Wall clock time and date at job start Tue Mar 31 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46973 * 2 1 4 4 C 1.34776 * 119.99567 * 84.29780 * 3 2 1 5 5 O 1.21273 * 120.00374 * 5.42503 * 4 3 2 6 6 C 1.50707 * 119.99765 * 185.43011 * 4 3 2 7 7 H 1.08996 * 110.80428 * 38.30128 * 6 4 3 8 8 C 1.54816 * 110.90485 * 274.67700 * 6 4 3 9 9 C 1.54102 * 104.18569 * 220.92003 * 8 6 4 10 10 O 1.43744 * 107.29418 * 357.96932 * 9 8 6 11 11 C 1.44419 * 106.99881 * 26.48779 * 10 9 8 12 12 H 1.09000 * 110.60154 * 78.47511 * 11 10 9 13 13 C 1.53000 * 110.65097 * 201.48013 * 11 10 9 14 14 C 1.46498 * 120.00068 * 264.29805 * 3 2 1 15 15 C 1.53943 * 113.74402 * 38.73900 * 14 3 2 16 16 N 1.47810 * 86.03782 * 222.08399 * 15 14 3 17 17 C 1.36932 * 134.45513 * 204.64175 * 16 15 14 18 18 H 1.08004 * 119.99603 * 181.03080 * 17 16 15 19 19 C 1.38812 * 120.00325 * 1.03256 * 17 16 15 20 20 N 1.31618 * 119.99914 * 7.97391 * 19 17 16 21 21 Si 1.86803 * 120.00183 * 187.97954 * 19 17 16 22 22 H 1.48506 * 109.47204 * 94.88519 * 21 19 17 23 23 H 1.48491 * 109.47149 * 214.88869 * 21 19 17 24 24 H 1.48500 * 109.46950 * 334.88693 * 21 19 17 25 25 C 1.47581 * 91.04904 * 24.55331 * 16 15 14 26 26 H 1.08998 * 109.47248 * 182.04752 * 1 2 3 27 27 H 1.09004 * 109.47320 * 302.04171 * 1 2 3 28 28 H 1.09006 * 109.47594 * 62.04291 * 1 2 3 29 29 H 1.08996 * 109.47001 * 240.00148 * 2 1 3 30 30 H 1.08997 * 109.47172 * 120.00174 * 2 1 3 31 31 H 1.08995 * 110.48384 * 339.59538 * 8 6 4 32 32 H 1.09003 * 110.48767 * 102.24586 * 8 6 4 33 33 H 1.09003 * 109.87549 * 117.38979 * 9 8 6 34 34 H 1.08997 * 109.88072 * 238.39410 * 9 8 6 35 35 H 1.09003 * 109.47112 * 174.06834 * 13 11 10 36 36 H 1.09001 * 109.47498 * 294.06918 * 13 11 10 37 37 H 1.08995 * 109.47405 * 54.06971 * 13 11 10 38 38 H 1.09004 * 112.94546 * 170.33677 * 14 3 2 39 39 H 1.09001 * 113.77247 * 336.35326 * 15 14 3 40 40 H 1.09007 * 113.76584 * 107.74777 * 15 14 3 41 41 H 0.97001 * 119.99844 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.76622 * 221.15131 * 25 16 15 43 43 H 1.08999 * 113.77358 * 89.75409 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1336 2.0552 1.1615 5 8 1.9278 1.4891 2.2140 6 6 2.5180 3.5123 1.1522 7 1 2.0458 4.0320 0.3185 8 6 4.0567 3.6774 1.1057 9 6 4.3415 4.8386 2.0780 10 8 3.0740 5.3027 2.5722 11 6 2.1588 4.1878 2.5000 12 1 2.3248 3.5010 3.3299 13 6 0.7098 4.6791 2.4871 14 6 2.3813 2.0298 -1.2624 15 6 1.4419 1.6811 -2.4310 16 7 2.6679 1.5718 -3.2494 17 6 2.9426 1.6898 -4.5857 18 1 3.9507 1.5438 -4.9447 19 6 1.9254 1.9970 -5.4790 20 7 0.7334 2.3287 -5.0302 21 14 2.2484 1.9395 -7.3180 22 1 1.8383 0.6156 -7.8515 23 1 1.4674 3.0080 -7.9913 24 1 3.6962 2.1490 -7.5731 25 6 3.4768 1.2867 -2.0484 26 1 -0.3633 -1.0270 0.0367 27 1 -0.3634 0.5452 0.8711 28 1 -0.3634 0.4818 -0.9078 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.5485 2.7660 1.4454 32 1 4.3825 3.9350 0.0979 33 1 4.9557 4.4859 2.9066 34 1 4.8546 5.6442 1.5530 35 1 0.0409 3.8336 2.3266 36 1 0.4773 5.1502 3.4421 37 1 0.5790 5.4036 1.6833 38 1 2.5678 3.0982 -1.1530 39 1 0.9133 0.7365 -2.3030 40 1 0.7862 2.5001 -2.7271 41 1 0.0227 2.5437 -5.6544 42 1 4.4429 1.7915 -2.0395 43 1 3.5473 0.2260 -1.8077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957044622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:26 Heat of formation + Delta-G solvation = -24.381850 kcal Electronic energy + Delta-G solvation = -23663.265812 eV Core-core repulsion = 20324.541326 eV Total energy + Delta-G solvation = -3338.724486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60168 -38.93701 -37.66139 -34.58142 -32.73520 -32.04937 -31.58415 -30.29981 -27.55555 -26.52037 -24.97488 -23.57858 -23.42053 -21.94030 -21.28495 -19.96589 -18.34396 -17.69957 -16.81280 -16.03448 -15.98709 -15.53725 -15.12340 -14.84173 -14.51404 -13.96637 -13.89540 -13.63019 -13.38510 -12.80998 -12.56207 -12.44643 -12.35001 -12.13795 -11.92634 -11.69308 -11.63215 -11.37722 -11.29592 -11.02142 -10.91958 -10.84270 -10.76496 -10.61122 -10.41121 -10.13006 -9.73799 -9.65757 -9.43132 -8.90822 -8.24410 -7.00914 -5.88285 -3.21686 2.73668 3.17933 3.33238 3.39058 3.40619 3.78449 4.35027 4.48696 4.60881 4.70524 4.91597 5.05432 5.14650 5.16674 5.29096 5.36016 5.38000 5.42102 5.53995 5.56184 5.59981 5.63627 5.70447 5.74436 5.87590 5.88053 5.91091 6.04908 6.12351 6.15519 6.17370 6.32714 6.37763 6.51953 6.80540 6.85826 7.05359 7.13085 7.41191 7.73082 7.86082 8.36439 8.92151 9.59196 10.44389 11.27752 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.004828 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.055920 B = 5797.866902 C = 6382.568024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.591 5.591 4 C 0.527 3.473 5 O -0.551 6.551 6 C -0.144 4.144 7 H 0.110 0.890 8 C -0.142 4.142 9 C 0.051 3.949 10 O -0.375 6.375 11 C 0.091 3.909 12 H 0.086 0.914 13 C -0.145 4.145 14 C 0.079 3.921 15 C 0.149 3.851 16 N -0.606 5.606 17 C -0.226 4.226 18 H 0.082 0.918 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.109 3.891 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.255 0.745 42 H 0.047 0.953 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 1.573 12.693 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.323 5.323 4 C 0.315 3.685 5 O -0.430 6.430 6 C -0.165 4.165 7 H 0.128 0.872 8 C -0.180 4.180 9 C -0.026 4.026 10 O -0.295 6.295 11 C 0.033 3.967 12 H 0.104 0.896 13 C -0.202 4.202 14 C -0.025 4.025 15 C 0.023 3.977 16 N -0.332 5.332 17 C -0.353 4.353 18 H 0.100 0.900 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.018 4.018 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.632 1.546 12.955 13.309 hybrid contribution 0.207 -0.397 -1.371 1.442 sum 2.839 1.148 11.584 11.982 Atomic orbital electron populations 1.22201 0.95857 1.01919 1.02681 1.21360 0.94511 0.82403 1.02719 1.48183 1.63431 1.13916 1.06737 1.20160 0.76697 0.88116 0.83566 1.90640 1.51617 1.69898 1.30872 1.22957 0.97842 0.94442 1.01282 0.87156 1.22891 0.93636 0.99718 1.01748 1.23098 0.86774 0.96547 0.96155 1.88869 1.20638 1.34485 1.85484 1.23005 0.90794 0.87463 0.95406 0.89617 1.21761 0.93555 1.02000 1.02869 1.24200 0.99450 0.97513 0.81376 1.22829 0.90946 0.99803 0.84099 1.45691 1.03938 1.82006 1.01606 1.18980 0.94638 1.41678 0.80007 0.90038 1.24775 0.95725 1.01465 0.98166 1.69819 1.02375 1.50886 1.33247 0.86108 0.77465 0.77391 0.84853 1.21571 1.21627 1.20485 1.22974 0.94910 0.97098 0.86831 0.92045 0.92689 0.91440 0.89936 0.90715 0.90259 0.89268 0.92330 0.89562 0.90967 0.91751 0.91645 0.87211 0.94522 0.89962 0.93493 0.93502 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.97 37.16 0.37 -2.02 16 2 C 0.11 1.68 5.16 -4.04 -0.02 1.66 16 3 N -0.59 -9.26 2.70 -167.91 -0.45 -9.71 16 4 C 0.53 8.18 6.76 -10.98 -0.07 8.10 16 5 O -0.55 -9.75 15.39 5.56 0.09 -9.67 16 6 C -0.14 -1.93 1.89 -89.76 -0.17 -2.10 16 7 H 0.11 1.49 6.64 -51.93 -0.35 1.14 16 8 C -0.14 -1.66 6.36 -25.20 -0.16 -1.82 16 9 C 0.05 0.56 7.70 37.73 0.29 0.86 16 10 O -0.38 -5.06 11.23 -35.23 -0.40 -5.46 16 11 C 0.09 1.20 3.24 -25.68 -0.08 1.12 16 12 H 0.09 1.22 7.24 -51.93 -0.38 0.84 16 13 C -0.14 -1.72 9.66 37.16 0.36 -1.36 16 14 C 0.08 1.36 4.20 -70.15 -0.29 1.06 16 15 C 0.15 3.22 6.72 -2.84 -0.02 3.20 16 16 N -0.61 -14.47 3.70 -177.88 -0.66 -15.13 16 17 C -0.23 -6.01 10.69 -15.06 -0.16 -6.17 16 18 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 19 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 20 N -0.92 -25.93 11.35 55.49 0.63 -25.30 16 21 Si 0.91 21.32 29.56 -169.99 -5.03 16.30 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.11 2.06 8.43 -2.97 -0.03 2.03 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.05 6.41 -51.93 -0.33 0.71 16 29 H 0.08 1.26 6.14 -51.93 -0.32 0.94 16 30 H 0.07 1.10 7.53 -51.93 -0.39 0.71 16 31 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 32 H 0.09 0.99 8.02 -51.93 -0.42 0.57 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.82 5.61 -51.93 -0.29 1.53 16 39 H 0.04 0.80 5.26 -51.93 -0.27 0.52 16 40 H 0.08 2.01 6.97 -51.92 -0.36 1.64 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.69 6.93 -51.93 -0.36 0.33 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -30.12 337.41 -7.62 -37.74 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.80 Total: 1.80 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.08 Total: 4.35 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.48 Total: -50.14 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.31 Total: -15.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.12 -7.62 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957044622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.354 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds