Wall clock time and date at job start Tue Mar 31 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46802 * 2 1 4 4 C 1.34774 * 119.99552 * 84.35100 * 3 2 1 5 5 O 1.21291 * 119.99718 * 185.09786 * 4 3 2 6 6 C 1.50694 * 120.00588 * 5.09533 * 4 3 2 7 7 H 1.09004 * 110.56708 * 327.81582 * 6 4 3 8 8 C 1.54480 * 110.51081 * 90.48812 * 6 4 3 9 9 O 1.44427 * 104.80608 * 142.62847 * 8 6 4 10 10 C 1.44429 * 105.26994 * 319.48744 * 9 8 6 11 11 H 1.08998 * 110.46739 * 281.63364 * 10 9 8 12 12 C 1.53004 * 110.36894 * 159.33950 * 10 9 8 13 13 C 1.54479 * 104.80247 * 40.51450 * 10 9 8 14 14 C 1.46498 * 120.00099 * 264.34095 * 3 2 1 15 15 C 1.53952 * 113.74025 * 36.68214 * 14 3 2 16 16 N 1.47573 * 86.11391 * 222.04243 * 15 14 3 17 17 C 1.36943 * 134.49174 * 204.63585 * 16 15 14 18 18 H 1.07998 * 120.00255 * 174.68691 * 17 16 15 19 19 C 1.38821 * 119.99560 * 354.69180 * 17 16 15 20 20 N 1.31615 * 120.00170 * 5.00696 * 19 17 16 21 21 Si 1.86799 * 119.99616 * 185.01168 * 19 17 16 22 22 H 1.48503 * 109.47100 * 94.99316 * 21 19 17 23 23 H 1.48500 * 109.47261 * 214.99392 * 21 19 17 24 24 H 1.48499 * 109.47270 * 334.99672 * 21 19 17 25 25 C 1.47577 * 91.01878 * 24.63843 * 16 15 14 26 26 H 1.08997 * 109.47163 * 299.99712 * 1 2 3 27 27 H 1.09001 * 109.47163 * 60.00249 * 1 2 3 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47163 * 240.00288 * 2 1 3 30 30 H 1.09002 * 109.47263 * 120.00292 * 2 1 3 31 31 H 1.09000 * 110.37228 * 261.45612 * 8 6 4 32 32 H 1.09003 * 110.37277 * 23.68184 * 8 6 4 33 33 H 1.08994 * 109.47462 * 304.62095 * 12 10 9 34 34 H 1.09004 * 109.47089 * 184.61467 * 12 10 9 35 35 H 1.09005 * 109.46711 * 64.62500 * 12 10 9 36 36 H 1.09000 * 110.51259 * 94.66328 * 13 10 9 37 37 H 1.09008 * 110.50884 * 217.37507 * 13 10 9 38 38 H 1.09005 * 112.94252 * 168.40523 * 14 3 2 39 39 H 1.08996 * 113.76484 * 336.34628 * 15 14 3 40 40 H 1.09001 * 113.76606 * 107.73934 * 15 14 3 41 41 H 0.96998 * 119.99726 * 179.97438 * 20 19 17 42 42 H 1.08994 * 113.77273 * 221.05485 * 25 16 15 43 43 H 1.09002 * 113.86856 * 89.67207 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1344 2.0548 1.1616 5 8 2.4497 3.2260 1.1545 6 6 1.8727 1.3530 2.4691 7 1 1.1093 0.5848 2.3453 8 6 3.1763 0.7361 3.0228 9 8 3.0941 0.9216 4.4528 10 6 2.5451 2.2452 4.6337 11 1 3.3151 3.0014 4.4806 12 6 1.9352 2.3825 6.0302 13 6 1.4479 2.3685 3.5533 14 6 2.3803 2.0302 -1.2625 15 6 1.4700 1.6426 -2.4420 16 7 2.7080 1.5651 -3.2415 17 6 2.9982 1.6806 -4.5748 18 1 4.0256 1.6657 -4.9071 19 6 1.9715 1.8169 -5.4992 20 7 0.7268 1.9342 -5.0879 21 14 2.3568 1.8336 -7.3270 22 1 2.1951 0.4646 -7.8795 23 1 1.4265 2.7603 -8.0205 24 1 3.7550 2.2890 -7.5341 25 6 3.5077 1.3132 -2.0270 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.2267 -0.3253 2.7802 32 1 4.0442 1.2583 2.6200 33 1 1.1963 1.5959 6.1829 34 1 1.4539 3.3561 6.1224 35 1 2.7212 2.2934 6.7802 36 1 0.4745 2.1025 3.9654 37 1 1.4272 3.3784 3.1434 38 1 2.5341 3.1044 -1.1593 39 1 0.9692 0.6831 -2.3135 40 1 0.7939 2.4382 -2.7550 41 1 0.0096 2.0298 -5.7339 42 1 4.4586 1.8457 -2.0089 43 1 3.6068 0.2573 -1.7753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950673490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:16 Heat of formation + Delta-G solvation = -45.728323 kcal Electronic energy + Delta-G solvation = -23236.321486 eV Core-core repulsion = 19896.671348 eV Total energy + Delta-G solvation = -3339.650139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80819 -40.27472 -38.92882 -36.48795 -34.21802 -33.28229 -32.57998 -31.42209 -29.45542 -27.03000 -26.64186 -25.63987 -24.64363 -23.48859 -22.28317 -20.95798 -19.71916 -19.04777 -18.53566 -17.78179 -16.94997 -16.67638 -16.61252 -16.15493 -16.09076 -15.72469 -15.04062 -14.74214 -14.41436 -14.28605 -13.90007 -13.75265 -13.42072 -13.36278 -13.24501 -13.01520 -12.94157 -12.86045 -12.66304 -12.46780 -12.36898 -12.10212 -11.99210 -11.96634 -11.77358 -11.70241 -11.54403 -10.88944 -10.81865 -10.79605 -9.61760 -8.96545 -7.95675 -5.29185 1.44940 1.46461 1.48952 1.55734 1.89813 2.46759 2.86602 3.22751 3.38693 3.42746 3.59661 3.72511 3.82267 3.98926 4.05531 4.17808 4.21753 4.27602 4.38746 4.41751 4.49650 4.52822 4.65041 4.69889 4.73593 4.82753 4.84837 4.89449 4.93455 4.97343 4.99957 5.10838 5.17523 5.26308 5.29899 5.42020 5.45654 5.69991 5.80856 5.87357 6.45428 6.87195 7.12327 7.55197 8.49236 9.21638 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040733 B = 0.003616 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.239933 B = 7741.877358 C = 7870.705909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 N -0.591 5.591 4 C 0.519 3.481 5 O -0.584 6.584 6 C -0.139 4.139 7 H 0.133 0.867 8 C 0.064 3.936 9 O -0.379 6.379 10 C 0.066 3.934 11 H 0.059 0.941 12 C -0.141 4.141 13 C -0.137 4.137 14 C 0.112 3.888 15 C 0.165 3.835 16 N -0.637 5.637 17 C -0.238 4.238 18 H 0.085 0.915 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.980 3.020 22 H -0.284 1.284 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.115 3.885 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.049 0.951 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 -5.785 20.210 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.322 5.322 4 C 0.308 3.692 5 O -0.465 6.465 6 C -0.161 4.161 7 H 0.151 0.849 8 C -0.013 4.013 9 O -0.298 6.298 10 C 0.009 3.991 11 H 0.077 0.923 12 C -0.198 4.198 13 C -0.175 4.175 14 C 0.007 3.993 15 C 0.039 3.961 16 N -0.364 5.364 17 C -0.366 4.366 18 H 0.103 0.897 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.193 1.193 25 C -0.011 4.011 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.204 -5.292 20.039 20.727 hybrid contribution -0.055 0.477 -1.781 1.845 sum 0.149 -4.815 18.258 18.883 Atomic orbital electron populations 1.22291 0.95019 1.03668 1.01981 1.21846 0.95220 0.80793 1.04576 1.48152 1.63646 1.15127 1.05301 1.20963 0.75802 0.86379 0.86042 1.90656 1.49899 1.18154 1.87764 1.22823 1.01749 1.00032 0.91454 0.84917 1.23310 0.94233 1.02821 0.80926 1.89119 1.84903 1.33656 1.22104 1.23112 0.94284 0.84716 0.97001 0.92288 1.21800 1.01326 1.03398 0.93292 1.23009 1.00598 0.99600 0.94305 1.23308 0.96881 0.97318 0.81775 1.22506 0.90066 0.98056 0.85467 1.45958 1.05351 1.83218 1.01863 1.19379 0.93085 1.42887 0.81253 0.89703 1.25663 0.95134 1.02445 1.02407 1.70012 0.99283 1.56684 1.33824 0.85036 0.77476 0.77231 0.79436 1.21086 1.22139 1.19264 1.23076 0.94969 0.98285 0.84773 0.91551 0.94317 0.88996 0.90368 0.86963 0.85523 0.93218 0.91004 0.89816 0.91640 0.87932 0.90809 0.89286 0.93706 0.95022 0.94110 0.93283 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 9.75 71.98 0.70 -2.97 16 2 C 0.10 2.19 4.79 86.38 0.41 2.60 16 3 N -0.59 -17.89 2.70 -803.55 -2.17 -20.07 16 4 C 0.52 15.54 6.65 87.66 0.58 16.12 16 5 O -0.58 -22.63 15.12 -3.06 -0.05 -22.67 16 6 C -0.14 -2.87 2.57 -10.53 -0.03 -2.89 16 7 H 0.13 2.03 5.59 -2.38 -0.01 2.02 16 8 C 0.06 1.25 7.00 72.49 0.51 1.75 16 9 O -0.38 -8.11 11.34 -148.98 -1.69 -9.80 16 10 C 0.07 1.29 3.92 31.10 0.12 1.41 16 11 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 12 C -0.14 -1.98 9.52 71.98 0.69 -1.29 16 13 C -0.14 -2.75 6.15 31.61 0.19 -2.56 16 14 C 0.11 4.47 4.41 46.75 0.21 4.68 16 15 C 0.17 7.81 6.41 86.48 0.55 8.36 16 16 N -0.64 -32.87 3.70 -717.45 -2.65 -35.52 16 17 C -0.24 -13.42 10.70 84.03 0.90 -12.52 16 18 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 19 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 20 N -0.95 -57.12 11.47 21.65 0.25 -56.88 16 21 Si 0.98 45.64 29.56 68.60 2.03 47.66 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.11 4.68 8.44 86.48 0.73 5.41 16 26 H 0.07 1.24 7.16 -2.39 -0.02 1.22 16 27 H 0.04 1.10 6.53 -2.39 -0.02 1.09 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.99 6.15 -2.39 -0.01 1.97 16 30 H 0.11 1.64 6.30 -2.39 -0.02 1.62 16 31 H 0.13 1.72 7.90 -2.39 -0.02 1.70 16 32 H 0.05 1.12 7.86 -2.39 -0.02 1.11 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.10 1.57 7.87 -2.39 -0.02 1.56 16 37 H 0.07 1.85 6.82 -2.38 -0.02 1.83 16 38 H 0.09 4.02 7.22 -2.38 -0.02 4.00 16 39 H 0.05 2.04 5.31 -2.39 -0.01 2.03 16 40 H 0.03 1.74 7.30 -2.39 -0.02 1.72 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.20 7.06 -2.39 -0.02 2.19 16 Total: -1.00 -71.71 335.09 2.75 -68.96 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.00 Total: 13.33 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.04 Total: 14.98 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.58 Total: -112.46 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.74 Total: -32.47 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.71 2.75 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950673490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.232 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds