Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47445 * 2 1 4 4 C 1.34777 * 119.99634 * 275.24580 * 3 2 1 5 5 O 1.21284 * 119.99779 * 175.29787 * 4 3 2 6 6 C 1.50700 * 120.00230 * 355.29827 * 4 3 2 7 7 H 1.08998 * 109.82553 * 50.71006 * 6 4 3 8 8 C 1.54381 * 109.83057 * 289.82011 * 6 4 3 9 9 C 1.55450 * 102.18984 * 219.18381 * 8 6 4 10 10 H 1.09002 * 111.09323 * 276.11006 * 9 8 6 11 11 C 1.52993 * 111.15001 * 151.99404 * 9 8 6 12 12 C 1.54949 * 100.98682 * 34.03811 * 9 8 6 13 13 O 1.43244 * 109.83048 * 171.59578 * 6 4 3 14 14 C 1.46495 * 119.99989 * 95.23985 * 3 2 1 15 15 C 1.53499 * 114.20202 * 60.00482 * 14 3 2 16 16 N 1.47070 * 87.98223 * 220.34090 * 15 14 3 17 17 C 1.36932 * 136.05596 * 207.08694 * 16 15 14 18 18 H 1.07999 * 120.00270 * 5.34465 * 17 16 15 19 19 C 1.38815 * 119.99838 * 185.35317 * 17 16 15 20 20 N 1.31612 * 120.00113 * 5.30078 * 19 17 16 21 21 Si 1.86803 * 119.99865 * 185.29568 * 19 17 16 22 22 H 1.48502 * 109.47435 * 265.00003 * 21 19 17 23 23 H 1.48499 * 109.47191 * 25.00694 * 21 19 17 24 24 H 1.48502 * 109.46793 * 145.00100 * 21 19 17 25 25 C 1.47066 * 87.88505 * 27.34473 * 16 15 14 26 26 H 1.08994 * 109.47569 * 60.00161 * 1 2 3 27 27 H 1.09005 * 109.47400 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47235 * 299.99989 * 1 2 3 29 29 H 1.09005 * 109.47235 * 240.00011 * 2 1 3 30 30 H 1.09001 * 109.47495 * 120.00255 * 2 1 3 31 31 H 1.09000 * 110.84635 * 337.32086 * 8 6 4 32 32 H 1.08996 * 110.84908 * 100.93971 * 8 6 4 33 33 H 1.09000 * 109.47299 * 306.91582 * 11 9 8 34 34 H 1.08999 * 109.47311 * 66.92201 * 11 9 8 35 35 H 1.09007 * 109.47121 * 186.91991 * 11 9 8 36 36 H 1.09004 * 110.30809 * 204.69554 * 12 9 8 37 37 H 1.08995 * 110.39602 * 82.56665 * 12 9 8 38 38 H 1.08998 * 113.27954 * 193.06781 * 14 3 2 39 39 H 1.09007 * 113.46902 * 105.56668 * 15 14 3 40 40 H 1.08992 * 113.52556 * 335.13070 * 15 14 3 41 41 H 0.97002 * 120.00220 * 180.02562 * 20 19 17 42 42 H 1.09004 * 113.46868 * 87.43286 * 25 16 15 43 43 H 1.08997 * 113.46902 * 217.87660 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1424 2.0520 -1.1624 5 8 2.4647 3.2212 -1.1563 6 6 1.8806 1.3494 -2.4696 7 1 0.9181 0.8395 -2.4289 8 6 3.0034 0.3273 -2.7488 9 6 3.2157 0.4833 -4.2809 10 1 2.4981 -0.1176 -4.8395 11 6 4.6510 0.1325 -4.6778 12 6 2.9395 1.9969 -4.4646 13 8 1.8819 2.3001 -3.5410 14 6 2.3718 2.0331 1.2634 15 6 3.4901 1.3285 2.0438 16 7 2.7328 1.6026 3.2745 17 6 3.0339 1.7805 4.5984 18 1 4.0650 1.8118 4.9183 19 6 2.0138 1.9206 5.5294 20 7 0.7594 1.7785 5.1575 21 14 2.4217 2.3106 7.3101 22 1 2.4815 1.0496 8.0920 23 1 3.7363 2.9979 7.3778 24 1 1.3713 3.1947 7.8762 25 6 1.5093 1.5949 2.4585 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9101 0.5885 -2.2033 32 1 2.6782 -0.6833 -2.5019 33 1 5.3475 0.7113 -4.0712 34 1 4.8236 -0.9312 -4.5141 35 1 4.8044 0.3676 -5.7311 36 1 2.6197 2.2018 -5.4864 37 1 3.8299 2.5775 -4.2239 38 1 2.5028 3.1112 1.1699 39 1 4.4465 1.8494 1.9976 40 1 3.5774 0.2664 1.8154 41 1 0.0465 1.8767 5.8080 42 1 1.0736 0.6029 2.3387 43 1 0.7782 2.3428 2.7654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950915232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = -40.995706 kcal Electronic energy + Delta-G solvation = -23348.939524 eV Core-core repulsion = 20009.494607 eV Total energy + Delta-G solvation = -3339.444917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83104 -40.36422 -38.88450 -36.56306 -34.52296 -34.21380 -31.50382 -31.36691 -29.36095 -27.29605 -26.46243 -25.73568 -24.79291 -23.65024 -21.83449 -21.16152 -19.79838 -19.07622 -18.55558 -17.60629 -17.31094 -16.88016 -16.70057 -16.19330 -15.80056 -15.43379 -14.99260 -14.69895 -14.41862 -14.34429 -13.97141 -13.82266 -13.75067 -13.36072 -13.23428 -13.19039 -12.94779 -12.72730 -12.65969 -12.46338 -12.24131 -12.12190 -12.05384 -11.99251 -11.83786 -11.52497 -11.36664 -11.16600 -10.89548 -10.31060 -9.59048 -8.99875 -7.97582 -5.30733 1.44328 1.47050 1.50320 1.56353 1.81394 2.45966 2.89413 3.24930 3.29487 3.45101 3.50592 3.74968 3.77252 3.95270 4.04569 4.13456 4.22863 4.34207 4.36563 4.46602 4.50404 4.57958 4.68281 4.70172 4.77132 4.81834 4.82688 4.89759 4.91218 4.97493 5.07449 5.13079 5.23584 5.25492 5.39255 5.41386 5.43288 5.67477 5.83499 5.90692 6.45561 6.84338 7.14709 7.52906 8.51945 9.21296 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.003802 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.223738 B = 7362.673984 C = 7504.276860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 N -0.587 5.587 4 C 0.494 3.506 5 O -0.585 6.585 6 C 0.069 3.931 7 H 0.130 0.870 8 C -0.139 4.139 9 C -0.113 4.113 10 H 0.114 0.886 11 C -0.140 4.140 12 C 0.041 3.959 13 O -0.385 6.385 14 C 0.107 3.893 15 C 0.115 3.885 16 N -0.636 5.636 17 C -0.234 4.234 18 H 0.088 0.912 19 C -0.063 4.063 20 N -0.951 5.951 21 Si 0.984 3.016 22 H -0.281 1.281 23 H -0.268 1.268 24 H -0.294 1.294 25 C 0.163 3.837 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.251 0.749 42 H 0.047 0.953 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 -9.906 -21.160 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 N -0.320 5.320 4 C 0.283 3.717 5 O -0.464 6.464 6 C 0.008 3.992 7 H 0.147 0.853 8 C -0.177 4.177 9 C -0.131 4.131 10 H 0.132 0.868 11 C -0.197 4.197 12 C -0.035 4.035 13 O -0.304 6.304 14 C 0.002 3.998 15 C -0.011 4.011 16 N -0.362 5.362 17 C -0.362 4.362 18 H 0.106 0.894 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.811 3.189 22 H -0.208 1.208 23 H -0.193 1.193 24 H -0.221 1.221 25 C 0.036 3.964 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.055 0.945 29 H 0.135 0.865 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.284 -9.069 -20.837 22.961 hybrid contribution -0.020 0.592 1.562 1.671 sum 3.265 -8.477 -19.275 21.308 Atomic orbital electron populations 1.22292 0.95106 1.03836 1.01857 1.22008 0.95229 0.80669 1.05012 1.48020 1.64007 1.15175 1.04760 1.21879 0.76178 0.86833 0.86801 1.90656 1.49287 1.18584 1.87912 1.22867 1.03155 0.89280 0.83884 0.85264 1.23341 0.96993 0.99959 0.97366 1.22900 1.00360 0.95244 0.94642 0.86813 1.21679 0.93310 1.02639 1.02111 1.23777 0.89924 0.95974 0.93842 1.88487 1.53110 1.53725 1.35053 1.23047 0.97755 0.97116 0.81895 1.22883 0.95130 0.98251 0.84853 1.45624 1.05184 1.82687 1.02718 1.19316 0.93092 1.42519 0.81284 0.89445 1.25702 0.95157 1.02388 1.02407 1.70018 0.98929 1.56227 1.34714 0.84994 0.77276 0.77585 0.79042 1.20810 1.19256 1.22062 1.22364 0.90386 0.97944 0.85661 0.91817 0.88541 0.94473 0.86532 0.90091 0.91076 0.85370 0.93435 0.90518 0.90967 0.87493 0.93465 0.89355 0.93709 0.92172 0.94064 0.93508 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.85 71.98 0.71 -3.10 16 2 C 0.09 2.11 4.83 86.38 0.42 2.53 16 3 N -0.59 -18.81 2.72 -796.66 -2.17 -20.98 16 4 C 0.49 16.59 6.84 87.66 0.60 17.19 16 5 O -0.58 -25.95 16.05 15.63 0.25 -25.70 16 6 C 0.07 1.61 3.08 30.32 0.09 1.70 16 7 H 0.13 2.35 6.36 -2.39 -0.02 2.33 16 8 C -0.14 -2.12 5.03 31.91 0.16 -1.96 16 9 C -0.11 -1.39 3.69 -9.29 -0.03 -1.42 16 10 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 11 C -0.14 -1.38 9.31 71.98 0.67 -0.71 16 12 C 0.04 0.77 7.26 72.65 0.53 1.30 16 13 O -0.39 -10.65 10.58 -130.31 -1.38 -12.03 16 14 C 0.11 4.46 4.60 45.55 0.21 4.67 16 15 C 0.12 4.82 8.23 83.18 0.68 5.51 16 16 N -0.64 -33.55 3.77 -737.98 -2.78 -36.33 16 17 C -0.23 -13.40 10.74 84.03 0.90 -12.50 16 18 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 19 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 20 N -0.95 -57.92 11.74 21.65 0.25 -57.66 16 21 Si 0.98 46.05 29.56 68.60 2.03 48.08 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 C 0.16 7.89 6.14 83.27 0.51 8.40 16 26 H 0.06 1.27 6.87 -2.39 -0.02 1.25 16 27 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.04 1.09 6.73 -2.38 -0.02 1.07 16 29 H 0.12 1.67 4.73 -2.38 -0.01 1.66 16 30 H 0.08 2.05 5.96 -2.39 -0.01 2.04 16 31 H 0.07 1.33 7.71 -2.39 -0.02 1.31 16 32 H 0.13 1.07 6.75 -2.39 -0.02 1.05 16 33 H 0.05 0.60 8.11 -2.39 -0.02 0.58 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.05 1.02 8.03 -2.39 -0.02 1.00 16 38 H 0.09 4.21 7.26 -2.39 -0.02 4.19 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.06 2.23 7.05 -2.39 -0.02 2.21 16 41 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 42 H 0.05 2.17 5.42 -2.38 -0.01 2.16 16 43 H 0.02 1.28 7.49 -2.39 -0.02 1.26 16 Total: -1.00 -78.01 334.29 3.12 -74.89 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.00 Total: 11.30 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 5.92 Total: 18.43 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.70 Total: -114.97 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.13 Total: -37.73 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -78.01 3.12 -74.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950915232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.894 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds