5.332 17 C -0.352 4.352 18 H 0.100 0.900 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.020 4.020 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.001 -3.374 18.405 18.712 hybrid contribution -0.018 -0.137 -1.360 1.367 sum -0.017 -3.511 17.045 17.403 Atomic orbital electron populations 1.22326 0.95677 1.02272 1.03057 1.21566 0.94694 0.82756 1.03104 1.48179 1.63622 1.13919 1.06712 1.20265 0.77109 0.86831 0.85079 1.90667 1.48182 1.16031 1.87126 1.22790 1.00519 0.99661 0.94065 0.87661 1.23224 0.95382 1.01407 0.81292 1.89117 1.84772 1.33262 1.21816 1.23024 0.94655 0.85396 0.95646 0.90989 1.21802 1.01131 1.02380 0.94946 1.22989 0.99242 1.00904 0.94426 1.24074 0.98515 0.98459 0.80472 1.22655 0.90784 0.99072 0.84281 1.45642 1.03480 1.82659 1.01425 1.19002 0.92789 1.43689 0.79705 0.90015 1.24823 0.95200 1.02085 0.98132 1.69828 0.98540 1.55257 1.32851 0.86091 0.77421 0.77426 0.84791 1.21577 1.21637 1.20486 1.22981 0.95153 0.96910 0.86913 0.92880 0.90858 0.91637 0.89232 0.91141 0.88401 0.91653 0.91776 0.91047 0.91941 0.90268 0.88620 0.86754 0.94528 0.90921 0.93547 0.93579 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.75 37.15 0.36 -1.72 16 2 C 0.10 1.28 4.79 -4.04 -0.02 1.27 16 3 N -0.59 -9.28 2.70 -167.91 -0.45 -9.74 16 4 C 0.52 8.05 6.65 -10.99 -0.07 7.98 16 5 O -0.54 -10.34 15.12 5.55 0.08 -10.25 16 6 C -0.15 -1.73 2.57 -90.21 -0.23 -1.96 16 7 H 0.11 1.05 5.59 -51.93 -0.29 0.76 16 8 C 0.06 0.72 7.00 37.93 0.27 0.98 16 9 O -0.37 -4.46 11.34 -35.23 -0.40 -4.86 16 10 C 0.07 0.75 3.92 -25.95 -0.10 0.65 16 11 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.15 -1.19 9.52 37.16 0.35 -0.84 16 13 C -0.14 -1.52 6.15 -25.17 -0.15 -1.67 16 14 C 0.09 1.73 4.41 -70.16 -0.31 1.42 16 15 C 0.16 3.62 6.41 -2.98 -0.02 3.60 16 16 N -0.61 -15.38 3.70 -178.12 -0.66 -16.03 16 17 C -0.22 -6.25 10.70 -15.05 -0.16 -6.41 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -26.83 11.47 55.49 0.64 -26.20 16 21 Si 0.91 21.95 29.56 -169.99 -5.02 16.92 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.11 2.21 8.44 -2.98 -0.03 2.18 16 26 H 0.05 0.58 7.16 -51.93 -0.37 0.21 16 27 H 0.07 1.07 6.53 -51.93 -0.34 0.73 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.25 6.15 -51.93 -0.32 0.93 16 30 H 0.07 0.69 6.30 -51.93 -0.33 0.36 16 31 H 0.10 0.89 7.90 -51.93 -0.41 0.48 16 32 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 37 H 0.10 1.22 6.82 -51.92 -0.35 0.86 16 38 H 0.11 2.47 7.22 -51.93 -0.38 2.09 16 39 H 0.04 0.82 5.31 -51.93 -0.28 0.54 16 40 H 0.07 1.89 7.30 -51.93 -0.38 1.51 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.67 7.06 -51.93 -0.37 0.30 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -32.03 335.09 -7.68 -39.71 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.71 Total: 0.17 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.21 Total: 5.22 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.48 Total: -51.97 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.32 Total: -15.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.03 -7.68 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950673490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.104 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds