Wall clock time and date at job start Tue Mar 31 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47012 * 2 1 4 4 C 1.34778 * 120.00383 * 272.10139 * 3 2 1 5 5 O 1.21287 * 119.99979 * 185.52910 * 4 3 2 6 6 C 1.50694 * 119.99872 * 5.53076 * 4 3 2 7 7 H 1.09006 * 110.75378 * 42.51542 * 6 4 3 8 8 C 1.54380 * 110.84686 * 279.04666 * 6 4 3 9 9 O 1.43242 * 107.59276 * 220.45082 * 8 6 4 10 10 C 1.43653 * 109.96657 * 358.28922 * 9 8 6 11 11 H 1.08990 * 110.30943 * 265.41172 * 10 9 8 12 12 C 1.53008 * 110.30709 * 143.33927 * 10 9 8 13 13 C 1.54941 * 105.13478 * 24.42746 * 10 9 8 14 14 C 1.46504 * 119.99962 * 91.82349 * 3 2 1 15 15 C 1.53944 * 113.73813 * 41.89684 * 14 3 2 16 16 N 1.47809 * 86.03883 * 222.08348 * 15 14 3 17 17 C 1.36936 * 134.46151 * 204.64776 * 16 15 14 18 18 H 1.08004 * 119.99903 * 179.87173 * 17 16 15 19 19 C 1.38812 * 119.99684 * 359.86038 * 17 16 15 20 20 N 1.31613 * 120.00245 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99949 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47286 * 90.00392 * 21 19 17 23 23 H 1.48497 * 109.47228 * 210.00589 * 21 19 17 24 24 H 1.48505 * 109.47038 * 330.00425 * 21 19 17 25 25 C 1.47585 * 91.04960 * 24.55236 * 16 15 14 26 26 H 1.09001 * 109.47045 * 170.19529 * 1 2 3 27 27 H 1.08994 * 109.47187 * 290.19114 * 1 2 3 28 28 H 1.09001 * 109.47453 * 50.19640 * 1 2 3 29 29 H 1.09004 * 109.47161 * 240.00311 * 2 1 3 30 30 H 1.08994 * 109.47071 * 120.00354 * 2 1 3 31 31 H 1.09000 * 109.83305 * 339.96447 * 8 6 4 32 32 H 1.09003 * 109.83332 * 100.84880 * 8 6 4 33 33 H 1.09004 * 109.46491 * 61.45498 * 12 10 9 34 34 H 1.08999 * 109.46709 * 181.45363 * 12 10 9 35 35 H 1.08994 * 109.47103 * 301.45601 * 12 10 9 36 36 H 1.09002 * 111.12810 * 205.63350 * 13 10 9 37 37 H 1.09003 * 111.13042 * 81.47442 * 13 10 9 38 38 H 1.08997 * 112.94911 * 173.49219 * 14 3 2 39 39 H 1.08996 * 113.77283 * 336.35051 * 15 14 3 40 40 H 1.09005 * 113.76849 * 107.74745 * 15 14 3 41 41 H 0.97002 * 120.00596 * 179.97438 * 20 19 17 42 42 H 1.09001 * 113.77040 * 221.15526 * 25 16 15 43 43 H 1.08994 * 113.77026 * 89.75321 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2026 2.0309 -1.1664 5 8 2.7007 3.1367 -1.1724 6 6 1.7897 1.3833 -2.4629 7 1 0.8207 0.8949 -2.3594 8 6 2.8616 0.3810 -2.9423 9 8 2.9859 0.5260 -4.3619 10 6 2.0540 1.5101 -4.8379 11 1 1.1357 1.0297 -5.1753 12 6 2.6755 2.3237 -5.9751 13 6 1.7697 2.4216 -3.6177 14 6 2.3005 2.0583 1.2681 15 6 3.0196 1.1692 2.2988 16 7 2.1036 1.7615 3.2963 17 6 2.1559 1.9545 4.6509 18 1 1.3302 2.4282 5.1612 19 6 3.2700 1.5411 5.3684 20 7 4.2763 0.9641 4.7466 21 14 3.3410 1.8037 7.2165 22 1 2.7662 0.6213 7.9070 23 1 4.7538 1.9840 7.6369 24 1 2.5595 3.0146 7.5748 25 6 1.1116 2.0633 2.2461 26 1 -0.3633 -1.0127 -0.1750 27 1 -0.3633 0.3547 0.9644 28 1 -0.3634 0.6579 -0.7895 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8153 0.6022 -2.4631 32 1 2.5526 -0.6355 -2.6987 33 1 2.9160 1.6610 -6.8065 34 1 1.9673 3.0823 -6.3082 35 1 3.5858 2.8070 -5.6206 36 1 0.7924 2.8970 -3.7016 37 1 2.5565 3.1653 -3.4909 38 1 2.7625 3.0364 1.1340 39 1 2.8665 0.1017 2.1410 40 1 4.0664 1.4321 2.4514 41 1 5.0550 0.6755 5.2478 42 1 0.6378 3.0387 2.3566 43 1 0.3967 1.2590 2.0728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950673491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:19 Heat of formation + Delta-G solvation = -20.168864 kcal Electronic energy + Delta-G solvation = -23241.460669 eV Core-core repulsion = 19902.918872 eV Total energy + Delta-G solvation = -3338.541797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63388 -39.06525 -37.50262 -35.10655 -32.54006 -32.21697 -31.59622 -30.29100 -27.58545 -26.26595 -25.07646 -24.14791 -23.38326 -21.99194 -21.38721 -19.53395 -18.51127 -17.59252 -16.96132 -16.57761 -16.22413 -15.50080 -14.99751 -14.66306 -14.58913 -13.99636 -13.83940 -13.70444 -13.42461 -13.00474 -12.66957 -12.62717 -12.51683 -12.32305 -12.01613 -11.83097 -11.64059 -11.37775 -11.24774 -11.11908 -10.98581 -10.89873 -10.71430 -10.62911 -10.26225 -10.09872 -9.72322 -9.58783 -9.46681 -8.82258 -8.21275 -6.93659 -5.81636 -3.14515 2.70920 3.15075 3.37435 3.42302 3.44332 3.60421 4.22422 4.41555 4.49469 4.67439 4.84669 4.89528 4.96811 5.03274 5.16012 5.18436 5.25264 5.39485 5.43350 5.46910 5.49437 5.51995 5.63756 5.70062 5.77251 5.79967 5.83702 5.92562 5.95592 6.06737 6.13887 6.28545 6.48551 6.62173 6.73385 6.81916 7.16636 7.30326 7.48850 7.72329 7.92114 8.37596 8.99144 9.65503 10.52150 11.35470 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037265 B = 0.003643 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.200493 B = 7683.436708 C = 7802.907386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 N -0.593 5.593 4 C 0.523 3.477 5 O -0.540 6.540 6 C -0.149 4.149 7 H 0.107 0.893 8 C 0.068 3.932 9 O -0.378 6.378 10 C 0.076 3.924 11 H 0.071 0.929 12 C -0.151 4.151 13 C -0.134 4.134 14 C 0.090 3.910 15 C 0.156 3.844 16 N -0.605 5.605 17 C -0.224 4.224 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.103 3.897 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.044 0.956 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 -2.437 -18.221 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 N -0.325 5.325 4 C 0.309 3.691 5 O -0.417 6.417 6 C -0.171 4.171 7 H 0.125 0.875 8 C -0.009 4.009 9 O -0.297 6.297 10 C 0.018 3.982 11 H 0.089 0.911 12 C -0.208 4.208 13 C -0.172 4.172 14 C -0.014 4.014 15 C 0.030 3.970 16 N -0.332 5.332 17 C -0.351 4.351 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.024 4.024 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.570 -1.968 -17.993 19.255 hybrid contribution -0.267 -0.058 1.323 1.351 sum -6.836 -2.025 -16.670 18.131 Atomic orbital electron populations 1.22425 0.96018 1.01871 1.03146 1.21710 0.94464 0.82911 1.03755 1.48152 1.64346 1.13793 1.06179 1.20143 0.78366 0.85767 0.84778 1.90678 1.43711 1.20389 1.86912 1.22984 1.01426 0.98174 0.94479 0.87462 1.23028 0.98350 0.97941 0.81624 1.88422 1.60403 1.60245 1.20658 1.22993 0.92207 0.88419 0.94547 0.91112 1.21884 1.01730 0.99598 0.97622 1.23271 1.04359 0.97960 0.91624 1.24046 0.98860 0.98777 0.79704 1.22687 0.97125 0.93997 0.83231 1.45687 1.16008 1.68973 1.02506 1.18987 1.02163 1.33624 0.80372 0.90074 1.24799 0.96545 1.00677 0.98270 1.69807 1.07364 1.44995 1.34485 0.86093 0.76971 0.77812 0.84714 1.21573 1.21559 1.20558 1.23181 0.93142 0.98387 0.87646 0.91733 0.91040 0.92760 0.90958 0.88693 0.90691 0.90514 0.91905 0.91182 0.91683 0.89700 0.88423 0.86664 0.94988 0.90485 0.93524 0.93744 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.71 37.16 0.36 -1.54 16 2 C 0.09 1.19 5.28 -4.05 -0.02 1.16 16 3 N -0.59 -9.31 2.70 -167.91 -0.45 -9.76 16 4 C 0.52 8.15 6.79 -10.99 -0.07 8.07 16 5 O -0.54 -10.43 15.15 5.55 0.08 -10.35 16 6 C -0.15 -1.72 2.41 -89.83 -0.22 -1.93 16 7 H 0.11 1.02 6.12 -51.93 -0.32 0.70 16 8 C 0.07 0.77 6.60 37.88 0.25 1.02 16 9 O -0.38 -4.60 11.04 -35.23 -0.39 -4.99 16 10 C 0.08 0.74 4.08 -25.70 -0.10 0.64 16 11 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 12 C -0.15 -1.27 9.62 37.16 0.36 -0.92 16 13 C -0.13 -1.45 5.82 -24.48 -0.14 -1.59 16 14 C 0.09 1.76 4.42 -70.14 -0.31 1.45 16 15 C 0.16 3.60 7.02 -2.84 -0.02 3.58 16 16 N -0.61 -15.37 3.70 -177.88 -0.66 -16.03 16 17 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 18 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.04 11.39 55.49 0.63 -26.41 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.10 2.10 8.47 -2.96 -0.03 2.08 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.90 5.52 -51.93 -0.29 0.61 16 28 H 0.05 0.54 6.80 -51.93 -0.35 0.19 16 29 H 0.07 0.73 5.26 -51.93 -0.27 0.46 16 30 H 0.09 1.35 5.73 -51.93 -0.30 1.05 16 31 H 0.07 0.96 7.81 -51.93 -0.41 0.55 16 32 H 0.08 0.72 7.01 -51.93 -0.36 0.35 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.26 7.13 -51.93 -0.37 0.89 16 38 H 0.12 2.51 7.19 -51.93 -0.37 2.13 16 39 H 0.03 0.73 5.92 -51.93 -0.31 0.42 16 40 H 0.08 2.03 7.17 -51.93 -0.37 1.65 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.81 4.87 -51.93 -0.25 0.56 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -32.33 330.92 -7.50 -39.83 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.48 Total: 0.38 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -0.20 Total: 5.34 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.48 Total: -52.20 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.30 Total: -15.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.33 -7.50 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950673491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.661 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds