Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47245 * 2 1 4 4 C 1.34772 * 120.00623 * 275.58367 * 3 2 1 5 5 O 1.21289 * 119.99515 * 356.57087 * 4 3 2 6 6 C 1.50691 * 120.00578 * 176.57111 * 4 3 2 7 7 H 1.09000 * 110.80540 * 56.36958 * 6 4 3 8 8 C 1.54999 * 110.90890 * 292.74375 * 6 4 3 9 9 O 1.44374 * 103.49392 * 204.77608 * 8 6 4 10 10 C 1.43741 * 106.97326 * 40.06259 * 9 8 6 11 11 H 1.08992 * 109.88288 * 92.91359 * 10 9 8 12 12 C 1.53002 * 109.87641 * 213.91201 * 10 9 8 13 13 C 1.54096 * 107.29419 * 333.48345 * 10 9 8 14 14 C 1.46498 * 119.99697 * 95.57848 * 3 2 1 15 15 C 1.53505 * 114.20469 * 62.40621 * 14 3 2 16 16 N 1.47071 * 87.98336 * 220.34413 * 15 14 3 17 17 C 1.36943 * 136.05642 * 207.08631 * 16 15 14 18 18 H 1.07998 * 119.99802 * 355.22739 * 17 16 15 19 19 C 1.38804 * 119.99578 * 175.22929 * 17 16 15 20 20 N 1.31616 * 120.00899 * 5.30723 * 19 17 16 21 21 Si 1.86807 * 119.99703 * 185.30818 * 19 17 16 22 22 H 1.48506 * 109.47184 * 94.99363 * 21 19 17 23 23 H 1.48492 * 109.47505 * 214.99608 * 21 19 17 24 24 H 1.48505 * 109.46716 * 334.99670 * 21 19 17 25 25 C 1.47066 * 87.88758 * 27.11775 * 16 15 14 26 26 H 1.08994 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46501 * 299.99402 * 1 2 3 28 28 H 1.09001 * 109.47052 * 59.99472 * 1 2 3 29 29 H 1.09005 * 109.46686 * 240.00746 * 2 1 3 30 30 H 1.08997 * 109.47469 * 120.00806 * 2 1 3 31 31 H 1.08998 * 110.61706 * 323.28193 * 8 6 4 32 32 H 1.09003 * 110.61657 * 86.27061 * 8 6 4 33 33 H 1.09004 * 109.47379 * 58.54137 * 12 10 9 34 34 H 1.09001 * 109.47500 * 178.54295 * 12 10 9 35 35 H 1.08999 * 109.47302 * 298.54502 * 12 10 9 36 36 H 1.09004 * 110.49035 * 243.35386 * 13 10 9 37 37 H 1.09002 * 110.48683 * 120.71011 * 13 10 9 38 38 H 1.09000 * 113.41564 * 195.60515 * 14 3 2 39 39 H 1.08992 * 113.46706 * 105.56594 * 15 14 3 40 40 H 1.08997 * 113.46710 * 335.12081 * 15 14 3 41 41 H 0.97000 * 120.00226 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.46701 * 87.65496 * 25 16 15 43 43 H 1.09000 * 113.47069 * 218.09689 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1360 2.0545 -1.1615 5 8 1.8971 1.4975 -2.2121 6 6 2.5644 3.4992 -1.1551 7 1 3.5218 3.6170 -0.6476 8 6 1.4796 4.3949 -0.5043 9 8 1.7205 5.6935 -1.0875 10 6 2.0339 5.4792 -2.4739 11 1 1.1274 5.5533 -3.0745 12 6 3.0548 6.5178 -2.9430 13 6 2.6288 4.0629 -2.5955 14 6 2.3789 2.0306 1.2627 15 6 3.5405 1.3579 2.0073 16 7 2.8041 1.5897 3.2590 17 6 3.1307 1.7629 4.5776 18 1 4.1578 1.6649 4.8969 19 6 2.1417 2.0643 5.5037 20 7 0.8782 2.0809 5.1356 21 14 2.6040 2.4464 7.2729 22 1 2.7203 3.9166 7.4477 23 1 1.5550 1.9211 8.1832 24 1 3.9045 1.8054 7.5941 25 6 1.5625 1.5530 2.4717 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 0.4823 4.0378 -0.7610 32 1 1.6091 4.4299 0.5775 33 1 3.9552 6.4434 -2.3331 34 1 3.3071 6.3335 -3.9873 35 1 2.6296 7.5164 -2.8427 36 1 3.6617 4.1113 -2.9404 37 1 2.0282 3.4535 -3.2709 38 1 2.4669 3.1141 1.1829 39 1 4.4760 1.9137 1.9448 40 1 3.6595 0.3024 1.7628 41 1 0.1872 2.2920 5.7827 42 1 1.1547 0.5494 2.3508 43 1 0.8162 2.2746 2.8040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950673492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = -19.431835 kcal Electronic energy + Delta-G solvation = -23540.390709 eV Core-core repulsion = 20201.880871 eV Total energy + Delta-G solvation = -3338.509837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62270 -39.01066 -37.84268 -34.65776 -32.54268 -32.17838 -31.97756 -30.09022 -27.59687 -26.10609 -24.74327 -24.06619 -23.54314 -22.19026 -21.01698 -19.95565 -18.40546 -17.72138 -16.77893 -16.24189 -15.64014 -15.50126 -15.33656 -14.91994 -14.76506 -13.96211 -13.67181 -13.53379 -13.37392 -12.86016 -12.66345 -12.59478 -12.27644 -12.16427 -12.00138 -11.72536 -11.62886 -11.32908 -11.19342 -10.97636 -10.94607 -10.83391 -10.76079 -10.70266 -10.34559 -10.14959 -9.72771 -9.58855 -9.52596 -8.88436 -8.22471 -7.02372 -5.88852 -3.22212 2.73314 3.13899 3.34177 3.39284 3.41158 3.82749 4.34961 4.39246 4.66585 4.69310 4.93242 5.09840 5.12485 5.14570 5.22639 5.28434 5.36096 5.42774 5.49085 5.58902 5.61297 5.62350 5.67178 5.81955 5.85570 5.89617 5.92763 5.99307 6.08902 6.12471 6.17107 6.32330 6.39200 6.51417 6.78255 6.86002 7.02207 7.11012 7.39550 7.71072 7.85052 8.34595 8.91749 9.58483 10.48239 11.28578 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.004973 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.137310 B = 5628.583727 C = 6591.015248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.589 5.589 4 C 0.525 3.475 5 O -0.550 6.550 6 C -0.145 4.145 7 H 0.111 0.889 8 C 0.060 3.940 9 O -0.370 6.370 10 C 0.070 3.930 11 H 0.068 0.932 12 C -0.150 4.150 13 C -0.137 4.137 14 C 0.066 3.934 15 C 0.107 3.893 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.083 0.917 19 C -0.003 4.003 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.147 3.853 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.256 0.744 42 H 0.035 0.965 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 2.957 -13.982 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.320 5.320 4 C 0.313 3.687 5 O -0.428 6.428 6 C -0.167 4.167 7 H 0.129 0.871 8 C -0.017 4.017 9 O -0.289 6.289 10 C 0.012 3.988 11 H 0.086 0.914 12 C -0.207 4.207 13 C -0.175 4.175 14 C -0.038 4.038 15 C -0.021 4.021 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.101 0.899 19 C -0.200 4.200 20 N -0.564 5.564 21 Si 0.744 3.256 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.021 3.979 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.534 2.917 -14.036 14.418 hybrid contribution 0.219 -0.203 1.053 1.094 sum 1.753 2.714 -12.983 13.379 Atomic orbital electron populations 1.22159 0.95822 1.01998 1.02575 1.21387 0.94542 0.82314 1.02787 1.48044 1.63496 1.13912 1.06531 1.20178 0.77041 0.88034 0.83471 1.90636 1.51446 1.69761 1.31002 1.22858 1.02026 0.93016 0.98783 0.87128 1.23636 0.96813 0.81945 0.99308 1.88914 1.90467 1.27236 1.22250 1.22771 0.97563 0.94568 0.83875 0.91436 1.21929 0.98933 0.98885 1.01000 1.22953 1.03074 0.95433 0.95994 1.24040 1.00135 0.97828 0.81790 1.22826 0.95045 0.97428 0.86805 1.45315 1.02496 1.83278 1.01838 1.18910 0.93743 1.41601 0.80583 0.89884 1.24811 0.95185 1.01620 0.98372 1.69812 0.98681 1.53821 1.34049 0.86075 0.77377 0.78236 0.83898 1.21353 1.21628 1.20525 1.22543 0.91811 0.98905 0.84651 0.91974 0.91539 0.92704 0.90702 0.89818 0.91612 0.87355 0.91787 0.91363 0.91975 0.90098 0.88772 0.86540 0.93748 0.94620 0.93449 0.94697 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.98 37.16 0.37 -1.98 16 2 C 0.11 1.67 5.16 -4.04 -0.02 1.65 16 3 N -0.59 -9.20 2.72 -165.88 -0.45 -9.65 16 4 C 0.53 8.14 6.99 -10.99 -0.08 8.06 16 5 O -0.55 -9.72 15.10 5.55 0.08 -9.63 16 6 C -0.15 -1.93 2.49 -89.77 -0.22 -2.15 16 7 H 0.11 1.40 7.83 -51.93 -0.41 0.99 16 8 C 0.06 0.81 6.52 38.21 0.25 1.06 16 9 O -0.37 -5.19 11.19 -35.23 -0.39 -5.59 16 10 C 0.07 0.80 4.05 -26.16 -0.11 0.69 16 11 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 12 C -0.15 -1.40 9.37 37.16 0.35 -1.05 16 13 C -0.14 -1.61 6.06 -25.21 -0.15 -1.76 16 14 C 0.07 1.15 4.12 -67.81 -0.28 0.87 16 15 C 0.11 2.05 8.24 -8.49 -0.07 1.98 16 16 N -0.60 -14.54 3.78 -184.75 -0.70 -15.24 16 17 C -0.22 -5.92 10.74 -15.06 -0.16 -6.09 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 20 N -0.92 -26.01 11.49 55.49 0.64 -25.38 16 21 Si 0.91 21.35 29.56 -169.99 -5.02 16.32 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.15 3.17 6.32 -8.50 -0.05 3.12 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.01 6.91 -51.93 -0.36 0.66 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.10 7.55 -51.93 -0.39 0.71 16 30 H 0.08 1.28 5.98 -51.93 -0.31 0.97 16 31 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.11 1.52 6.20 -51.93 -0.32 1.20 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 37 H 0.09 1.21 6.86 -51.93 -0.36 0.85 16 38 H 0.12 1.92 4.36 -51.93 -0.23 1.70 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.68 7.22 -51.93 -0.38 0.30 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.04 0.76 5.48 -51.93 -0.28 0.48 16 43 H 0.08 1.88 7.04 -51.93 -0.37 1.52 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -30.25 335.00 -7.79 -38.04 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.72 Total: 1.86 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.27 Total: 4.22 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.51 Total: -50.26 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.31 Total: -15.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.25 -7.79 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950673492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.607 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds