Wall clock time and date at job start Tue Mar 31 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46807 * 2 1 4 4 C 1.34773 * 120.00511 * 83.70879 * 3 2 1 5 5 O 1.21277 * 120.00662 * 185.00516 * 4 3 2 6 6 C 1.50698 * 119.99582 * 5.00994 * 4 3 2 7 7 H 1.09002 * 110.45918 * 1.33982 * 6 4 3 8 8 C 1.54504 * 110.51525 * 124.09628 * 6 4 3 9 9 C 1.54479 * 104.06595 * 118.64149 * 8 6 4 10 10 O 1.44420 * 104.80239 * 336.02311 * 9 8 6 11 11 C 1.44426 * 105.27758 * 40.51190 * 10 9 8 12 12 H 1.08999 * 110.46764 * 78.36227 * 11 10 9 13 13 C 1.52995 * 110.37624 * 200.65875 * 11 10 9 14 14 C 1.46504 * 119.99682 * 263.70668 * 3 2 1 15 15 C 1.53943 * 113.74324 * 38.74380 * 14 3 2 16 16 N 1.47809 * 86.03711 * 222.08313 * 15 14 3 17 17 C 1.36938 * 134.45549 * 204.64270 * 16 15 14 18 18 H 1.08000 * 120.00051 * 179.86438 * 17 16 15 19 19 C 1.38813 * 120.00010 * 359.86655 * 17 16 15 20 20 N 1.31621 * 120.00049 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99935 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46943 * 90.00383 * 21 19 17 23 23 H 1.48502 * 109.46859 * 210.00235 * 21 19 17 24 24 H 1.48496 * 109.47006 * 330.00058 * 21 19 17 25 25 C 1.47573 * 91.05355 * 24.54779 * 16 15 14 26 26 H 1.09001 * 109.47199 * 60.00312 * 1 2 3 27 27 H 1.08999 * 109.47014 * 299.99925 * 1 2 3 28 28 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47674 * 119.99451 * 2 1 3 30 30 H 1.08999 * 109.47486 * 240.00317 * 2 1 3 31 31 H 1.09002 * 110.51516 * 237.28936 * 8 6 4 32 32 H 1.09005 * 110.51156 * 359.97438 * 8 6 4 33 33 H 1.08996 * 110.37190 * 217.19217 * 9 8 6 34 34 H 1.09002 * 110.36993 * 94.85385 * 9 8 6 35 35 H 1.08997 * 109.47368 * 169.56216 * 13 11 10 36 36 H 1.09004 * 109.47041 * 289.56324 * 13 11 10 37 37 H 1.09002 * 109.47084 * 49.55566 * 13 11 10 38 38 H 1.09004 * 112.94155 * 170.33294 * 14 3 2 39 39 H 1.09002 * 113.76803 * 336.34651 * 15 14 3 40 40 H 1.09004 * 113.77069 * 107.74223 * 15 14 3 41 41 H 0.96998 * 120.00065 * 179.97438 * 20 19 17 42 42 H 1.09002 * 113.77469 * 221.15718 * 25 16 15 43 43 H 1.09007 * 113.87282 * 89.76583 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1223 2.0593 1.1601 5 8 2.4393 3.2299 1.1521 6 6 1.8449 1.3628 2.4673 7 1 1.5982 0.3150 2.2959 8 6 3.0580 1.4883 3.4159 9 6 2.5032 2.2576 4.6352 10 8 1.3646 2.9852 4.1255 11 6 0.7005 2.0712 3.2258 12 1 0.1108 1.3458 3.7863 13 6 -0.1909 2.8394 2.2481 14 6 2.3935 2.0255 -1.2612 15 6 1.4654 1.6727 -2.4376 16 7 2.6992 1.5605 -3.2437 17 6 2.9869 1.6739 -4.5777 18 1 4.0017 1.5453 -4.9241 19 6 1.9741 1.9541 -5.4847 20 7 0.7374 2.1113 -5.0625 21 14 2.3667 2.1094 -7.3045 22 1 2.2405 0.7797 -7.9533 23 1 1.4171 3.0606 -7.9362 24 1 3.7542 2.6116 -7.4704 25 6 3.4965 1.2798 -2.0340 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8935 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.4123 0.5020 3.7155 32 1 3.8587 2.0538 2.9391 33 1 3.2529 2.9482 5.0213 34 1 2.1911 1.5611 5.4133 35 1 -0.5372 2.1648 1.4651 36 1 -1.0492 3.2469 2.7824 37 1 0.3785 3.6539 1.8004 38 1 2.5789 3.0943 -1.1536 39 1 0.9357 0.7284 -2.3114 40 1 0.8126 2.4906 -2.7428 41 1 0.0298 2.3075 -5.6962 42 1 4.4625 1.7846 -2.0175 43 1 3.5661 0.2202 -1.7875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957044623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:28 Heat of formation + Delta-G solvation = -15.727286 kcal Electronic energy + Delta-G solvation = -23743.468630 eV Core-core repulsion = 20405.119434 eV Total energy + Delta-G solvation = -3338.349196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74274 -38.89772 -37.28721 -35.05923 -32.54005 -31.88370 -31.62264 -30.16189 -27.70447 -26.34368 -24.85128 -23.63539 -23.41319 -22.18672 -21.63129 -19.28691 -18.27424 -17.73626 -16.80466 -16.12380 -16.01749 -15.58949 -15.16539 -15.09046 -14.71384 -13.96571 -13.75040 -13.43244 -13.26107 -12.75523 -12.59106 -12.42277 -12.33676 -12.17962 -11.76856 -11.56302 -11.50249 -11.29369 -11.17533 -11.12494 -10.97644 -10.89306 -10.80383 -10.66528 -10.24132 -10.07585 -9.87106 -9.56921 -9.27404 -8.82103 -8.14024 -6.92750 -5.80643 -3.13365 2.80755 3.23364 3.38362 3.43253 3.45072 3.79142 4.38599 4.44515 4.53812 4.68332 4.88418 4.93898 5.05728 5.17407 5.21709 5.25464 5.32093 5.36852 5.45449 5.47025 5.52342 5.61755 5.66413 5.76208 5.82266 5.88523 5.90810 6.00963 6.07445 6.18813 6.28511 6.38913 6.46434 6.58494 6.78985 6.82026 7.18034 7.34651 7.50414 7.79154 7.93562 8.50234 9.00540 9.66677 10.53675 11.36544 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034380 B = 0.004095 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.225602 B = 6835.344022 C = 6973.645141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 N -0.596 5.596 4 C 0.525 3.475 5 O -0.534 6.534 6 C -0.150 4.150 7 H 0.104 0.896 8 C -0.139 4.139 9 C 0.049 3.951 10 O -0.362 6.362 11 C 0.094 3.906 12 H 0.074 0.926 13 C -0.167 4.167 14 C 0.090 3.910 15 C 0.156 3.844 16 N -0.606 5.606 17 C -0.224 4.224 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.108 3.892 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -6.045 18.110 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.313 3.687 5 O -0.411 6.411 6 C -0.172 4.172 7 H 0.122 0.878 8 C -0.177 4.177 9 C -0.028 4.028 10 O -0.281 6.281 11 C 0.036 3.964 12 H 0.092 0.908 13 C -0.223 4.223 14 C -0.013 4.013 15 C 0.030 3.970 16 N -0.333 5.333 17 C -0.351 4.351 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.019 4.019 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.186 -5.125 17.776 18.501 hybrid contribution 0.194 -0.504 -1.143 1.264 sum 0.007 -5.629 16.633 17.559 Atomic orbital electron populations 1.22435 0.95834 1.02285 1.03233 1.21565 0.94608 0.83049 1.02931 1.48216 1.63895 1.13766 1.06925 1.20126 0.76980 0.86876 0.84760 1.90686 1.47646 1.15778 1.86991 1.22963 0.97777 1.01703 0.94732 0.87817 1.22890 0.97683 1.01532 0.95586 1.23347 0.88807 0.95447 0.95245 1.89189 1.40545 1.37185 1.61196 1.22777 0.92383 0.91221 0.89992 0.90800 1.22138 0.99509 1.02198 0.98502 1.24011 0.98343 0.98445 0.80527 1.22736 0.90694 0.99236 0.84313 1.45703 1.04144 1.81995 1.01424 1.18994 0.94046 1.41927 0.80150 0.90096 1.24789 0.95306 1.01988 0.98158 1.69813 0.99439 1.54180 1.33271 0.86098 0.77404 0.77465 0.84665 1.21588 1.21561 1.20550 1.22971 0.95292 0.96737 0.86917 0.90811 0.92543 0.91697 0.91111 0.89348 0.90044 0.89784 0.89017 0.92375 0.90698 0.91923 0.89806 0.86752 0.94697 0.90668 0.93561 0.93627 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.90 37.16 0.37 -1.73 16 2 C 0.10 1.28 4.79 -4.04 -0.02 1.26 16 3 N -0.60 -9.42 2.71 -167.90 -0.45 -9.87 16 4 C 0.53 8.30 4.86 -10.99 -0.05 8.25 16 5 O -0.53 -10.57 14.64 5.56 0.08 -10.49 16 6 C -0.15 -1.76 2.82 -90.20 -0.25 -2.01 16 7 H 0.10 0.96 5.47 -51.93 -0.28 0.68 16 8 C -0.14 -1.44 6.64 -25.17 -0.17 -1.61 16 9 C 0.05 0.49 7.63 37.93 0.29 0.78 16 10 O -0.36 -4.99 11.34 -35.23 -0.40 -5.39 16 11 C 0.09 1.13 3.77 -25.95 -0.10 1.03 16 12 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 13 C -0.17 -2.18 8.54 37.16 0.32 -1.87 16 14 C 0.09 1.79 4.41 -70.15 -0.31 1.48 16 15 C 0.16 3.60 6.57 -2.84 -0.02 3.58 16 16 N -0.61 -15.49 3.70 -177.89 -0.66 -16.14 16 17 C -0.22 -6.26 10.70 -15.06 -0.16 -6.43 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -27.04 11.39 55.49 0.63 -26.41 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C 0.11 2.24 8.43 -2.97 -0.03 2.21 16 26 H 0.07 1.06 6.49 -51.93 -0.34 0.72 16 27 H 0.06 0.60 5.47 -51.93 -0.28 0.31 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.68 6.07 -51.93 -0.32 0.37 16 30 H 0.09 1.23 6.12 -51.93 -0.32 0.91 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.04 7.57 -51.93 -0.39 0.64 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.93 5.60 -51.93 -0.29 0.64 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.38 6.30 -51.93 -0.33 1.05 16 38 H 0.11 2.52 7.21 -51.93 -0.37 2.14 16 39 H 0.04 0.78 5.32 -51.93 -0.28 0.51 16 40 H 0.08 1.97 7.16 -51.93 -0.37 1.60 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.65 6.94 -51.92 -0.36 0.29 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -32.95 328.10 -7.54 -40.49 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.44 Total: 1.14 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.23 Total: 4.69 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.48 Total: -52.42 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.32 Total: -15.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.95 -7.54 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957044623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.766 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds