Wall clock time and date at job start Tue Mar 31 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46937 * 2 1 4 4 C 1.34777 * 120.00228 * 84.05714 * 3 2 1 5 5 O 1.21280 * 119.99827 * 4.63628 * 4 3 2 6 6 C 1.50704 * 120.00115 * 184.63193 * 4 3 2 7 7 H 1.08999 * 110.33288 * 53.07685 * 6 4 3 8 8 C 1.54486 * 110.36911 * 290.82592 * 6 4 3 9 9 C 1.54513 * 104.06063 * 217.18792 * 8 6 4 10 10 H 1.08997 * 110.50635 * 118.78221 * 9 8 6 11 11 C 1.52990 * 110.51208 * 241.35568 * 9 8 6 12 12 C 1.54485 * 104.06185 * 0.02562 * 9 8 6 13 13 O 1.44426 * 110.36878 * 175.44727 * 6 4 3 14 14 C 1.46500 * 119.99879 * 264.06226 * 3 2 1 15 15 C 1.53941 * 113.74551 * 36.67161 * 14 3 2 16 16 N 1.47572 * 86.12036 * 222.04789 * 15 14 3 17 17 C 1.36934 * 134.49386 * 204.63607 * 16 15 14 18 18 H 1.08007 * 120.00375 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00011 * 0.02562 * 17 16 15 20 20 N 1.31614 * 119.99980 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99841 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47134 * 90.00237 * 21 19 17 23 23 H 1.48501 * 109.46600 * 210.00045 * 21 19 17 24 24 H 1.48499 * 109.47008 * 329.99935 * 21 19 17 25 25 C 1.47583 * 91.01408 * 24.63952 * 16 15 14 26 26 H 1.08997 * 109.47277 * 54.12209 * 1 2 3 27 27 H 1.09007 * 109.46950 * 294.11718 * 1 2 3 28 28 H 1.08995 * 109.46693 * 174.12216 * 1 2 3 29 29 H 1.08997 * 109.47303 * 119.99592 * 2 1 3 30 30 H 1.08995 * 109.47090 * 239.99978 * 2 1 3 31 31 H 1.08995 * 110.51308 * 335.83326 * 8 6 4 32 32 H 1.08996 * 110.50556 * 98.40903 * 8 6 4 33 33 H 1.09008 * 109.47038 * 60.00359 * 11 9 8 34 34 H 1.09003 * 109.47206 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47484 * 300.00653 * 11 9 8 36 36 H 1.08996 * 110.36851 * 142.81032 * 12 9 8 37 37 H 1.09000 * 110.36868 * 265.03199 * 12 9 8 38 38 H 1.09003 * 112.94330 * 168.40741 * 14 3 2 39 39 H 1.08999 * 113.77009 * 336.35503 * 15 14 3 40 40 H 1.09001 * 113.76968 * 107.74269 * 15 14 3 41 41 H 0.97005 * 119.99902 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.76878 * 221.05752 * 25 16 15 43 43 H 1.09003 * 113.76845 * 89.65868 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1290 2.0569 1.1609 5 8 1.9052 1.4960 2.2127 6 6 2.5311 3.5093 1.1521 7 1 1.8825 4.0778 0.4856 8 6 4.0071 3.6561 0.7204 9 6 4.5417 4.8105 1.5973 10 1 5.3576 4.4626 2.2307 11 6 5.0037 5.9780 0.7232 12 6 3.3256 5.2242 2.4554 13 8 2.4819 4.0526 2.4893 14 6 2.3862 2.0281 -1.2619 15 6 1.4816 1.6385 -2.4450 16 7 2.7233 1.5596 -3.2386 17 6 3.0197 1.6728 -4.5706 18 1 4.0409 1.5710 -4.9073 19 6 2.0076 1.9183 -5.4885 20 7 0.7631 2.0418 -5.0784 21 14 2.4121 2.0734 -7.3056 22 1 2.3299 0.7366 -7.9469 23 1 1.4416 2.9930 -7.9519 24 1 3.7863 2.6139 -7.4624 25 6 3.5173 1.3098 -2.0199 26 1 -0.3634 0.6022 -0.8327 27 1 -0.3633 0.4199 0.9380 28 1 -0.3632 -1.0222 -0.1052 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 4.5572 2.7370 0.9221 32 1 4.0719 3.9148 -0.3364 33 1 4.1644 6.3428 0.1309 34 1 5.3765 6.7819 1.3580 35 1 5.7987 5.6415 0.0578 36 1 3.6452 5.4913 3.4627 37 1 2.7998 6.0585 1.9912 38 1 2.5397 3.1024 -1.1598 39 1 0.9801 0.6791 -2.3173 40 1 0.8069 2.4335 -2.7626 41 1 0.0559 2.2137 -5.7198 42 1 4.4681 1.8423 -1.9982 43 1 3.6139 0.2538 -1.7673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950915234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:12 Heat of formation + Delta-G solvation = -22.261272 kcal Electronic energy + Delta-G solvation = -23639.237072 eV Core-core repulsion = 20300.604541 eV Total energy + Delta-G solvation = -3338.632531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53071 -38.93328 -37.61855 -34.54771 -33.60095 -32.13580 -31.42547 -29.26908 -27.51124 -26.37264 -24.99467 -24.27800 -23.46247 -22.27360 -20.63422 -19.96899 -18.54020 -17.55324 -16.76612 -16.12787 -15.98019 -15.36052 -15.23995 -14.82721 -14.35603 -14.00745 -13.89265 -13.55262 -13.37373 -13.13427 -12.74768 -12.48402 -12.39690 -11.98670 -11.89304 -11.65189 -11.50271 -11.31723 -11.22608 -10.95425 -10.92407 -10.82341 -10.73383 -10.61472 -10.39545 -10.13303 -9.94321 -9.64541 -9.29658 -8.88788 -8.20291 -7.00890 -5.87584 -3.20974 2.79694 3.05092 3.33297 3.38496 3.40295 3.99361 4.30807 4.41558 4.58616 4.71416 4.84346 5.06570 5.08696 5.16824 5.28563 5.31860 5.40715 5.42417 5.45451 5.54947 5.60972 5.66649 5.68264 5.71650 5.75732 5.90691 5.92267 5.97813 6.09495 6.16506 6.22058 6.33922 6.41033 6.55891 6.64170 6.90015 7.07967 7.12683 7.41449 7.75533 7.86284 8.44479 8.93574 9.59749 10.45397 11.29385 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.005306 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.042511 B = 5276.003265 C = 6446.645861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.115 3.885 3 N -0.592 5.592 4 C 0.520 3.480 5 O -0.534 6.534 6 C 0.059 3.941 7 H 0.095 0.905 8 C -0.141 4.141 9 C -0.125 4.125 10 H 0.084 0.916 11 C -0.145 4.145 12 C 0.046 3.954 13 O -0.347 6.347 14 C 0.075 3.925 15 C 0.155 3.845 16 N -0.606 5.606 17 C -0.225 4.225 18 H 0.082 0.918 19 C -0.004 4.004 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.109 3.891 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.047 0.953 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 4.667 11.238 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.326 5.326 4 C 0.307 3.693 5 O -0.410 6.410 6 C -0.002 4.002 7 H 0.112 0.888 8 C -0.179 4.179 9 C -0.144 4.144 10 H 0.102 0.898 11 C -0.202 4.202 12 C -0.031 4.031 13 O -0.265 6.265 14 C -0.029 4.029 15 C 0.029 3.971 16 N -0.332 5.332 17 C -0.353 4.353 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.019 4.019 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.777 4.338 11.633 13.303 hybrid contribution 0.242 0.062 -1.355 1.378 sum 5.019 4.400 10.278 12.255 Atomic orbital electron populations 1.22193 0.95857 1.02130 1.02542 1.21355 0.94528 0.82095 1.02749 1.48085 1.64079 1.13997 1.06417 1.20143 0.77471 0.87883 0.83810 1.90666 1.49931 1.69575 1.30869 1.22867 0.97842 0.93252 0.86275 0.88791 1.23088 0.93894 0.99608 1.01275 1.22530 0.98724 0.95887 0.97251 0.89757 1.21830 1.01803 0.97114 0.99449 1.23573 0.89942 0.88730 1.00901 1.89238 1.68423 1.41484 1.27356 1.24229 0.99502 0.97463 0.81702 1.22701 0.90752 0.99539 0.84066 1.45707 1.03252 1.82934 1.01343 1.18977 0.93583 1.42597 0.80102 0.90057 1.24790 0.95240 1.01956 0.98140 1.69801 0.99007 1.54577 1.33221 0.86113 0.77368 0.77571 0.84656 1.21536 1.21560 1.20545 1.22987 0.94798 0.97290 0.86790 0.91448 0.92667 0.91949 0.90702 0.89808 0.90170 0.88831 0.92075 0.92407 0.91919 0.88940 0.91903 0.87317 0.94324 0.90474 0.93473 0.93440 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.89 37.16 0.37 -2.15 16 2 C 0.11 1.79 5.14 -4.04 -0.02 1.77 16 3 N -0.59 -9.69 2.70 -167.91 -0.45 -10.15 16 4 C 0.52 8.93 6.93 -10.98 -0.08 8.85 16 5 O -0.53 -10.85 16.21 -13.61 -0.22 -11.07 16 6 C 0.06 0.85 2.75 -27.10 -0.07 0.78 16 7 H 0.09 1.28 7.51 -51.93 -0.39 0.89 16 8 C -0.14 -1.71 5.26 -25.16 -0.13 -1.84 16 9 C -0.13 -1.26 3.72 -89.05 -0.33 -1.59 16 10 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.14 -1.23 8.97 37.15 0.33 -0.89 16 12 C 0.05 0.49 7.19 37.94 0.27 0.77 16 13 O -0.35 -5.35 10.91 -54.40 -0.59 -5.95 16 14 C 0.08 1.30 3.66 -70.15 -0.26 1.04 16 15 C 0.16 3.36 6.42 -2.98 -0.02 3.34 16 16 N -0.61 -14.39 3.70 -178.11 -0.66 -15.05 16 17 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 18 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -25.97 11.38 55.49 0.63 -25.34 16 21 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.11 2.04 8.44 -2.97 -0.03 2.01 16 26 H 0.07 1.08 6.66 -51.93 -0.35 0.74 16 27 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.16 7.54 -51.93 -0.39 0.77 16 30 H 0.08 1.32 6.14 -51.93 -0.32 1.00 16 31 H 0.08 1.02 7.86 -51.93 -0.41 0.62 16 32 H 0.09 1.10 6.51 -51.93 -0.34 0.76 16 33 H 0.06 0.53 8.09 -51.92 -0.42 0.11 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.60 7.83 -51.93 -0.41 0.20 16 38 H 0.11 1.76 4.84 -51.93 -0.25 1.51 16 39 H 0.04 0.85 5.42 -51.93 -0.28 0.57 16 40 H 0.08 1.87 7.15 -51.93 -0.37 1.50 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.70 7.07 -51.93 -0.37 0.33 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -31.43 336.10 -8.27 -39.70 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.80 Total: 0.83 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.22 Total: 5.76 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.48 Total: -50.54 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.81 Total: -17.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.43 -8.27 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950915234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.441 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds