Wall clock time and date at job start Tue Mar 31 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47061 * 2 1 4 4 C 1.34774 * 119.99918 * 274.37623 * 3 2 1 5 5 O 1.21284 * 120.00029 * 354.98568 * 4 3 2 6 6 C 1.50703 * 120.00122 * 174.98758 * 4 3 2 7 7 H 1.08999 * 110.43103 * 325.90647 * 6 4 3 8 8 C 1.54805 * 110.48874 * 88.59695 * 6 4 3 9 9 C 1.54996 * 102.09313 * 97.79354 * 8 6 4 10 10 O 1.44384 * 103.48719 * 37.02674 * 9 8 6 11 11 C 1.43741 * 106.97506 * 319.93440 * 10 9 8 12 12 H 1.08995 * 110.00663 * 267.02257 * 11 10 9 13 13 C 1.52996 * 109.87727 * 145.93955 * 11 10 9 14 14 C 1.46495 * 119.99830 * 94.37789 * 3 2 1 15 15 C 1.53495 * 114.20750 * 60.00147 * 14 3 2 16 16 N 1.47073 * 87.98425 * 220.34306 * 15 14 3 17 17 C 1.36937 * 136.05550 * 207.08594 * 16 15 14 18 18 H 1.07998 * 119.99795 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99760 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00247 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47326 * 270.00801 * 21 19 17 23 23 H 1.48502 * 109.46685 * 30.00825 * 21 19 17 24 24 H 1.48499 * 109.47163 * 150.00230 * 21 19 17 25 25 C 1.47062 * 87.88477 * 27.33984 * 16 15 14 26 26 H 1.09003 * 109.47220 * 305.58641 * 1 2 3 27 27 H 1.09000 * 109.47218 * 65.57985 * 1 2 3 28 28 H 1.08994 * 109.47314 * 185.58361 * 1 2 3 29 29 H 1.09000 * 109.46742 * 239.99681 * 2 1 3 30 30 H 1.09002 * 109.47175 * 119.99655 * 2 1 3 31 31 H 1.08999 * 110.90598 * 215.99694 * 8 6 4 32 32 H 1.09007 * 110.90938 * 339.59950 * 8 6 4 33 33 H 1.08996 * 110.62290 * 278.52228 * 9 8 6 34 34 H 1.09006 * 110.74978 * 155.58704 * 9 8 6 35 35 H 1.08992 * 109.47276 * 302.16716 * 13 11 10 36 36 H 1.08997 * 109.47437 * 62.17618 * 13 11 10 37 37 H 1.09007 * 109.47301 * 182.16957 * 13 11 10 38 38 H 1.09004 * 113.27876 * 193.06251 * 14 3 2 39 39 H 1.09002 * 113.47191 * 105.56071 * 15 14 3 40 40 H 1.09000 * 113.46601 * 335.12275 * 15 14 3 41 41 H 0.96997 * 119.99707 * 179.97438 * 20 19 17 42 42 H 1.09004 * 113.46868 * 87.44037 * 25 16 15 43 43 H 1.08998 * 113.46743 * 217.87825 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1590 2.0463 -1.1638 5 8 1.9689 1.4739 -2.2161 6 6 2.5525 3.5010 -1.1576 7 1 2.1250 4.0071 -0.2921 8 6 4.0938 3.6454 -1.1670 9 6 4.3879 3.8894 -2.6691 10 8 3.2787 4.7066 -3.1011 11 6 2.1009 4.1874 -2.4613 12 1 1.6121 3.4623 -3.1119 13 6 1.1365 5.3309 -2.1401 14 6 2.3538 2.0395 1.2650 15 6 3.4608 1.3390 2.0649 16 7 2.6861 1.6191 3.2832 17 6 2.9682 1.8038 4.6104 18 1 3.9894 1.7502 4.9579 19 6 1.9418 2.0597 5.5091 20 7 0.6972 2.1245 5.0857 21 14 2.3266 2.3109 7.3198 22 1 2.2805 1.0031 8.0217 23 1 3.6821 2.9008 7.4604 24 1 1.3231 3.2286 7.9164 25 6 1.4744 1.6074 2.4499 26 1 -0.3634 0.5980 0.8358 27 1 -0.3633 0.4249 -0.9357 28 1 -0.3633 -1.0227 0.1000 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.4081 4.4983 -0.5654 32 1 4.5725 2.7294 -0.8207 33 1 4.4053 2.9462 -3.2150 34 1 5.3300 4.4227 -2.7965 35 1 1.6373 6.0607 -1.5041 36 1 0.8213 5.8115 -3.0663 37 1 0.2635 4.9351 -1.6210 38 1 2.4862 3.1171 1.1680 39 1 4.4178 1.8596 2.0296 40 1 3.5505 0.2757 1.8424 41 1 -0.0201 2.3029 5.7138 42 1 1.0403 0.6148 2.3289 43 1 0.7390 2.3567 2.7426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957044624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:31 Heat of formation + Delta-G solvation = -19.987184 kcal Electronic energy + Delta-G solvation = -23660.625731 eV Core-core repulsion = 20322.091813 eV Total energy + Delta-G solvation = -3338.533919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69767 -38.99361 -37.69142 -34.62835 -32.77227 -32.10477 -31.54812 -30.29581 -27.61142 -26.44794 -24.76334 -23.59590 -23.44877 -22.28833 -21.13111 -20.02816 -18.37985 -17.59929 -16.71721 -16.17219 -16.02825 -15.46307 -15.24440 -14.87402 -14.58862 -13.95506 -13.90712 -13.42354 -13.27100 -12.83210 -12.63419 -12.44848 -12.34891 -12.16076 -11.93729 -11.65079 -11.60052 -11.40462 -11.27051 -11.04206 -10.98356 -10.92583 -10.81694 -10.66413 -10.35979 -10.17336 -9.71305 -9.56339 -9.42548 -8.92921 -8.21712 -7.03674 -5.90056 -3.23801 2.72488 3.16388 3.32344 3.37626 3.39172 3.81159 4.33565 4.51832 4.57696 4.71364 4.92976 5.12104 5.13654 5.24620 5.26558 5.36333 5.38566 5.39702 5.52676 5.57766 5.60400 5.64898 5.68969 5.72877 5.85897 5.87481 5.92682 6.03322 6.11992 6.15941 6.18832 6.30647 6.38596 6.51189 6.78448 6.87327 7.02668 7.08174 7.38015 7.71610 7.83327 8.35507 8.90259 9.56782 10.46591 11.27299 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.004731 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.324610 B = 5916.830796 C = 6431.605234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.588 5.588 4 C 0.523 3.477 5 O -0.550 6.550 6 C -0.146 4.146 7 H 0.111 0.889 8 C -0.138 4.138 9 C 0.049 3.951 10 O -0.374 6.374 11 C 0.086 3.914 12 H 0.087 0.913 13 C -0.151 4.151 14 C 0.072 3.928 15 C 0.107 3.893 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.083 0.917 19 C -0.004 4.004 20 N -0.919 5.919 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.289 1.289 25 C 0.148 3.852 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.256 0.744 42 H 0.036 0.964 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 2.086 -12.375 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.320 5.320 4 C 0.311 3.689 5 O -0.429 6.429 6 C -0.167 4.167 7 H 0.129 0.871 8 C -0.176 4.176 9 C -0.027 4.027 10 O -0.293 6.293 11 C 0.028 3.972 12 H 0.104 0.896 13 C -0.209 4.209 14 C -0.033 4.033 15 C -0.020 4.020 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.101 0.899 19 C -0.201 4.201 20 N -0.565 5.565 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.205 1.205 24 H -0.215 1.215 25 C 0.022 3.978 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.722 2.026 -12.678 13.124 hybrid contribution 0.103 -0.257 1.414 1.440 sum 2.825 1.770 -11.264 11.747 Atomic orbital electron populations 1.22178 0.95810 1.02144 1.02493 1.21383 0.94561 0.82375 1.02768 1.48055 1.63652 1.13952 1.06308 1.20277 0.76651 0.88472 0.83510 1.90640 1.51932 1.69357 1.30943 1.22796 0.98277 0.94301 1.01322 0.87131 1.23057 0.92824 1.03698 0.98054 1.23533 0.90608 0.95577 0.92996 1.88836 1.16425 1.54773 1.69308 1.22718 0.87397 0.95504 0.91615 0.89554 1.21949 0.98548 0.98111 1.02257 1.23980 1.00399 0.97437 0.81448 1.22814 0.95014 0.97225 0.86991 1.45318 1.03088 1.82100 1.02415 1.18901 0.93317 1.42310 0.80237 0.89878 1.24811 0.95183 1.01852 0.98290 1.69812 0.98436 1.54511 1.33725 0.86084 0.77383 0.77676 0.84397 1.21489 1.20477 1.21505 1.22572 0.91775 0.99200 0.84276 0.91439 0.92746 0.91952 0.90606 0.89948 0.89277 0.89731 0.91898 0.88893 0.91765 0.91769 0.91108 0.86773 0.93813 0.94671 0.93449 0.94601 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.90 37.16 0.37 -2.02 16 2 C 0.11 1.67 5.20 -4.04 -0.02 1.65 16 3 N -0.59 -9.19 2.72 -165.73 -0.45 -9.64 16 4 C 0.52 8.13 6.69 -10.98 -0.07 8.06 16 5 O -0.55 -9.84 15.18 5.55 0.08 -9.76 16 6 C -0.15 -1.93 2.14 -90.24 -0.19 -2.12 16 7 H 0.11 1.42 5.95 -51.93 -0.31 1.11 16 8 C -0.14 -1.61 6.70 -24.73 -0.17 -1.78 16 9 C 0.05 0.58 7.72 38.21 0.29 0.87 16 10 O -0.37 -5.16 11.19 -35.23 -0.39 -5.55 16 11 C 0.09 1.14 3.62 -26.16 -0.09 1.04 16 12 H 0.09 1.29 6.70 -51.93 -0.35 0.94 16 13 C -0.15 -1.70 9.36 37.16 0.35 -1.35 16 14 C 0.07 1.23 4.45 -67.68 -0.30 0.93 16 15 C 0.11 2.03 8.23 -8.50 -0.07 1.96 16 16 N -0.60 -14.45 3.78 -184.61 -0.70 -15.15 16 17 C -0.22 -5.87 10.75 -15.06 -0.16 -6.03 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.00 11.50 55.49 0.64 -25.36 16 21 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.15 3.19 6.20 -8.37 -0.05 3.14 16 26 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.12 7.49 -51.93 -0.39 0.73 16 30 H 0.08 1.26 5.99 -51.93 -0.31 0.95 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.99 7.86 -51.93 -0.41 0.59 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.87 5.78 -51.93 -0.30 1.56 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.66 7.03 -51.93 -0.37 0.30 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 0.78 5.47 -51.93 -0.28 0.50 16 43 H 0.08 1.84 7.11 -51.93 -0.37 1.47 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -30.35 337.19 -7.76 -38.11 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.78 Total: 1.94 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.22 Total: 4.13 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.51 Total: -50.15 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.31 Total: -15.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.35 -7.76 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957044624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.124 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds