Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47228 * 2 1 4 4 C 1.34779 * 119.99768 * 275.68644 * 3 2 1 5 5 O 1.21272 * 120.00290 * 5.05299 * 4 3 2 6 6 C 1.50707 * 119.99650 * 185.05025 * 4 3 2 7 7 H 1.08993 * 109.87094 * 305.84266 * 6 4 3 8 8 C 1.54106 * 109.87636 * 66.85092 * 6 4 3 9 9 C 1.54811 * 104.18818 * 121.45204 * 8 6 4 10 10 C 1.54997 * 102.09206 * 20.87598 * 9 8 6 11 11 H 1.09004 * 110.61333 * 81.63353 * 10 9 8 12 12 C 1.52997 * 110.61770 * 204.47279 * 10 9 8 13 13 O 1.43747 * 109.87761 * 184.83130 * 6 4 3 14 14 C 1.46494 * 120.00059 * 95.68245 * 3 2 1 15 15 C 1.53506 * 114.20560 * 300.00215 * 14 3 2 16 16 N 1.47067 * 87.98325 * 87.71718 * 15 14 3 17 17 C 1.36932 * 136.05737 * 207.07983 * 16 15 14 18 18 H 1.08004 * 119.99994 * 7.69187 * 17 16 15 19 19 C 1.38815 * 120.00086 * 187.68192 * 17 16 15 20 20 N 1.31614 * 120.00051 * 20.39531 * 19 17 16 21 21 Si 1.86800 * 120.00028 * 200.39618 * 19 17 16 22 22 H 1.48505 * 109.47234 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47172 * 240.00323 * 21 19 17 24 24 H 1.48496 * 109.47441 * 119.99859 * 21 19 17 25 25 C 1.47071 * 87.88395 * 27.34321 * 16 15 14 26 26 H 1.08999 * 109.47009 * 303.51421 * 1 2 3 27 27 H 1.08993 * 109.47264 * 63.52140 * 1 2 3 28 28 H 1.09002 * 109.46753 * 183.52306 * 1 2 3 29 29 H 1.08998 * 109.47156 * 240.00524 * 2 1 3 30 30 H 1.08994 * 109.47662 * 120.00237 * 2 1 3 31 31 H 1.08999 * 110.48392 * 240.12705 * 8 6 4 32 32 H 1.09002 * 110.48353 * 2.77032 * 8 6 4 33 33 H 1.08995 * 110.90357 * 139.07441 * 9 8 6 34 34 H 1.08994 * 110.90629 * 262.68153 * 9 8 6 35 35 H 1.08995 * 109.46985 * 60.00349 * 12 10 9 36 36 H 1.09003 * 109.47190 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47309 * 300.00208 * 12 10 9 38 38 H 1.09004 * 113.28499 * 166.93767 * 14 3 2 39 39 H 1.08994 * 113.46623 * 332.93943 * 15 14 3 40 40 H 1.09001 * 113.46654 * 202.49394 * 15 14 3 41 41 H 0.97000 * 120.00050 * 5.82795 * 20 19 17 42 42 H 1.08998 * 113.47137 * 87.44027 * 25 16 15 43 43 H 1.09004 * 113.46654 * 217.87765 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1339 2.0551 -1.1615 5 8 1.7483 1.5521 -2.1954 6 6 2.7424 3.4338 -1.1754 7 1 2.2204 4.0762 -0.4663 8 6 4.2363 3.3509 -0.8062 9 6 4.9636 3.9637 -2.0277 10 6 3.8392 4.8013 -2.6885 11 1 3.7324 5.7634 -2.1874 12 6 4.1208 5.0004 -4.1791 13 8 2.6561 3.9928 -2.4969 14 6 2.3809 2.0299 1.2624 15 6 1.2298 2.1277 2.2732 16 7 1.6141 0.7946 2.7612 17 6 0.9772 -0.2543 3.3687 18 1 -0.0971 -0.2428 3.4796 19 6 1.7123 -1.3326 3.8419 20 7 2.9994 -1.1975 4.0810 21 14 0.8745 -2.9756 4.1393 22 1 -0.5662 -2.8659 3.7963 23 1 1.0152 -3.3513 5.5691 24 1 1.5083 -4.0155 3.2896 25 6 2.9849 1.0867 2.3157 26 1 -0.3633 0.5674 0.8568 27 1 -0.3633 0.4582 -0.9198 28 1 -0.3633 -1.0258 0.0632 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.4403 3.9345 0.0915 32 1 4.5371 2.3129 -0.6642 33 1 5.7881 4.6017 -1.7096 34 1 5.3152 3.1835 -2.7027 35 1 4.1736 4.0295 -4.6717 36 1 3.3203 5.5911 -4.6244 37 1 5.0695 5.5228 -4.3031 38 1 2.9359 2.9581 1.1261 39 1 0.2445 2.1521 1.8079 40 1 1.3671 2.9168 3.0125 41 1 3.4173 -0.3252 4.0080 42 1 3.5850 1.6013 3.0662 43 1 3.4949 0.2242 1.8866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951779208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = -14.301504 kcal Electronic energy + Delta-G solvation = -23912.005425 eV Core-core repulsion = 20573.718056 eV Total energy + Delta-G solvation = -3338.287369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59249 -39.14172 -37.71078 -34.23602 -32.43444 -32.40775 -32.05670 -30.03342 -27.36752 -26.64198 -25.13808 -23.46306 -22.99068 -21.78523 -21.36714 -20.34613 -18.37876 -17.64218 -17.10346 -16.52906 -16.02089 -15.32193 -14.75204 -14.38149 -14.27552 -14.03893 -13.85363 -13.76437 -13.37072 -13.09534 -12.88020 -12.61019 -12.41947 -12.20116 -11.84661 -11.64938 -11.56164 -11.45724 -11.09224 -10.95863 -10.88634 -10.77954 -10.69569 -10.23120 -10.11882 -10.05822 -9.86375 -9.48942 -9.19971 -8.65569 -8.14542 -7.11639 -6.19532 -3.21403 2.83460 3.09351 3.46621 3.50039 3.61368 3.85213 4.35283 4.44278 4.51876 4.69287 4.75094 4.90410 4.98238 5.06998 5.17673 5.20243 5.33096 5.36193 5.51277 5.56501 5.64616 5.71350 5.81103 5.83561 5.85206 5.91791 5.99241 6.05388 6.17508 6.21092 6.32942 6.47978 6.52489 6.56910 6.75589 6.82516 6.92516 7.08873 7.18284 7.88342 8.24740 8.51264 8.82686 9.66831 10.38966 11.20916 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031794 B = 0.004627 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.460781 B = 6050.317224 C = 6408.710312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.118 3.882 3 N -0.572 5.572 4 C 0.512 3.488 5 O -0.529 6.529 6 C 0.062 3.938 7 H 0.091 0.909 8 C -0.146 4.146 9 C -0.148 4.148 10 C 0.068 3.932 11 H 0.071 0.929 12 C -0.145 4.145 13 O -0.346 6.346 14 C 0.079 3.921 15 C 0.101 3.899 16 N -0.607 5.607 17 C -0.310 4.310 18 H 0.075 0.925 19 C -0.030 4.030 20 N -0.930 5.930 21 Si 1.072 2.928 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.289 1.289 25 C 0.123 3.877 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.044 0.956 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 12.037 -9.842 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.004 4.004 3 N -0.305 5.305 4 C 0.299 3.701 5 O -0.405 6.405 6 C 0.001 3.999 7 H 0.109 0.891 8 C -0.184 4.184 9 C -0.186 4.186 10 C 0.010 3.990 11 H 0.089 0.911 12 C -0.203 4.203 13 O -0.264 6.264 14 C -0.027 4.027 15 C -0.026 4.026 16 N -0.334 5.334 17 C -0.436 4.436 18 H 0.093 0.907 19 C -0.230 4.230 20 N -0.573 5.573 21 Si 0.902 3.098 22 H -0.218 1.218 23 H -0.221 1.221 24 H -0.216 1.216 25 C -0.004 4.004 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.504 9.905 -10.004 14.507 hybrid contribution -0.158 1.768 0.205 1.787 sum 3.347 11.673 -9.799 15.604 Atomic orbital electron populations 1.21974 0.96125 1.01788 1.01072 1.21505 0.94762 0.80851 1.03244 1.47508 1.63790 1.14462 1.04745 1.20334 0.79275 0.86908 0.83589 1.90671 1.48632 1.69174 1.32064 1.22612 0.96875 0.93625 0.86811 0.89097 1.22963 0.92711 1.03523 0.99198 1.23189 0.98343 0.99988 0.97093 1.23223 0.84452 0.94136 0.97155 0.91068 1.21757 1.01670 1.02892 0.93937 1.89048 1.41591 1.64879 1.30914 1.22814 0.99026 0.96358 0.84502 1.22906 0.96873 0.89581 0.93251 1.45994 1.05043 1.11363 1.71009 1.19773 0.91698 0.95792 1.36361 0.90729 1.25710 0.96670 1.02561 0.98012 1.70731 1.11473 1.26941 1.48144 0.83387 0.74265 0.75699 0.76411 1.21776 1.22145 1.21575 1.22631 0.90023 0.95782 0.91932 0.91743 0.93931 0.92361 0.92228 0.87116 0.89445 0.89628 0.89877 0.90206 0.91552 0.91863 0.91152 0.88774 0.93245 0.94231 0.92348 0.93804 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 10.15 37.16 0.38 -2.51 16 2 C 0.12 2.32 5.25 -4.04 -0.02 2.30 16 3 N -0.57 -10.23 2.73 -165.73 -0.45 -10.68 16 4 C 0.51 9.17 6.77 -10.98 -0.07 9.10 16 5 O -0.53 -11.40 16.17 -13.98 -0.23 -11.62 16 6 C 0.06 0.87 2.93 -27.30 -0.08 0.79 16 7 H 0.09 1.13 7.55 -51.93 -0.39 0.74 16 8 C -0.15 -1.63 5.16 -25.20 -0.13 -1.76 16 9 C -0.15 -1.44 6.59 -24.72 -0.16 -1.60 16 10 C 0.07 0.72 3.97 -25.68 -0.10 0.62 16 11 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 12 C -0.15 -1.32 9.66 37.16 0.36 -0.96 16 13 O -0.35 -5.23 10.46 -54.77 -0.57 -5.81 16 14 C 0.08 1.31 4.19 -67.68 -0.28 1.03 16 15 C 0.10 1.90 7.83 -8.50 -0.07 1.83 16 16 N -0.61 -13.91 2.38 -184.60 -0.44 -14.35 16 17 C -0.31 -8.09 10.06 -15.06 -0.15 -8.24 16 18 H 0.07 1.97 7.91 -52.48 -0.42 1.56 16 19 C -0.03 -0.80 5.44 -17.43 -0.09 -0.90 16 20 N -0.93 -26.97 13.31 55.49 0.74 -26.23 16 21 Si 1.07 24.74 29.97 -169.99 -5.09 19.64 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.12 2.50 5.21 -8.37 -0.04 2.46 16 26 H 0.06 1.29 6.14 -51.93 -0.32 0.97 16 27 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.17 7.68 -51.93 -0.40 0.78 16 30 H 0.11 2.49 5.07 -51.93 -0.26 2.23 16 31 H 0.09 0.78 7.64 -51.93 -0.40 0.38 16 32 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 1.24 4.96 -51.93 -0.26 0.98 16 39 H 0.05 0.94 6.67 -51.93 -0.35 0.60 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.27 7.58 6.07 -40.82 -0.25 7.33 16 42 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 43 H 0.06 1.32 7.23 -51.93 -0.38 0.94 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -32.01 335.25 -8.29 -40.30 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.82 Total: 1.54 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.47 Total: 2.15 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.15 Total: -51.26 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.80 Total: -17.43 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.01 -8.29 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951779208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.998 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds