Wall clock time and date at job start Tue Mar 31 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42908 * 109.47208 * 2 1 4 4 C 1.42897 * 113.99804 * 179.97438 * 3 2 1 5 5 C 1.53786 * 113.61258 * 150.00086 * 4 3 2 6 6 C 1.53779 * 87.08418 * 89.11662 * 5 4 3 7 7 C 1.50698 * 113.61695 * 139.98098 * 6 5 4 8 8 O 1.21284 * 119.99746 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99756 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.65440 * 359.97111 * 9 7 6 11 11 C 1.54904 * 104.83588 * 155.91779 * 10 9 7 12 12 C 1.55163 * 101.58089 * 37.01349 * 11 10 9 13 13 H 1.09002 * 110.71868 * 83.03475 * 12 11 10 14 14 N 1.46490 * 110.71993 * 206.13410 * 12 11 10 15 15 C 1.36935 * 120.00121 * 273.54103 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47030 * 125.64654 * 180.02562 * 9 7 6 24 24 C 1.53781 * 113.61488 * 247.49387 * 4 3 2 25 25 H 1.09006 * 109.47519 * 300.00281 * 1 2 3 26 26 H 1.08999 * 109.47052 * 59.99827 * 1 2 3 27 27 H 1.08992 * 109.47574 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47679 * 239.99777 * 2 1 3 29 29 H 1.09003 * 109.46966 * 119.99664 * 2 1 3 30 30 H 1.09002 * 112.91351 * 18.74894 * 4 3 2 31 31 H 1.08998 * 113.61158 * 334.56161 * 5 4 3 32 32 H 1.09007 * 113.68979 * 203.67920 * 5 4 3 33 33 H 1.08998 * 113.61337 * 270.80286 * 6 5 4 34 34 H 1.09000 * 110.36241 * 37.08131 * 10 9 7 35 35 H 1.08998 * 110.46123 * 274.81125 * 10 9 7 36 36 H 1.08994 * 111.00996 * 278.93912 * 11 10 9 37 37 H 1.09000 * 111.03777 * 155.09902 * 11 10 9 38 38 H 0.97000 * 120.00577 * 93.54703 * 14 12 11 39 39 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 40 40 H 1.08999 * 109.88565 * 61.58837 * 23 9 7 41 41 H 1.08999 * 109.87582 * 300.42591 * 23 9 7 42 42 H 1.09000 * 113.61689 * 156.33919 * 24 4 3 43 43 H 1.09003 * 113.61367 * 25.43488 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.9489 2.7251 -0.7039 6 6 3.8391 3.4328 0.6569 7 6 4.9834 4.3705 0.9438 8 8 5.8742 4.5063 0.1320 9 7 5.0169 5.0581 2.1025 10 6 4.0048 4.9891 3.1721 11 6 4.7561 5.4174 4.4573 12 6 5.6985 6.5235 3.9132 13 1 5.1758 7.4778 3.8480 14 7 6.8933 6.6452 4.7520 15 6 6.8734 7.4506 5.8593 16 1 5.9767 7.9958 6.1144 17 6 8.0057 7.5664 6.6539 18 7 9.0987 6.9023 6.3427 19 14 7.9782 8.6646 8.1647 20 1 9.3018 8.6156 8.8364 21 1 7.6824 10.0613 7.7560 22 1 6.9290 8.1903 9.1024 23 6 6.0684 6.0021 2.5086 24 6 4.0018 2.0466 1.3025 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.9290 0.5458 -0.3218 31 1 3.2646 3.1170 -1.4564 32 1 4.9723 2.6355 -1.0682 33 1 2.8646 3.8873 0.8353 34 1 3.6292 3.9710 3.2738 35 1 3.1844 5.6764 2.9654 36 1 5.3272 4.5865 4.8713 37 1 4.0659 5.8217 5.1977 38 1 7.6986 6.1553 4.5231 39 1 9.1128 6.3318 5.5583 40 1 6.1127 6.8330 1.8045 41 1 7.0309 5.4919 2.5441 42 1 5.0398 1.7703 1.4875 43 1 3.3602 1.8908 2.1698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968564407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:19 Heat of formation + Delta-G solvation = -46.284043 kcal Electronic energy + Delta-G solvation = -22282.885679 eV Core-core repulsion = 18943.211443 eV Total energy + Delta-G solvation = -3339.674236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57449 -38.98009 -37.39916 -35.96585 -34.40689 -31.61446 -31.20044 -29.46614 -28.09734 -25.97690 -25.81100 -23.41611 -23.18468 -22.82758 -20.59974 -20.01566 -18.94764 -17.55626 -17.46217 -16.53289 -16.13583 -15.78988 -15.75507 -14.92015 -14.78752 -14.30038 -13.76072 -13.62570 -13.40609 -13.19023 -13.05695 -12.70162 -12.57600 -12.53247 -12.10393 -11.82987 -11.74757 -11.72383 -11.53976 -11.06565 -10.87065 -10.74956 -10.66288 -10.62417 -10.32265 -10.01305 -9.82258 -9.53452 -9.23587 -8.98217 -8.43491 -7.12781 -6.16062 -3.17866 2.72535 3.13043 3.24668 3.49143 3.52441 3.70129 4.25542 4.35441 4.52278 4.56891 4.62565 4.71976 4.84172 4.96721 5.00509 5.01630 5.03823 5.27822 5.29958 5.36050 5.50579 5.52051 5.54176 5.54841 5.60187 5.69932 5.73553 5.78387 5.85732 5.89718 5.98563 6.01310 6.17516 6.31051 6.52272 6.52703 6.82241 6.94465 7.71022 7.74851 8.31133 8.69085 9.13730 10.00310 10.13992 11.31863 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033434 B = 0.002986 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.276196 B = 9374.137520 C = 9803.053301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.367 6.367 4 C 0.064 3.936 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.533 3.467 8 O -0.548 6.548 9 N -0.611 5.611 10 C 0.099 3.901 11 C -0.153 4.153 12 C 0.177 3.823 13 H 0.065 0.935 14 N -0.728 5.728 15 C -0.335 4.335 16 H 0.067 0.933 17 C -0.043 4.043 18 N -0.941 5.941 19 Si 1.081 2.919 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.295 1.295 23 C 0.100 3.900 24 C -0.140 4.140 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.369 0.631 39 H 0.256 0.744 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 -13.157 -11.915 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.286 6.286 4 C 0.006 3.994 5 C -0.154 4.154 6 C -0.145 4.145 7 C 0.322 3.678 8 O -0.426 6.426 9 N -0.344 5.344 10 C -0.024 4.024 11 C -0.194 4.194 12 C 0.065 3.935 13 H 0.083 0.917 14 N -0.370 5.370 15 C -0.466 4.466 16 H 0.085 0.915 17 C -0.241 4.241 18 N -0.585 5.585 19 Si 0.912 3.088 20 H -0.210 1.210 21 H -0.222 1.222 22 H -0.222 1.222 23 C -0.023 4.023 24 C -0.178 4.178 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.721 -12.250 -11.048 22.787 hybrid contribution -0.662 -0.884 -1.210 1.638 sum -16.384 -13.134 -12.258 24.314 Atomic orbital electron populations 1.21748 0.93683 1.02269 1.03223 1.22541 0.95589 0.83762 1.00154 1.87892 1.19704 1.26423 1.94562 1.23008 0.81533 0.98271 0.96567 1.23116 1.02726 0.93849 0.95691 1.22635 0.98224 0.94518 0.99106 1.20178 0.87344 0.80236 0.80087 1.90675 1.39532 1.65982 1.46387 1.48491 1.25006 1.43238 1.17665 1.22391 0.91331 1.01133 0.87539 1.23528 0.99504 1.01176 0.95229 1.21123 0.89202 0.95693 0.87465 0.91727 1.42372 1.10002 1.55510 1.29089 1.20009 1.00269 1.22950 1.03386 0.91543 1.25826 0.92213 1.02490 1.03525 1.70885 1.28223 1.30867 1.28558 0.83230 0.75636 0.74934 0.75044 1.21006 1.22176 1.22190 1.22271 0.91044 0.91911 0.97122 1.23379 1.02243 0.93989 0.98227 0.91757 0.91837 0.91102 0.93298 0.93248 0.90383 0.90155 0.87546 0.86795 0.91167 0.91633 0.90834 0.90496 0.79724 0.93299 0.91666 0.91466 0.88796 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.15 0.38 -0.54 16 2 C 0.06 0.41 6.50 37.15 0.24 0.65 16 3 O -0.37 -3.62 10.27 -35.23 -0.36 -3.98 16 4 C 0.06 0.61 4.37 -25.92 -0.11 0.49 16 5 C -0.12 -1.26 7.24 -25.92 -0.19 -1.44 16 6 C -0.12 -1.47 3.07 -90.96 -0.28 -1.75 16 7 C 0.53 8.44 7.37 -10.99 -0.08 8.36 16 8 O -0.55 -10.57 16.23 5.55 0.09 -10.48 16 9 N -0.61 -9.69 3.33 -170.52 -0.57 -10.26 16 10 C 0.10 1.34 6.66 -2.53 -0.02 1.32 16 11 C -0.15 -2.54 6.77 -24.58 -0.17 -2.71 16 12 C 0.18 3.46 3.59 -66.10 -0.24 3.22 16 13 H 0.06 1.28 8.12 -51.93 -0.42 0.85 16 14 N -0.73 -17.91 5.25 -51.66 -0.27 -18.18 16 15 C -0.34 -9.21 9.98 -15.06 -0.15 -9.36 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 18 N -0.94 -28.91 13.70 55.49 0.76 -28.15 16 19 Si 1.08 25.52 29.92 -169.99 -5.09 20.43 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.10 1.82 6.62 -3.06 -0.02 1.80 16 24 C -0.14 -1.44 7.04 -25.92 -0.18 -1.62 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.11 1.24 7.43 -51.93 -0.39 0.86 16 33 H 0.11 1.26 8.09 -51.93 -0.42 0.84 16 34 H 0.07 0.81 7.22 -51.93 -0.37 0.43 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.37 9.49 6.34 -40.82 -0.26 9.23 16 39 H 0.26 7.76 6.77 -40.82 -0.28 7.49 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 42 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 43 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 349.92 15.07 5.27 5.27 Total: -1.00 -32.79 349.92 -8.29 -41.08 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.22 Total: 7.16 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.91 Total: -2.89 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.08 Total: -56.60 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.27 Total: -14.46 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.79 -8.29 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968564407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.204 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds