Wall clock time and date at job start Tue Mar 31 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47402 * 2 1 4 4 C 1.34775 * 119.99972 * 275.19290 * 3 2 1 5 5 O 1.21279 * 119.99892 * 184.70804 * 4 3 2 6 6 C 1.50697 * 120.00170 * 4.70425 * 4 3 2 7 7 H 1.09000 * 110.33499 * 44.18095 * 6 4 3 8 8 O 1.44430 * 110.37164 * 166.55187 * 6 4 3 9 9 C 1.44424 * 105.27409 * 159.34539 * 8 6 4 10 10 C 1.54484 * 104.80413 * 319.48541 * 9 8 6 11 11 C 1.54482 * 110.37391 * 281.93254 * 6 4 3 12 12 H 1.08999 * 110.51332 * 98.54566 * 11 6 4 13 13 C 1.52999 * 110.51067 * 335.96945 * 11 6 4 14 14 C 1.46500 * 119.99542 * 95.18783 * 3 2 1 15 15 C 1.53941 * 113.74534 * 306.04894 * 14 3 2 16 16 N 1.47578 * 86.11787 * 137.95340 * 15 14 3 17 17 C 1.36933 * 134.49278 * 155.35919 * 16 15 14 18 18 H 1.08000 * 119.99984 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00025 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00018 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46781 * 59.99839 * 21 19 17 23 23 H 1.48495 * 109.47003 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47319 * 300.00091 * 21 19 17 25 25 C 1.47586 * 91.01574 * 335.36270 * 16 15 14 26 26 H 1.09002 * 109.46772 * 307.47168 * 1 2 3 27 27 H 1.09001 * 109.47379 * 67.46861 * 1 2 3 28 28 H 1.09000 * 109.47195 * 187.46905 * 1 2 3 29 29 H 1.09005 * 109.46458 * 239.99960 * 2 1 3 30 30 H 1.08996 * 109.47089 * 120.00320 * 2 1 3 31 31 H 1.09002 * 110.37376 * 200.65283 * 9 8 6 32 32 H 1.09003 * 110.46834 * 78.36371 * 9 8 6 33 33 H 1.08997 * 110.50842 * 265.33450 * 10 9 8 34 34 H 1.08994 * 110.50761 * 142.62194 * 10 9 8 35 35 H 1.08998 * 109.46993 * 60.00243 * 13 11 6 36 36 H 1.09003 * 109.47217 * 179.97438 * 13 11 6 37 37 H 1.09002 * 109.47038 * 300.00496 * 13 11 6 38 38 H 1.09003 * 113.01202 * 174.39282 * 14 3 2 39 39 H 1.09001 * 113.77015 * 252.25784 * 15 14 3 40 40 H 1.09004 * 113.76697 * 23.65639 * 15 14 3 41 41 H 0.96996 * 119.99727 * 180.02562 * 20 19 17 42 42 H 1.08992 * 113.76696 * 270.33988 * 25 16 15 43 43 H 1.08994 * 113.87109 * 138.94881 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1435 2.0517 -1.1624 5 8 2.6276 3.1637 -1.1719 6 6 1.6819 1.4198 -2.4503 7 1 0.7105 0.9449 -2.3123 8 8 1.6158 2.4092 -3.5003 9 6 1.6613 1.6589 -4.7335 10 6 2.7056 0.5487 -4.4818 11 6 2.7195 0.3878 -2.9451 12 1 2.4184 -0.6214 -2.6640 13 6 4.1054 0.7088 -2.3821 14 6 2.3707 2.0334 1.2636 15 6 1.2461 1.9981 2.3141 16 7 2.3064 1.6876 3.2925 17 6 2.4414 1.8504 4.6454 18 1 1.6434 2.3002 5.2174 19 6 3.6045 1.4384 5.2814 20 7 4.5773 0.8908 4.5841 21 14 3.7890 1.6612 7.1269 22 1 2.7135 0.9128 7.8257 23 1 5.1123 1.1434 7.5581 24 1 3.6876 3.1039 7.4640 25 6 3.1629 1.1312 2.2271 26 1 -0.3633 0.6252 0.8156 27 1 -0.3634 0.3938 -0.9492 28 1 -0.3633 -1.0189 0.1336 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.9793 2.2995 -5.5560 32 1 0.6867 1.2210 -4.9495 33 1 3.6866 0.8583 -4.8423 34 1 2.3977 -0.3809 -4.9603 35 1 4.0704 0.6812 -1.2930 36 1 4.8232 -0.0289 -2.7409 37 1 4.4099 1.7025 -2.7107 38 1 2.8110 3.0210 1.1251 39 1 0.7667 2.9634 2.4772 40 1 0.5328 1.1870 2.1670 41 1 5.3898 0.6025 5.0286 42 1 3.0127 0.0655 2.0544 43 1 4.2143 1.4031 2.3193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951773656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:36 Heat of formation + Delta-G solvation = -13.691745 kcal Electronic energy + Delta-G solvation = -23745.685282 eV Core-core repulsion = 20407.424354 eV Total energy + Delta-G solvation = -3338.260928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73598 -38.94610 -37.28613 -35.12925 -33.49193 -32.08474 -30.24094 -30.13352 -27.70383 -26.75696 -24.99762 -23.79818 -23.36627 -22.42753 -21.04661 -19.57927 -18.48780 -17.39571 -16.81572 -16.55044 -16.28233 -15.25215 -14.99777 -14.90589 -14.55915 -13.84106 -13.82626 -13.74522 -13.23523 -13.14819 -12.72803 -12.54313 -12.46616 -12.21038 -11.74700 -11.62221 -11.56504 -11.34778 -11.13830 -11.11841 -10.99329 -10.87625 -10.69113 -10.54076 -10.24480 -10.08880 -9.92257 -9.55749 -9.27824 -8.79660 -8.14202 -6.91285 -5.79541 -3.12229 2.78441 3.06612 3.39636 3.43606 3.44719 3.95598 4.27173 4.42985 4.48588 4.57456 4.85444 4.92891 4.97774 5.12236 5.20018 5.22948 5.27173 5.39670 5.45846 5.48417 5.51725 5.54385 5.67950 5.74639 5.78012 5.85938 5.88139 5.94166 6.00327 6.15906 6.26137 6.32178 6.49453 6.59249 6.64143 6.78594 7.19641 7.35428 7.51564 7.77577 7.94718 8.49179 9.01647 9.67704 10.54846 11.37543 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034039 B = 0.004120 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.388837 B = 6793.923366 C = 6951.108120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 N -0.594 5.594 4 C 0.524 3.476 5 O -0.525 6.525 6 C 0.056 3.944 7 H 0.092 0.908 8 O -0.345 6.345 9 C 0.041 3.959 10 C -0.150 4.150 11 C -0.113 4.113 12 H 0.091 0.909 13 C -0.153 4.153 14 C 0.092 3.908 15 C 0.104 3.896 16 N -0.605 5.605 17 C -0.224 4.224 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.157 3.843 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.255 0.745 42 H 0.031 0.969 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -5.564 -17.923 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 N -0.328 5.328 4 C 0.310 3.690 5 O -0.401 6.401 6 C -0.005 4.005 7 H 0.109 0.891 8 O -0.263 6.263 9 C -0.036 4.036 10 C -0.188 4.188 11 C -0.132 4.132 12 H 0.110 0.890 13 C -0.211 4.211 14 C -0.011 4.011 15 C -0.023 4.023 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.030 3.970 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.812 -4.732 -17.572 19.104 hybrid contribution -0.021 -0.400 0.985 1.063 sum -5.833 -5.132 -16.587 18.317 Atomic orbital electron populations 1.22423 0.96137 1.02550 1.02487 1.21745 0.94362 0.83091 1.03884 1.48077 1.64710 1.13736 1.06300 1.19998 0.78738 0.85841 0.84373 1.90697 1.43405 1.19650 1.86307 1.23151 0.99346 0.89438 0.88592 0.89083 1.89266 1.94893 1.28333 1.13824 1.23457 0.98111 0.93676 0.88310 1.23053 1.00923 0.99540 0.95243 1.22494 0.96533 0.98886 0.95294 0.89045 1.21968 0.94722 1.02403 1.01971 1.24034 0.98470 0.99161 0.79467 1.23139 0.92768 0.98295 0.88090 1.45622 1.14299 1.70354 1.02836 1.18946 1.00969 1.34595 0.80642 0.90118 1.24790 0.96442 1.00782 0.98211 1.69803 1.06701 1.45795 1.34431 0.86174 0.76939 0.77881 0.84606 1.21162 1.21521 1.20991 1.22641 0.97333 0.94027 0.82964 0.91021 0.92942 0.91571 0.90901 0.88615 0.88834 0.92184 0.90146 0.90274 0.91371 0.92028 0.91597 0.86627 0.93665 0.94017 0.93509 0.95105 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.89 37.16 0.37 -1.60 16 2 C 0.09 1.18 5.18 -4.04 -0.02 1.16 16 3 N -0.59 -9.65 2.33 -167.91 -0.39 -10.04 16 4 C 0.52 8.89 4.88 -10.99 -0.05 8.84 16 5 O -0.53 -11.20 16.07 -13.24 -0.21 -11.42 16 6 C 0.06 0.73 2.74 -27.11 -0.07 0.66 16 7 H 0.09 1.01 5.72 -51.93 -0.30 0.71 16 8 O -0.35 -5.03 10.95 -54.03 -0.59 -5.62 16 9 C 0.04 0.39 7.63 37.94 0.29 0.68 16 10 C -0.15 -1.25 6.74 -25.16 -0.17 -1.42 16 11 C -0.11 -1.17 2.75 -89.05 -0.24 -1.42 16 12 H 0.09 0.75 6.81 -51.93 -0.35 0.40 16 13 C -0.15 -1.88 8.11 37.16 0.30 -1.58 16 14 C 0.09 1.84 4.43 -70.15 -0.31 1.53 16 15 C 0.10 2.15 8.38 -2.98 -0.02 2.13 16 16 N -0.60 -15.46 3.70 -178.10 -0.66 -16.12 16 17 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 21 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.16 3.63 7.00 -2.97 -0.02 3.61 16 26 H 0.07 0.92 5.75 -51.93 -0.30 0.62 16 27 H 0.05 0.52 6.18 -51.93 -0.32 0.20 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.75 5.10 -51.93 -0.26 0.48 16 30 H 0.10 1.36 5.76 -51.93 -0.30 1.07 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.98 6.73 -51.93 -0.35 0.63 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.12 2.58 7.19 -51.93 -0.37 2.21 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.80 5.23 -51.93 -0.27 0.53 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.70 5.98 -51.93 -0.31 0.39 16 43 H 0.08 2.02 7.16 -51.93 -0.37 1.64 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -33.47 327.70 -7.94 -41.42 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.42 Total: 0.35 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.22 Total: 5.90 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.42 Total: -52.62 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.80 Total: -17.04 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.47 -7.94 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951773656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.724 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds