Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47445 * 2 1 4 4 C 1.34777 * 119.99634 * 275.24580 * 3 2 1 5 5 O 1.21284 * 119.99779 * 175.29787 * 4 3 2 6 6 C 1.50700 * 120.00230 * 355.29827 * 4 3 2 7 7 H 1.08998 * 109.82553 * 50.71006 * 6 4 3 8 8 C 1.54381 * 109.83057 * 289.82011 * 6 4 3 9 9 C 1.55450 * 102.18984 * 219.18381 * 8 6 4 10 10 H 1.09002 * 111.09323 * 276.11006 * 9 8 6 11 11 C 1.52993 * 111.15001 * 151.99404 * 9 8 6 12 12 C 1.54949 * 100.98682 * 34.03811 * 9 8 6 13 13 O 1.43244 * 109.83048 * 171.59578 * 6 4 3 14 14 C 1.46495 * 119.99989 * 95.23985 * 3 2 1 15 15 C 1.53499 * 114.20202 * 60.00482 * 14 3 2 16 16 N 1.47070 * 87.98223 * 220.34090 * 15 14 3 17 17 C 1.36932 * 136.05596 * 207.08694 * 16 15 14 18 18 H 1.07999 * 120.00270 * 5.34465 * 17 16 15 19 19 C 1.38815 * 119.99838 * 185.35317 * 17 16 15 20 20 N 1.31612 * 120.00113 * 5.30078 * 19 17 16 21 21 Si 1.86803 * 119.99865 * 185.29568 * 19 17 16 22 22 H 1.48502 * 109.47435 * 265.00003 * 21 19 17 23 23 H 1.48499 * 109.47191 * 25.00694 * 21 19 17 24 24 H 1.48502 * 109.46793 * 145.00100 * 21 19 17 25 25 C 1.47066 * 87.88505 * 27.34473 * 16 15 14 26 26 H 1.08994 * 109.47569 * 60.00161 * 1 2 3 27 27 H 1.09005 * 109.47400 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47235 * 299.99989 * 1 2 3 29 29 H 1.09005 * 109.47235 * 240.00011 * 2 1 3 30 30 H 1.09001 * 109.47495 * 120.00255 * 2 1 3 31 31 H 1.09000 * 110.84635 * 337.32086 * 8 6 4 32 32 H 1.08996 * 110.84908 * 100.93971 * 8 6 4 33 33 H 1.09000 * 109.47299 * 306.91582 * 11 9 8 34 34 H 1.08999 * 109.47311 * 66.92201 * 11 9 8 35 35 H 1.09007 * 109.47121 * 186.91991 * 11 9 8 36 36 H 1.09004 * 110.30809 * 204.69554 * 12 9 8 37 37 H 1.08995 * 110.39602 * 82.56665 * 12 9 8 38 38 H 1.08998 * 113.27954 * 193.06781 * 14 3 2 39 39 H 1.09007 * 113.46902 * 105.56668 * 15 14 3 40 40 H 1.08992 * 113.52556 * 335.13070 * 15 14 3 41 41 H 0.97002 * 120.00220 * 180.02562 * 20 19 17 42 42 H 1.09004 * 113.46868 * 87.43286 * 25 16 15 43 43 H 1.08997 * 113.46902 * 217.87660 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1424 2.0520 -1.1624 5 8 2.4647 3.2212 -1.1563 6 6 1.8806 1.3494 -2.4696 7 1 0.9181 0.8395 -2.4289 8 6 3.0034 0.3273 -2.7488 9 6 3.2157 0.4833 -4.2809 10 1 2.4981 -0.1176 -4.8395 11 6 4.6510 0.1325 -4.6778 12 6 2.9395 1.9969 -4.4646 13 8 1.8819 2.3001 -3.5410 14 6 2.3718 2.0331 1.2634 15 6 3.4901 1.3285 2.0438 16 7 2.7328 1.6026 3.2745 17 6 3.0339 1.7805 4.5984 18 1 4.0650 1.8118 4.9183 19 6 2.0138 1.9206 5.5294 20 7 0.7594 1.7785 5.1575 21 14 2.4217 2.3106 7.3101 22 1 2.4815 1.0496 8.0920 23 1 3.7363 2.9979 7.3778 24 1 1.3713 3.1947 7.8762 25 6 1.5093 1.5949 2.4585 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9101 0.5885 -2.2033 32 1 2.6782 -0.6833 -2.5019 33 1 5.3475 0.7113 -4.0712 34 1 4.8236 -0.9312 -4.5141 35 1 4.8044 0.3676 -5.7311 36 1 2.6197 2.2018 -5.4864 37 1 3.8299 2.5775 -4.2239 38 1 2.5028 3.1112 1.1699 39 1 4.4465 1.8494 1.9976 40 1 3.5774 0.2664 1.8154 41 1 0.0465 1.8767 5.8080 42 1 1.0736 0.6029 2.3387 43 1 0.7782 2.3428 2.7654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950915232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = -18.543318 kcal Electronic energy + Delta-G solvation = -23347.965915 eV Core-core repulsion = 20009.494607 eV Total energy + Delta-G solvation = -3338.471308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61790 -39.04265 -37.38366 -35.14795 -33.75675 -32.19296 -30.41814 -30.17790 -27.49098 -26.62212 -24.63592 -24.32618 -23.49091 -22.31079 -21.03730 -19.68831 -18.40373 -17.78610 -16.80231 -16.41418 -16.01660 -15.74314 -15.08308 -14.71851 -14.27503 -14.01715 -13.88484 -13.69807 -13.44862 -13.11352 -12.82370 -12.59889 -12.42906 -12.24336 -11.79993 -11.72977 -11.53579 -11.44677 -11.27020 -11.11873 -11.07125 -10.94728 -10.75282 -10.70992 -10.20222 -10.16802 -10.10332 -9.45523 -9.07172 -8.82118 -8.11324 -6.93826 -5.82813 -3.14302 2.79294 3.10667 3.37925 3.43174 3.45473 3.78703 4.11392 4.42180 4.45152 4.51058 4.79219 4.87929 4.99135 5.08077 5.17613 5.25129 5.30704 5.33572 5.41214 5.45589 5.51428 5.55877 5.57409 5.63140 5.66809 5.76159 5.85730 5.93682 5.97403 6.06958 6.18434 6.38320 6.43623 6.57938 6.74246 6.83764 7.13114 7.33547 7.47135 7.77319 7.91536 8.48567 8.98792 9.65108 10.57503 11.35833 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.003802 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.223738 B = 7362.673984 C = 7504.276860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 N -0.591 5.591 4 C 0.500 3.500 5 O -0.529 6.529 6 C 0.065 3.935 7 H 0.104 0.896 8 C -0.141 4.141 9 C -0.127 4.127 10 H 0.089 0.911 11 C -0.142 4.142 12 C 0.052 3.948 13 O -0.353 6.353 14 C 0.086 3.914 15 C 0.106 3.894 16 N -0.603 5.603 17 C -0.219 4.219 18 H 0.083 0.917 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.279 1.279 24 H -0.289 1.289 25 C 0.154 3.846 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.042 0.958 40 H 0.033 0.967 41 H 0.255 0.745 42 H 0.037 0.963 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -7.355 -19.443 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 N -0.325 5.325 4 C 0.287 3.713 5 O -0.405 6.405 6 C 0.004 3.996 7 H 0.122 0.878 8 C -0.179 4.179 9 C -0.145 4.145 10 H 0.108 0.892 11 C -0.199 4.199 12 C -0.024 4.024 13 O -0.271 6.271 14 C -0.018 4.018 15 C -0.021 4.021 16 N -0.329 5.329 17 C -0.347 4.347 18 H 0.101 0.899 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.204 1.204 24 H -0.215 1.215 25 C 0.028 3.972 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.640 -6.476 -19.081 20.323 hybrid contribution 0.167 -0.229 1.121 1.156 sum 2.807 -6.706 -17.961 19.376 Atomic orbital electron populations 1.22315 0.95712 1.02228 1.03134 1.21690 0.94750 0.82908 1.03307 1.48023 1.64304 1.13855 1.06333 1.20896 0.77710 0.87332 0.85393 1.90684 1.46763 1.15946 1.87081 1.22717 1.00680 0.89399 0.86850 0.87820 1.23252 0.98842 0.99490 0.96323 1.22904 0.98913 0.97114 0.95609 0.89223 1.21674 0.94615 1.01962 1.01636 1.23527 0.91215 0.94007 0.93677 1.88512 1.51910 1.52385 1.34290 1.23776 0.99141 0.98378 0.80521 1.22822 0.95384 0.96858 0.87083 1.45328 1.03300 1.82053 1.02204 1.18919 0.92699 1.43145 0.79905 0.89902 1.24831 0.95267 1.01979 0.98172 1.69839 0.98116 1.54839 1.33650 0.86065 0.77407 0.77822 0.84248 1.21574 1.20434 1.21525 1.22478 0.91416 0.98701 0.84629 0.92856 0.91619 0.90870 0.90942 0.89225 0.89677 0.88868 0.92102 0.92001 0.92118 0.89474 0.91851 0.86420 0.93963 0.94960 0.93541 0.94510 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.85 37.16 0.37 -1.76 16 2 C 0.10 1.23 4.83 -4.04 -0.02 1.21 16 3 N -0.59 -9.65 2.72 -165.74 -0.45 -10.10 16 4 C 0.50 8.48 6.84 -10.99 -0.08 8.40 16 5 O -0.53 -11.32 16.05 -13.97 -0.22 -11.54 16 6 C 0.06 0.83 3.08 -27.16 -0.08 0.74 16 7 H 0.10 1.14 6.36 -51.93 -0.33 0.81 16 8 C -0.14 -1.34 5.03 -24.71 -0.12 -1.46 16 9 C -0.13 -1.01 3.69 -88.29 -0.33 -1.34 16 10 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 11 C -0.14 -0.93 9.31 37.15 0.35 -0.58 16 12 C 0.05 0.54 7.26 38.19 0.28 0.82 16 13 O -0.35 -5.09 10.58 -54.76 -0.58 -5.67 16 14 C 0.09 1.73 4.60 -67.68 -0.31 1.42 16 15 C 0.11 2.23 8.23 -8.50 -0.07 2.16 16 16 N -0.60 -15.60 3.77 -184.61 -0.70 -16.30 16 17 C -0.22 -6.19 10.74 -15.06 -0.16 -6.35 16 18 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -27.16 11.74 55.49 0.65 -26.51 16 21 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.15 3.60 6.14 -8.37 -0.05 3.55 16 26 H 0.05 0.60 6.87 -51.93 -0.36 0.25 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.09 6.73 -51.93 -0.35 0.74 16 29 H 0.07 0.69 4.73 -51.93 -0.25 0.45 16 30 H 0.09 1.25 5.96 -51.93 -0.31 0.94 16 31 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 32 H 0.09 0.67 6.75 -51.93 -0.35 0.32 16 33 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.69 8.03 -51.93 -0.42 0.28 16 38 H 0.12 2.64 7.26 -51.93 -0.38 2.26 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.64 7.05 -51.93 -0.37 0.27 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.04 0.84 5.42 -51.93 -0.28 0.56 16 43 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -33.97 334.29 -8.29 -42.26 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.68 Total: -0.83 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.33 Total: 6.56 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.50 Total: -52.91 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.80 Total: -17.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.97 -8.29 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950915232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.714 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds