Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 C 1.34777 * 120.00221 * 86.48688 * 3 2 1 5 5 O 1.21279 * 120.00004 * 175.27374 * 4 3 2 6 6 C 1.50692 * 119.99871 * 355.28181 * 4 3 2 7 7 H 1.09006 * 110.27607 * 316.03190 * 6 4 3 8 8 C 1.54948 * 110.31209 * 78.22931 * 6 4 3 9 9 C 1.55309 * 100.94011 * 155.36145 * 8 6 4 10 10 H 1.08998 * 111.02507 * 84.13725 * 9 8 6 11 11 C 1.53002 * 110.84839 * 207.68158 * 9 8 6 12 12 C 1.54381 * 102.25560 * 325.86807 * 9 8 6 13 13 O 1.43240 * 107.58621 * 21.35777 * 12 9 8 14 14 C 1.46506 * 119.99715 * 266.48823 * 3 2 1 15 15 C 1.53940 * 113.74150 * 37.04634 * 14 3 2 16 16 N 1.47585 * 86.11616 * 222.04564 * 15 14 3 17 17 C 1.36932 * 134.49131 * 204.64078 * 16 15 14 18 18 H 1.08003 * 119.99912 * 180.02562 * 17 16 15 19 19 C 1.38818 * 120.00296 * 0.02562 * 17 16 15 20 20 N 1.31613 * 119.99668 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47205 * 90.00243 * 21 19 17 23 23 H 1.48501 * 109.46934 * 209.99773 * 21 19 17 24 24 H 1.48499 * 109.47479 * 330.00067 * 21 19 17 25 25 C 1.47580 * 91.01249 * 24.64200 * 16 15 14 26 26 H 1.09001 * 109.47426 * 174.57690 * 1 2 3 27 27 H 1.08999 * 109.47445 * 54.57886 * 1 2 3 28 28 H 1.08997 * 109.47299 * 294.57873 * 1 2 3 29 29 H 1.09000 * 109.47033 * 120.00167 * 2 1 3 30 30 H 1.09001 * 109.46839 * 239.99968 * 2 1 3 31 31 H 1.08999 * 111.12805 * 273.27902 * 8 6 4 32 32 H 1.08993 * 111.12311 * 37.44475 * 8 6 4 33 33 H 1.08994 * 109.47752 * 174.28537 * 11 9 8 34 34 H 1.09011 * 109.46773 * 294.28542 * 11 9 8 35 35 H 1.09004 * 109.47158 * 54.27943 * 11 9 8 36 36 H 1.09003 * 109.82998 * 261.84697 * 12 9 8 37 37 H 1.08989 * 109.91115 * 140.91285 * 12 9 8 38 38 H 1.09000 * 112.93958 * 168.78069 * 14 3 2 39 39 H 1.08996 * 113.77211 * 336.34712 * 15 14 3 40 40 H 1.09007 * 113.76923 * 107.74684 * 15 14 3 41 41 H 0.97003 * 119.99622 * 180.02562 * 20 19 17 42 42 H 1.09007 * 113.76762 * 221.05499 * 25 16 15 43 43 H 1.08995 * 113.87020 * 89.67303 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1755 2.0404 1.1650 5 8 2.6601 3.1522 1.1720 6 6 1.7493 1.3960 2.4588 7 1 0.7760 0.9196 2.3409 8 6 2.8059 0.3594 2.9169 9 6 2.5428 0.3269 4.4472 10 1 1.7277 -0.3551 4.6895 11 6 3.8131 -0.0537 5.2103 12 6 2.1421 1.7884 4.7419 13 8 1.7019 2.3732 3.5106 14 6 2.3357 2.0459 -1.2664 15 6 1.3789 1.6797 -2.4154 16 7 2.5851 1.6068 -3.2627 17 6 2.8249 1.7394 -4.6043 18 1 3.8301 1.6375 -4.9859 19 6 1.7759 2.0048 -5.4740 20 7 0.5509 2.1284 -5.0091 21 14 2.1030 2.1849 -7.3043 22 1 1.9845 0.8584 -7.9613 23 1 1.1117 3.1199 -7.8946 24 1 3.4727 2.7196 -7.5122 25 6 3.4290 1.3336 -2.0832 26 1 -0.3634 -1.0231 -0.0971 27 1 -0.3634 0.5956 -0.8374 28 1 -0.3634 0.4274 0.9345 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 2.6211 -0.6155 2.4658 32 1 3.8162 0.7058 2.6993 33 1 3.6319 0.0287 6.2818 34 1 4.0898 -1.0795 4.9664 35 1 4.6229 0.6183 4.9259 36 1 3.0021 2.3375 5.1253 37 1 1.3333 1.8116 5.4721 38 1 2.4998 3.1176 -1.1543 39 1 0.8777 0.7212 -2.2812 40 1 0.6960 2.4833 -2.6915 41 1 -0.1821 2.3135 -5.6168 42 1 4.3831 1.8607 -2.0940 43 1 3.5313 0.2738 -1.8501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950915235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = -20.114716 kcal Electronic energy + Delta-G solvation = -23299.102449 eV Core-core repulsion = 19960.563000 eV Total energy + Delta-G solvation = -3338.539449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56076 -39.02398 -37.33312 -35.09989 -33.78319 -32.15078 -30.39404 -30.18107 -27.45772 -26.60448 -24.84113 -24.33913 -23.46775 -22.24498 -21.02709 -19.63319 -18.41500 -17.79861 -16.81697 -16.45931 -16.03381 -15.46997 -15.08922 -14.75259 -14.48468 -14.06798 -13.79366 -13.72446 -13.34314 -13.21645 -12.81076 -12.61914 -12.50903 -12.24316 -11.84154 -11.64949 -11.52371 -11.45296 -11.29239 -11.11595 -11.07327 -10.89169 -10.73841 -10.65612 -10.25566 -10.07522 -9.88092 -9.55229 -9.17567 -8.81131 -8.15635 -6.91726 -5.79719 -3.12356 2.73780 3.07627 3.38782 3.43734 3.45849 3.86000 4.09353 4.41073 4.45064 4.51078 4.83203 4.84996 4.93916 5.02795 5.14424 5.20027 5.29842 5.33606 5.38035 5.46722 5.47846 5.55561 5.60204 5.65340 5.67807 5.74488 5.86778 5.93471 5.96300 6.07597 6.18707 6.37934 6.45904 6.58971 6.75472 6.85055 7.18757 7.35834 7.51424 7.77092 7.94750 8.48061 9.01697 9.67568 10.54781 11.37447 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038374 B = 0.003690 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.478267 B = 7586.941093 C = 7653.020935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 N -0.593 5.593 4 C 0.512 3.488 5 O -0.526 6.526 6 C 0.063 3.937 7 H 0.096 0.904 8 C -0.142 4.142 9 C -0.126 4.126 10 H 0.088 0.912 11 C -0.142 4.142 12 C 0.052 3.948 13 O -0.355 6.355 14 C 0.092 3.908 15 C 0.155 3.845 16 N -0.606 5.606 17 C -0.223 4.223 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.108 3.892 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 -8.233 19.505 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.025 4.025 3 N -0.327 5.327 4 C 0.298 3.702 5 O -0.402 6.402 6 C 0.002 3.998 7 H 0.113 0.887 8 C -0.180 4.180 9 C -0.144 4.144 10 H 0.107 0.893 11 C -0.199 4.199 12 C -0.024 4.024 13 O -0.273 6.273 14 C -0.012 4.012 15 C 0.029 3.971 16 N -0.332 5.332 17 C -0.351 4.351 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.019 4.019 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.632 -7.335 19.133 20.556 hybrid contribution 0.043 -0.363 -1.021 1.084 sum 1.675 -7.698 18.112 19.752 Atomic orbital electron populations 1.22374 0.95759 1.02560 1.02923 1.21675 0.94769 0.82864 1.03231 1.48120 1.64681 1.13874 1.06048 1.20373 0.78924 0.86118 0.84778 1.90691 1.43249 1.19591 1.86654 1.22978 0.99742 0.89236 0.87851 0.88669 1.23385 1.00008 0.99462 0.95110 1.22728 0.99471 0.97315 0.94934 0.89345 1.21731 0.96366 1.01927 0.99908 1.23283 0.99518 0.92498 0.87133 1.88526 1.87102 1.35152 1.16558 1.24038 0.98916 0.98221 0.79975 1.22727 0.91071 0.99318 0.83948 1.45654 1.03578 1.82347 1.01645 1.18994 0.93907 1.42072 0.80086 0.90068 1.24798 0.95263 1.02053 0.98214 1.69812 0.98626 1.54569 1.33672 0.86089 0.77303 0.77481 0.84695 1.21599 1.21580 1.20555 1.22974 0.95094 0.96852 0.86980 0.91620 0.90618 0.92884 0.90984 0.89257 0.88852 0.89526 0.92150 0.92012 0.92072 0.91046 0.91193 0.86806 0.94554 0.90588 0.93563 0.93539 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 9.77 37.15 0.36 -1.78 16 2 C 0.10 1.25 4.87 -4.04 -0.02 1.23 16 3 N -0.59 -9.74 2.70 -167.91 -0.45 -10.19 16 4 C 0.51 8.78 6.97 -10.99 -0.08 8.70 16 5 O -0.53 -11.36 16.12 -13.35 -0.22 -11.58 16 6 C 0.06 0.82 2.96 -26.86 -0.08 0.74 16 7 H 0.10 1.07 5.88 -51.93 -0.31 0.76 16 8 C -0.14 -1.37 5.45 -24.48 -0.13 -1.50 16 9 C -0.13 -0.98 3.60 -88.67 -0.32 -1.30 16 10 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 11 C -0.14 -0.91 9.14 37.16 0.34 -0.57 16 12 C 0.05 0.53 7.40 37.88 0.28 0.81 16 13 O -0.36 -5.22 10.64 -54.14 -0.58 -5.80 16 14 C 0.09 1.86 4.38 -70.15 -0.31 1.55 16 15 C 0.16 3.61 6.35 -2.98 -0.02 3.59 16 16 N -0.61 -15.58 3.70 -178.10 -0.66 -16.24 16 17 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -27.09 11.38 55.49 0.63 -26.46 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.11 2.27 8.44 -2.98 -0.03 2.24 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.12 6.33 -51.93 -0.33 0.80 16 28 H 0.05 0.58 6.37 -51.93 -0.33 0.25 16 29 H 0.07 0.70 4.84 -51.93 -0.25 0.44 16 30 H 0.09 1.24 6.22 -51.93 -0.32 0.91 16 31 H 0.09 0.70 6.32 -51.93 -0.33 0.37 16 32 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 35 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.07 0.69 7.81 -51.93 -0.41 0.29 16 37 H 0.07 0.58 8.14 -51.94 -0.42 0.16 16 38 H 0.11 2.56 7.28 -51.93 -0.38 2.18 16 39 H 0.04 0.82 5.29 -51.93 -0.27 0.54 16 40 H 0.08 2.01 7.15 -51.92 -0.37 1.63 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.67 7.00 -51.93 -0.36 0.30 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -33.82 332.48 -8.11 -41.93 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.58 Total: -0.77 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.25 Total: 6.99 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.48 Total: -52.89 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.79 Total: -17.37 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.82 -8.11 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950915235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.814 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds