Wall clock time and date at job start Tue Mar 31 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46695 * 2 1 4 4 C 1.34771 * 120.00325 * 90.00008 * 3 2 1 5 5 O 1.21278 * 120.00296 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99731 * 0.02562 * 4 3 2 7 7 H 1.09000 * 109.86904 * 304.54788 * 6 4 3 8 8 C 1.54095 * 109.88115 * 65.71246 * 6 4 3 9 9 C 1.54992 * 104.25415 * 121.58932 * 8 6 4 10 10 H 1.08997 * 110.84206 * 262.54325 * 9 8 6 11 11 C 1.53001 * 111.04885 * 138.88039 * 9 8 6 12 12 C 1.54993 * 102.00784 * 20.66714 * 9 8 6 13 13 O 1.43747 * 109.88012 * 183.54450 * 6 4 3 14 14 C 1.46503 * 119.99672 * 269.99985 * 3 2 1 15 15 C 1.53945 * 113.74366 * 36.67832 * 14 3 2 16 16 N 1.47582 * 86.11470 * 222.04869 * 15 14 3 17 17 C 1.36944 * 134.49031 * 204.64274 * 16 15 14 18 18 H 1.07994 * 119.99753 * 173.48137 * 17 16 15 19 19 C 1.38814 * 119.99670 * 353.48102 * 17 16 15 20 20 N 1.31612 * 120.00476 * 5.06130 * 19 17 16 21 21 Si 1.86800 * 119.99651 * 185.06862 * 19 17 16 22 22 H 1.48501 * 109.47420 * 94.98414 * 21 19 17 23 23 H 1.48506 * 109.47058 * 214.98481 * 21 19 17 24 24 H 1.48505 * 109.47157 * 334.98489 * 21 19 17 25 25 C 1.47581 * 91.01698 * 24.63879 * 16 15 14 26 26 H 1.08998 * 109.47271 * 299.99781 * 1 2 3 27 27 H 1.08994 * 109.47315 * 60.00570 * 1 2 3 28 28 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46681 * 239.99739 * 2 1 3 30 30 H 1.08996 * 109.46690 * 119.99846 * 2 1 3 31 31 H 1.09001 * 110.48756 * 240.12549 * 8 6 4 32 32 H 1.08995 * 110.48989 * 2.64120 * 8 6 4 33 33 H 1.09003 * 109.47192 * 305.86127 * 11 9 8 34 34 H 1.08998 * 109.46781 * 65.86123 * 11 9 8 35 35 H 1.08990 * 109.46872 * 185.85657 * 11 9 8 36 36 H 1.09001 * 110.61419 * 204.59442 * 12 9 8 37 37 H 1.09001 * 110.62117 * 81.75684 * 12 9 8 38 38 H 1.09003 * 112.94097 * 168.41207 * 14 3 2 39 39 H 1.08994 * 113.76753 * 336.34635 * 15 14 3 40 40 H 1.08994 * 113.77191 * 107.74332 * 15 14 3 41 41 H 0.97001 * 120.00490 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.76560 * 221.05457 * 25 16 15 43 43 H 1.09002 * 113.86836 * 89.67608 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1671 5 8 2.6475 3.1599 1.1671 6 6 1.9923 1.3060 2.4722 7 1 0.9669 0.9377 2.5026 8 6 2.9788 0.1325 2.6277 9 6 3.7345 0.4412 3.9453 10 1 4.6901 0.9237 3.7403 11 6 3.9330 -0.8286 4.7754 12 6 2.7620 1.4185 4.6534 13 8 2.2214 2.2051 3.5702 14 6 2.2624 2.0718 -1.2688 15 6 1.2459 1.7217 -2.3706 16 7 2.4042 1.6723 -3.2838 17 6 2.5694 1.8319 -4.6339 18 1 3.5624 1.8489 -5.0580 19 6 1.4605 1.9718 -5.4570 20 7 0.2565 2.0512 -4.9314 21 14 1.6770 2.0473 -7.3109 22 1 1.4916 0.6910 -7.8866 23 1 0.6700 2.9727 -7.8896 24 1 3.0417 2.5381 -7.6303 25 6 3.3129 1.3819 -2.1578 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4392 -0.8108 2.7126 32 1 3.6701 0.1010 1.7857 33 1 2.9697 -1.3132 4.9341 34 1 4.5991 -1.5090 4.2449 35 1 4.3718 -0.5680 5.7385 36 1 3.3007 2.0533 5.3570 37 1 1.9694 0.8700 5.1622 38 1 2.4269 3.1422 -1.1451 39 1 0.7577 0.7577 -2.2277 40 1 0.5448 2.5260 -2.5933 41 1 -0.5184 2.1493 -5.5066 42 1 4.2622 1.9150 -2.2107 43 1 3.4333 0.3185 -1.9511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950915229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:07 Heat of formation + Delta-G solvation = -18.706300 kcal Electronic energy + Delta-G solvation = -23367.679883 eV Core-core repulsion = 20029.201507 eV Total energy + Delta-G solvation = -3338.478376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61082 -38.98343 -37.31785 -35.11828 -33.73560 -32.15783 -30.39690 -30.16855 -27.42947 -26.57064 -24.86405 -24.29556 -23.43506 -22.31556 -20.89313 -19.93692 -18.50267 -17.23762 -16.81153 -16.52058 -16.13773 -15.41278 -15.21419 -14.72594 -14.36233 -14.18942 -13.85184 -13.74478 -13.36764 -13.14477 -12.74029 -12.60157 -12.44138 -12.26221 -11.80325 -11.64611 -11.53417 -11.49119 -11.24710 -11.09808 -10.97094 -10.87887 -10.73953 -10.60388 -10.24443 -10.09032 -10.03404 -9.56455 -9.19073 -8.80355 -8.15787 -6.90648 -5.81667 -3.13389 2.82004 3.05123 3.38253 3.43542 3.45615 3.85056 4.19340 4.43183 4.47094 4.54638 4.66918 4.94193 5.01555 5.07605 5.17520 5.22934 5.29142 5.33748 5.40445 5.45119 5.46893 5.49108 5.56839 5.66823 5.74112 5.76381 5.86434 5.93486 5.97134 6.07165 6.18298 6.38046 6.46497 6.58542 6.64671 6.85105 7.18032 7.35088 7.51569 7.77358 7.93743 8.48828 9.00917 9.66715 10.54855 11.36065 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036626 B = 0.003755 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.299842 B = 7454.574306 C = 7489.211337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.095 3.905 3 N -0.593 5.593 4 C 0.511 3.489 5 O -0.526 6.526 6 C 0.061 3.939 7 H 0.093 0.907 8 C -0.143 4.143 9 C -0.127 4.127 10 H 0.088 0.912 11 C -0.141 4.141 12 C 0.048 3.952 13 O -0.347 6.347 14 C 0.091 3.909 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.224 4.224 18 H 0.082 0.918 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.108 3.892 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.114 0.886 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 -8.681 19.028 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.297 3.703 5 O -0.402 6.402 6 C 0.000 4.000 7 H 0.110 0.890 8 C -0.181 4.181 9 C -0.146 4.146 10 H 0.106 0.894 11 C -0.198 4.198 12 C -0.029 4.029 13 O -0.265 6.265 14 C -0.013 4.013 15 C 0.031 3.969 16 N -0.332 5.332 17 C -0.352 4.352 18 H 0.100 0.900 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.019 4.019 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.095 -7.763 18.677 20.461 hybrid contribution -0.031 -0.414 -1.112 1.187 sum 3.064 -8.177 17.565 19.616 Atomic orbital electron populations 1.22385 0.95712 1.02215 1.03348 1.21733 0.94887 0.82869 1.03354 1.48114 1.64773 1.14022 1.05802 1.20399 0.78132 0.86845 0.84919 1.90693 1.44863 1.17582 1.87056 1.22692 1.00132 0.89854 0.87353 0.88965 1.23103 0.98257 0.97799 0.98955 1.22785 0.99987 0.97017 0.94777 0.89369 1.21715 1.02115 0.96353 0.99645 1.23689 0.95348 0.93473 0.90383 1.89018 1.84343 1.31201 1.21953 1.24053 0.99515 0.97922 0.79776 1.22713 0.91323 0.99404 0.83461 1.45641 1.03666 1.81783 1.02117 1.18999 0.92989 1.43322 0.79850 0.90038 1.24825 0.95132 1.02105 0.98143 1.69827 0.97404 1.55442 1.33777 0.86098 0.77265 0.77404 0.85007 1.21592 1.21651 1.20492 1.22975 0.94716 0.96880 0.87359 0.92943 0.90423 0.91750 0.89492 0.90561 0.89404 0.89626 0.92255 0.92053 0.92179 0.88775 0.91941 0.86803 0.94179 0.91046 0.93552 0.93595 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.87 37.16 0.37 -1.84 16 2 C 0.09 1.21 4.87 -4.04 -0.02 1.20 16 3 N -0.59 -9.73 2.69 -167.91 -0.45 -10.18 16 4 C 0.51 8.75 6.86 -10.99 -0.08 8.68 16 5 O -0.53 -11.40 16.01 -14.00 -0.22 -11.62 16 6 C 0.06 0.79 3.04 -27.31 -0.08 0.71 16 7 H 0.09 1.03 6.97 -51.93 -0.36 0.67 16 8 C -0.14 -1.37 4.31 -25.11 -0.11 -1.48 16 9 C -0.13 -1.09 3.73 -88.51 -0.33 -1.42 16 10 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.14 -0.85 9.19 37.16 0.34 -0.51 16 12 C 0.05 0.46 7.17 38.21 0.27 0.73 16 13 O -0.35 -5.04 10.74 -54.80 -0.59 -5.63 16 14 C 0.09 1.84 4.40 -70.15 -0.31 1.53 16 15 C 0.16 3.65 6.24 -2.97 -0.02 3.63 16 16 N -0.61 -15.57 3.70 -178.11 -0.66 -16.22 16 17 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 18 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -27.00 11.51 55.49 0.64 -26.36 16 21 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.11 2.26 8.46 -2.97 -0.03 2.23 16 26 H 0.05 0.60 7.16 -51.93 -0.37 0.23 16 27 H 0.08 1.19 5.85 -51.93 -0.30 0.88 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.21 6.36 -51.93 -0.33 0.88 16 30 H 0.08 0.75 4.44 -51.93 -0.23 0.51 16 31 H 0.09 0.62 7.24 -51.93 -0.38 0.25 16 32 H 0.09 0.90 7.43 -51.93 -0.39 0.51 16 33 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.48 8.05 -51.93 -0.42 0.07 16 38 H 0.11 2.55 7.24 -51.93 -0.38 2.18 16 39 H 0.04 0.90 5.01 -51.93 -0.26 0.64 16 40 H 0.07 1.88 7.35 -51.93 -0.38 1.50 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.03 0.67 6.98 -51.93 -0.36 0.30 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -33.82 333.03 -8.19 -42.01 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.66 Total: -0.83 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.24 Total: 6.76 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.47 Total: -52.76 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.81 Total: -17.25 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.82 -8.19 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950915229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.306 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds