Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47245 * 2 1 4 4 C 1.34772 * 120.00623 * 275.58367 * 3 2 1 5 5 O 1.21289 * 119.99515 * 356.57087 * 4 3 2 6 6 C 1.50691 * 120.00578 * 176.57111 * 4 3 2 7 7 H 1.09000 * 110.80540 * 56.36958 * 6 4 3 8 8 C 1.54999 * 110.90890 * 292.74375 * 6 4 3 9 9 O 1.44374 * 103.49392 * 204.77608 * 8 6 4 10 10 C 1.43741 * 106.97326 * 40.06259 * 9 8 6 11 11 H 1.08992 * 109.88288 * 92.91359 * 10 9 8 12 12 C 1.53002 * 109.87641 * 213.91201 * 10 9 8 13 13 C 1.54096 * 107.29419 * 333.48345 * 10 9 8 14 14 C 1.46498 * 119.99697 * 95.57848 * 3 2 1 15 15 C 1.53505 * 114.20469 * 62.40621 * 14 3 2 16 16 N 1.47071 * 87.98336 * 220.34413 * 15 14 3 17 17 C 1.36943 * 136.05642 * 207.08631 * 16 15 14 18 18 H 1.07998 * 119.99802 * 355.22739 * 17 16 15 19 19 C 1.38804 * 119.99578 * 175.22929 * 17 16 15 20 20 N 1.31616 * 120.00899 * 5.30723 * 19 17 16 21 21 Si 1.86807 * 119.99703 * 185.30818 * 19 17 16 22 22 H 1.48506 * 109.47184 * 94.99363 * 21 19 17 23 23 H 1.48492 * 109.47505 * 214.99608 * 21 19 17 24 24 H 1.48505 * 109.46716 * 334.99670 * 21 19 17 25 25 C 1.47066 * 87.88758 * 27.11775 * 16 15 14 26 26 H 1.08994 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46501 * 299.99402 * 1 2 3 28 28 H 1.09001 * 109.47052 * 59.99472 * 1 2 3 29 29 H 1.09005 * 109.46686 * 240.00746 * 2 1 3 30 30 H 1.08997 * 109.47469 * 120.00806 * 2 1 3 31 31 H 1.08998 * 110.61706 * 323.28193 * 8 6 4 32 32 H 1.09003 * 110.61657 * 86.27061 * 8 6 4 33 33 H 1.09004 * 109.47379 * 58.54137 * 12 10 9 34 34 H 1.09001 * 109.47500 * 178.54295 * 12 10 9 35 35 H 1.08999 * 109.47302 * 298.54502 * 12 10 9 36 36 H 1.09004 * 110.49035 * 243.35386 * 13 10 9 37 37 H 1.09002 * 110.48683 * 120.71011 * 13 10 9 38 38 H 1.09000 * 113.41564 * 195.60515 * 14 3 2 39 39 H 1.08992 * 113.46706 * 105.56594 * 15 14 3 40 40 H 1.08997 * 113.46710 * 335.12081 * 15 14 3 41 41 H 0.97000 * 120.00226 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.46701 * 87.65496 * 25 16 15 43 43 H 1.09000 * 113.47069 * 218.09689 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1360 2.0545 -1.1615 5 8 1.8971 1.4975 -2.2121 6 6 2.5644 3.4992 -1.1551 7 1 3.5218 3.6170 -0.6476 8 6 1.4796 4.3949 -0.5043 9 8 1.7205 5.6935 -1.0875 10 6 2.0339 5.4792 -2.4739 11 1 1.1274 5.5533 -3.0745 12 6 3.0548 6.5178 -2.9430 13 6 2.6288 4.0629 -2.5955 14 6 2.3789 2.0306 1.2627 15 6 3.5405 1.3579 2.0073 16 7 2.8041 1.5897 3.2590 17 6 3.1307 1.7629 4.5776 18 1 4.1578 1.6649 4.8969 19 6 2.1417 2.0643 5.5037 20 7 0.8782 2.0809 5.1356 21 14 2.6040 2.4464 7.2729 22 1 2.7203 3.9166 7.4477 23 1 1.5550 1.9211 8.1832 24 1 3.9045 1.8054 7.5941 25 6 1.5625 1.5530 2.4717 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 0.4823 4.0378 -0.7610 32 1 1.6091 4.4299 0.5775 33 1 3.9552 6.4434 -2.3331 34 1 3.3071 6.3335 -3.9873 35 1 2.6296 7.5164 -2.8427 36 1 3.6617 4.1113 -2.9404 37 1 2.0282 3.4535 -3.2709 38 1 2.4669 3.1141 1.1829 39 1 4.4760 1.9137 1.9448 40 1 3.6595 0.3024 1.7628 41 1 0.1872 2.2920 5.7827 42 1 1.1547 0.5494 2.3508 43 1 0.8162 2.2746 2.8040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950673492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = -38.164071 kcal Electronic energy + Delta-G solvation = -23541.202999 eV Core-core repulsion = 20201.880871 eV Total energy + Delta-G solvation = -3339.322128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87454 -40.26977 -39.25577 -36.10948 -34.07795 -33.56137 -33.02206 -31.29591 -29.43971 -27.02887 -26.39900 -25.42683 -25.09501 -23.35936 -22.02908 -21.49269 -19.71886 -19.07791 -18.49617 -17.51269 -16.84209 -16.80544 -16.60570 -16.42320 -15.99673 -15.69732 -14.94924 -14.80745 -14.48495 -14.35260 -13.87495 -13.81468 -13.49156 -13.26554 -13.25653 -13.06582 -12.93666 -12.92234 -12.73488 -12.52511 -12.25765 -12.09578 -11.98931 -11.93730 -11.81579 -11.73097 -11.36379 -10.90466 -10.81125 -10.71468 -9.62024 -8.94976 -7.92575 -5.26215 1.46987 1.48751 1.50125 1.58520 1.86317 2.48265 2.80745 3.28786 3.31284 3.45896 3.57196 3.71309 3.75661 3.97755 4.02987 4.14347 4.17332 4.22633 4.35074 4.38375 4.46587 4.52359 4.62700 4.68131 4.76484 4.83486 4.84173 4.86490 4.95382 4.97835 5.02278 5.12350 5.21365 5.28698 5.32607 5.35842 5.47647 5.59377 5.88018 5.89681 6.38168 6.89190 7.06971 7.58231 8.55545 9.24779 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.004973 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.137310 B = 5628.583727 C = 6591.015248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.588 5.588 4 C 0.528 3.472 5 O -0.568 6.568 6 C -0.144 4.144 7 H 0.122 0.878 8 C 0.062 3.938 9 O -0.386 6.386 10 C 0.064 3.936 11 H 0.073 0.927 12 C -0.147 4.147 13 C -0.130 4.130 14 C 0.101 3.899 15 C 0.109 3.891 16 N -0.633 5.633 17 C -0.229 4.229 18 H 0.087 0.913 19 C -0.058 4.058 20 N -0.949 5.949 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.268 1.268 25 C 0.148 3.852 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.250 0.750 42 H 0.032 0.968 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 3.297 -15.033 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.012 4.012 3 N -0.319 5.319 4 C 0.317 3.683 5 O -0.448 6.448 6 C -0.165 4.165 7 H 0.140 0.860 8 C -0.014 4.014 9 O -0.305 6.305 10 C 0.007 3.993 11 H 0.091 0.909 12 C -0.204 4.204 13 C -0.168 4.168 14 C -0.004 4.004 15 C -0.018 4.018 16 N -0.360 5.360 17 C -0.357 4.357 18 H 0.105 0.895 19 C -0.252 4.252 20 N -0.597 5.597 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.192 1.192 25 C 0.022 3.978 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.880 3.249 -15.124 15.735 hybrid contribution -0.197 -0.352 1.293 1.354 sum 2.683 2.898 -13.831 14.384 Atomic orbital electron populations 1.22082 0.95267 1.03016 1.01421 1.21455 0.94979 0.81924 1.02850 1.48005 1.63604 1.14241 1.06032 1.20479 0.76278 0.88708 0.82801 1.90632 1.52215 1.70430 1.31484 1.22893 1.02207 0.91259 1.00138 0.85978 1.23537 0.96796 0.82200 0.98914 1.88905 1.90626 1.27272 1.23733 1.22972 0.98522 0.95068 0.82712 0.90898 1.21937 0.98094 0.98170 1.02186 1.22933 1.04032 0.95194 0.94612 1.23525 0.97473 0.98161 0.81218 1.22944 0.95880 0.98247 0.84730 1.45600 1.04496 1.83554 1.02323 1.19271 0.93961 1.40393 0.82089 0.89496 1.25582 0.95202 1.02305 1.02105 1.69987 0.99454 1.55384 1.34861 0.85088 0.77224 0.77806 0.79366 1.21255 1.22315 1.19224 1.22462 0.91012 0.98009 0.86340 0.89978 0.93200 0.93149 0.90014 0.90230 0.92041 0.88139 0.91904 0.89215 0.91895 0.88296 0.89772 0.85456 0.92189 0.93684 0.94138 0.95013 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 9.98 71.98 0.72 -3.67 16 2 C 0.11 3.16 5.16 86.38 0.45 3.60 16 3 N -0.59 -17.68 2.72 -797.11 -2.17 -19.85 16 4 C 0.53 15.56 6.99 87.66 0.61 16.17 16 5 O -0.57 -19.17 15.10 -3.06 -0.05 -19.22 16 6 C -0.14 -3.55 2.49 -10.24 -0.03 -3.58 16 7 H 0.12 2.77 7.83 -2.39 -0.02 2.76 16 8 C 0.06 1.65 6.52 72.67 0.47 2.12 16 9 O -0.39 -10.36 11.19 -148.98 -1.67 -12.02 16 10 C 0.06 1.35 4.05 30.97 0.13 1.47 16 11 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 12 C -0.15 -2.37 9.37 71.98 0.67 -1.70 16 13 C -0.13 -2.78 6.06 31.58 0.19 -2.58 16 14 C 0.10 3.40 4.12 45.47 0.19 3.59 16 15 C 0.11 4.01 8.24 83.19 0.69 4.70 16 16 N -0.63 -30.43 3.78 -738.42 -2.79 -33.22 16 17 C -0.23 -12.24 10.74 84.03 0.90 -11.34 16 18 H 0.09 4.44 7.83 -2.91 -0.02 4.41 16 19 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 20 N -0.95 -54.96 11.49 21.65 0.25 -54.71 16 21 Si 0.98 44.06 29.56 68.60 2.03 46.09 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 C 0.15 6.46 6.32 83.19 0.53 6.98 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.53 6.91 -2.39 -0.02 1.51 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 2.27 7.55 -2.38 -0.02 2.25 16 30 H 0.08 2.36 5.98 -2.39 -0.01 2.35 16 31 H 0.06 1.65 8.04 -2.39 -0.02 1.64 16 32 H 0.10 2.78 6.20 -2.39 -0.01 2.77 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.76 7.70 -2.39 -0.02 1.74 16 37 H 0.08 2.00 6.86 -2.39 -0.02 1.99 16 38 H 0.13 4.07 4.36 -2.39 -0.01 4.06 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.62 7.22 -2.39 -0.02 1.60 16 41 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.03 1.41 5.48 -2.39 -0.01 1.39 16 43 H 0.05 2.27 7.04 -2.39 -0.02 2.25 16 Total: -1.00 -64.17 335.00 2.58 -61.58 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 1.00 Total: 18.31 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.98 Total: 13.05 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -4.71 Total: -107.79 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.71 Total: -31.24 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.17 2.58 -61.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950673492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.421 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds